Wall clock time and date at job start Mon Mar 30 2020 06:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99926 * 2 1 4 4 H 1.48498 * 109.47110 * 270.00352 * 3 2 1 5 5 H 1.48504 * 109.47044 * 30.00076 * 3 2 1 6 6 H 1.48500 * 109.47158 * 150.00096 * 3 2 1 7 7 C 1.37875 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00333 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99529 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.91551 * 56.10193 * 9 7 2 11 11 C 1.55151 * 111.00641 * 292.19405 * 9 7 2 12 12 C 1.54326 * 102.94313 * 206.42337 * 11 9 7 13 13 N 1.47021 * 107.27002 * 22.19392 * 12 11 9 14 14 C 1.34779 * 125.64696 * 181.01910 * 13 12 11 15 15 O 1.21277 * 119.99668 * 180.02562 * 14 13 12 16 16 C 1.50697 * 120.00088 * 0.04337 * 14 13 12 17 17 C 1.52997 * 109.47275 * 179.97438 * 16 14 13 18 18 H 1.09002 * 115.55148 * 330.67309 * 17 16 14 19 19 C 1.53003 * 117.49867 * 116.37798 * 17 16 14 20 20 C 1.52995 * 117.50300 * 185.00143 * 17 16 14 21 21 H 1.08995 * 117.50093 * 145.01817 * 20 17 16 22 22 C 1.53008 * 117.49851 * 0.02562 * 20 17 16 23 23 C 1.52996 * 117.50223 * 128.61927 * 22 20 17 24 24 C 1.53000 * 117.49586 * 59.99583 * 22 20 17 25 25 C 1.47421 * 108.70450 * 1.06211 * 13 12 11 26 26 H 0.96999 * 120.00046 * 359.97438 * 1 2 3 27 27 H 1.09000 * 110.72429 * 324.79291 * 11 9 7 28 28 H 1.09003 * 110.71831 * 88.06413 * 11 9 7 29 29 H 1.08996 * 109.88384 * 262.77575 * 12 11 9 30 30 H 1.09002 * 110.00880 * 141.68666 * 12 11 9 31 31 H 1.09002 * 109.47227 * 300.00139 * 16 14 13 32 32 H 1.09001 * 109.47331 * 60.00119 * 16 14 13 33 33 H 1.09002 * 117.49694 * 214.97793 * 19 17 16 34 34 H 1.08996 * 117.50041 * 0.02562 * 19 17 16 35 35 H 1.09000 * 115.54837 * 274.33306 * 22 20 17 36 36 H 1.09003 * 117.49754 * 0.02562 * 23 22 20 37 37 H 1.08993 * 117.49885 * 145.02216 * 23 22 20 38 38 H 1.08998 * 117.49685 * 214.97826 * 24 22 20 39 39 H 1.08999 * 117.50398 * 359.97438 * 24 22 20 40 40 H 1.09002 * 110.36865 * 217.03325 * 25 13 12 41 41 H 1.09001 * 110.37117 * 94.70643 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.5644 -2.5519 -0.8454 11 6 0.4997 -2.7074 1.3408 12 6 0.3981 -4.2438 1.4450 13 7 1.4591 -4.8098 0.5991 14 6 1.6925 -6.1230 0.4054 15 8 2.6001 -6.4774 -0.3168 16 6 0.8256 -7.1508 1.0857 17 6 1.2994 -8.5535 0.7000 18 1 1.7627 -8.6396 -0.2828 19 6 1.8398 -9.4487 1.8170 20 6 0.4718 -9.7404 1.1971 21 1 0.3908 -10.6073 0.5415 22 6 -0.7668 -9.4338 2.0415 23 6 -2.0879 -10.0789 1.6180 24 6 -1.8642 -8.5808 1.4019 25 6 2.2259 -3.7031 -0.0012 26 1 -0.4850 0.8400 0.0004 27 1 1.0755 -2.3016 2.1726 28 1 -0.4922 -2.2572 1.3011 29 1 -0.5769 -4.5759 1.0886 30 1 0.5412 -4.5578 2.4790 31 1 0.8960 -7.0275 2.1665 32 1 -0.2097 -7.0183 0.7716 33 1 2.6589 -10.1238 1.5691 34 1 1.8574 -9.0385 2.8267 35 1 -0.5881 -9.3061 3.1091 36 1 -2.0747 -10.7221 0.7381 37 1 -2.7786 -10.3759 2.4071 38 1 -2.4078 -7.8924 2.0489 39 1 -1.7037 -8.2377 0.3798 40 1 2.5186 -3.9536 -1.0209 41 1 3.1054 -3.4794 0.6027 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712929046.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:16 Heat of formation + Delta-G solvation = 1.303960 kcal Electronic energy + Delta-G solvation = -19758.315815 eV Core-core repulsion = 16832.124731 eV Total energy + Delta-G solvation = -2926.191084 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.74090 -38.57196 -36.70141 -35.24608 -33.03653 -30.77193 -29.14712 -28.21269 -24.88262 -23.82661 -22.66661 -22.30606 -21.37220 -19.90249 -19.36597 -18.46458 -16.89993 -16.40521 -15.71310 -15.63079 -15.24202 -14.60893 -14.36731 -14.00829 -13.81171 -13.11724 -12.67435 -12.56080 -12.36411 -11.92469 -11.63452 -11.53766 -11.46304 -11.40254 -11.23465 -11.00526 -10.83531 -10.80504 -10.73574 -10.48005 -9.83622 -9.81211 -9.57684 -9.48170 -9.22825 -9.00260 -8.48555 -7.96977 -6.12033 -4.15355 3.11220 3.26943 3.33861 3.36725 3.42662 3.63374 3.88267 4.37795 4.40516 4.67384 4.77057 4.87526 4.92483 5.06505 5.21202 5.24459 5.38060 5.48783 5.54361 5.62553 5.66459 5.69985 5.76140 5.77715 5.87577 5.97197 6.02573 6.04338 6.11067 6.26852 6.33930 6.38495 6.63453 6.83141 6.98673 7.10708 7.43069 7.69497 7.87798 8.17526 8.28378 8.68310 8.87061 9.49771 10.98180 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.036568 B = 0.003881 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.503867 B = 7212.363011 C = 7748.336206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.060 0.940 9 C 0.046 3.954 10 H 0.042 0.958 11 C -0.113 4.113 12 C 0.096 3.904 13 N -0.613 5.613 14 C 0.521 3.479 15 O -0.557 6.557 16 C -0.105 4.105 17 C -0.126 4.126 18 H 0.117 0.883 19 C -0.170 4.170 20 C -0.126 4.126 21 H 0.105 0.895 22 C -0.123 4.123 23 C -0.179 4.179 24 C -0.178 4.178 25 C 0.107 3.893 26 H 0.262 0.738 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.060 0.940 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.943 -16.259 5.539 17.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.078 0.922 9 C 0.026 3.974 10 H 0.060 0.940 11 C -0.152 4.152 12 C -0.027 4.027 13 N -0.346 5.346 14 C 0.310 3.690 15 O -0.437 6.437 16 