Wall clock time and date at job start Mon Mar 30 2020 06:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99625 * 2 1 4 4 H 1.48504 * 109.46853 * 270.00176 * 3 2 1 5 5 H 1.48498 * 109.47472 * 29.99967 * 3 2 1 6 6 H 1.48501 * 109.47327 * 150.00365 * 3 2 1 7 7 C 1.37872 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99620 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00488 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.64116 * 56.85963 * 9 7 2 11 11 C 1.55156 * 110.72292 * 293.52295 * 9 7 2 12 12 C 1.55124 * 101.48665 * 205.97076 * 11 9 7 13 13 N 1.47425 * 104.72614 * 37.29203 * 12 11 9 14 14 C 1.34775 * 125.65011 * 155.81839 * 13 12 11 15 15 O 1.21283 * 120.00134 * 179.69133 * 14 13 12 16 16 C 1.50699 * 119.99809 * 359.69432 * 14 13 12 17 17 C 1.53005 * 109.46899 * 180.02562 * 16 14 13 18 18 H 1.09002 * 115.55067 * 330.58136 * 17 16 14 19 19 C 1.53005 * 117.49765 * 116.25150 * 17 16 14 20 20 C 1.52999 * 117.51737 * 184.88171 * 17 16 14 21 21 H 1.09003 * 117.50034 * 0.02562 * 20 17 16 22 22 C 1.52994 * 117.50151 * 145.02748 * 20 17 16 23 23 C 1.53001 * 117.50053 * 248.74652 * 22 20 17 24 24 C 1.52999 * 117.50437 * 180.08708 * 22 20 17 25 25 C 1.47024 * 108.69971 * 335.55277 * 13 12 11 26 26 H 0.97004 * 120.00413 * 359.97438 * 1 2 3 27 27 H 1.09001 * 110.99972 * 324.20602 * 11 9 7 28 28 H 1.08990 * 111.00613 * 88.01963 * 11 9 7 29 29 H 1.09002 * 110.49251 * 278.44824 * 12 11 9 30 30 H 1.09002 * 110.34529 * 156.05613 * 12 11 9 31 31 H 1.08995 * 109.47597 * 60.00196 * 16 14 13 32 32 H 1.09005 * 109.47153 * 299.99574 * 16 14 13 33 33 H 1.09004 * 117.49360 * 215.00124 * 19 17 16 34 34 H 1.08995 * 117.49694 * 359.97438 * 19 17 16 35 35 H 1.09005 * 115.54866 * 34.41517 * 22 20 17 36 36 H 1.08996 * 117.49884 * 359.97438 * 23 22 20 37 37 H 1.09004 * 117.49586 * 145.01583 * 23 22 20 38 38 H 1.09003 * 117.49870 * 214.98583 * 24 22 20 39 39 H 1.09004 * 117.49603 * 359.97438 * 24 22 20 40 40 H 1.09005 * 109.87701 * 120.70301 * 25 13 12 41 41 H 1.08997 * 109.88576 * 241.71421 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 1 0.5757 -2.5537 -0.8521 11 6 0.4755 -2.6841 1.3327 12 6 0.3778 -4.2298 1.4210 13 7 1.6657 -4.7174 0.8949 14 6 2.2312 -5.9070 1.1805 15 8 3.2961 -6.2072 0.6837 16 6 1.5401 -6.8642 2.1171 17 6 2.3872 -8.1291 2.2700 18 1 3.0011 -8.3908 1.4081 19 6 2.9504 -8.4387 3.6586 20 6 1.8013 -9.2770 3.0946 21 1 0.8118 -9.1313 3.5281 22 6 2.1217 -10.7042 2.6464 23 6 0.9733 -11.5415 2.0798 24 6 1.5341 -11.8521 3.4698 25 6 2.2282 -3.6937 0.0020 26 1 -0.4851 0.8400 0.0004 27 1 1.0381 -2.2763 2.1725 28 1 -0.5152 -2.2339 1.2734 29 1 -0.4456 -4.5957 0.8076 30 1 0.2483 -4.5428 2.4571 31 1 0.5632 -7.1276 1.7119 32 1 1.4140 -6.3919 3.0914 33 1 3.9347 -8.9041 3.7101 34 1 2.7176 -7.7410 4.4630 35 1 3.1118 -10.8502 2.2143 36 1 -0.0107 -11.0756 2.0268 37 1 1.2079 -12.2385 1.2752 38 1 2.1375 -12.7533 3.5792 39 1 0.9195 -11.5904 4.3311 40 1 3.2031 -3.3750 0.3711 41 1 2.3269 -4.0951 -1.0065 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712929045.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:12 Heat of formation + Delta-G solvation = -15.379086 kcal Electronic energy + Delta-G solvation = -19346.341130 eV Core-core repulsion = 16419.426615 eV Total energy + Delta-G solvation = -2926.914515 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.03315 -39.44947 -38.29903 -36.36816 -34.97014 -32.42257 -30.47760 -29.78352 -26.74301 -24.54829 -24.00792 -23.17266 -22.10762 -21.37659 -20.98511 -19.98455 -18.69686 -17.91296 -16.92151 -16.81891 -16.54283 -16.30494 -15.60332 -15.32250 -14.65449 -14.39878 -14.32030 -14.11605 -13.52750 -13.35041 -13.08681 -12.93662 -12.89595 -12.69427 -12.54791 -12.35181 -12.29799 -12.07849 -12.05023 -11.59687 -11.48860 -11.37086 -10.98249 -10.86608 -10.66734 -10.51873 -10.22125 -9.56302 -8.17317 -6.26250 1.41555 1.43346 1.52827 1.67714 2.08979 2.43204 2.62108 3.14692 3.28716 3.47601 3.66823 3.90244 3.99694 4.07198 4.14644 4.28895 4.34694 4.37662 4.41157 4.44519 4.46844 4.54655 4.71556 4.74971 4.80906 4.81133 4.84100 4.96366 5.07360 5.11938 5.24666 5.28062 5.31099 5.32509 5.37605 5.45176 5.57510 5.76853 5.86583 6.27631 6.69162 6.79723 7.20945 7.41162 8.92052 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.051307 B = 0.003249 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.605018 B = 8615.201910 C = 8775.510689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.022 3.978 3 Si 0.953 3.047 4 H -0.277 1.277 5 H -0.279 1.279 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.048 0.952 9 C 0.038 3.962 10 H 0.019 0.981 11 C -0.103 4.103 12 C 0.103 3.897 13 N -0.616 5.616 14 C 0.516 3.484 15 O -0.596 6.596 16 C -0.092 4.092 17 C -0.148 4.148 18 H 0.088 0.912 19 C -0.170 4.170 20 C -0.100 4.100 21 H 0.121 0.879 22 C -0.141 4.141 23 C -0.179 4.179 24 C -0.167 4.167 25 C 0.120 3.880 26 H 0.264 0.736 27 H 0.047 0.953 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.039 0.961 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.277 -18.594 9.008 20.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.178 4.178 3 Si 0.779 3.221 4 H -0.203 1.203 5 H -0.204 1.204 6 H -0.198 1.198 7 C -0.574 4.574 8 H 0.066 0.934 9 C 0.019 3.981 10 H 0.037 0.963 11 C -0.142 4.142 12 C -0.019 4.019 13 N -0.349 5.349 14 C 0.307 3.693 15 O -0.478 6.478 16 C -0.131 4.131 17 C -0.167 4.167 18 H 0.106 0.894 19 C -0.207 4.207 20 C -0.118 4.118 21 H 0.139 0.861 22 C -0.159 4.159 23 C -0.216 4.216 24 C -0.204 4.204 25 C -0.003 4.003 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.119 0.881 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.109 0.891 34 H 0.125 0.875 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.058 0.942 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.853 -18.702 8.771 20.740 hybrid contribution 0.703 1.312 -0.547 1.586 sum -1.150 -17.390 8.225 19.271 Atomic orbital electron populations 1.70025 1.06877 1.27573 1.50503 1.25625 0.95720 1.02020 0.94431 0.85634 0.78704 0.79564 0.78226 1.20259 1.20431 1.19759 1.21317 0.92746 0.91562 1.51811 0.93356 1.19628 0.92902 0.90896 0.94671 0.96300 1.22582 1.00756 0.92598 0.98251 1.22616 0.84334 0.94833 1.00103 1.48836 1.23159 1.16347 1.46548 1.21118 0.84901 0.81145 0.82121 1.90623 1.24672 1.76691 1.55818 1.21200 0.99678 0.92617 0.99579 1.21997 1.03106 0.95418 0.96162 0.89354 1.23198 0.98401 1.03134 0.95958 1.21895 0.98401 0.89328 1.02139 0.86112 1.21751 0.98138 0.90585 1.05458 1.23032 0.98220 1.02997 0.97384 1.23023 1.03654 0.98800 0.94952 1.21962 0.97618 0.88654 0.92029 0.92692 0.93449 0.91225 0.90296 0.88087 0.86510 0.86726 0.89071 0.87520 0.88817 0.88208 0.88519 0.88115 0.87886 0.94210 0.94144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.27 12.50 21.45 0.27 -50.00 16 2 C 0.02 1.19 5.36 84.65 0.45 1.64 16 3 Si 0.95 42.81 29.54 68.60 2.03 44.83 16 4 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 7 C -0.54 -29.17 8.47 25.60 0.22 -28.95 16 8 H 0.05 2.66 7.53 -2.91 -0.02 2.64 16 9 C 0.04 1.86 2.78 -10.35 -0.03 1.83 16 10 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 11 C -0.10 -4.35 5.96 32.06 0.19 -4.15 16 12 C 0.10 3.27 6.70 86.93 0.58 3.85 16 13 N -0.62 -23.09 3.32 -811.35 -2.70 -25.79 16 14 C 0.52 18.35 7.85 87.66 0.69 19.04 16 15 O -0.60 -26.17 15.89 -3.04 -0.05 -26.22 16 16 C -0.09 -2.17 4.98 29.85 0.15 -2.02 16 17 C -0.15 -3.51 5.13 -10.79 -0.06 -3.57 16 18 H 0.09 2.64 7.31 -2.39 -0.02 2.63 16 19 C -0.17 -3.35 9.90 30.60 0.30 -3.04 16 20 C -0.10 -1.76 5.57 -10.79 -0.06 -1.82 16 21 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 22 C -0.14 -2.40 5.84 -10.80 -0.06 -2.47 16 23 C -0.18 -2.62 10.25 30.62 0.31 -2.31 16 24 C -0.17 -2.21 10.25 30.62 0.31 -1.90 16 25 C 0.12 5.42 6.45 86.73 0.56 5.98 16 26 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 27 H 0.05 2.08 8.04 -2.39 -0.02 2.06 16 28 H 0.07 3.08 7.77 -2.39 -0.02 3.06 16 29 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.10 2.44 7.48 -2.39 -0.02 2.42 16 31 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.11 2.21 7.59 -2.38 -0.02 2.19 16 33 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.11 1.83 8.03 -2.39 -0.02 1.81 16 35 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.04 1.92 7.63 -2.38 -0.02 1.90 16 41 H 0.04 1.83 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -64.30 337.33 4.10 -60.20 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.99 Total: 14.85 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: 3.56 Total: -17.89 kcal Atomic # 7 Polarization: -73.36 SS G_CDS: -2.43 Total: -75.79 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.05 Total: -26.22 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -64.30 4.10 -60.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712929045.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.824 kcal (2) G-P(sol) polarization free energy of solvation -64.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds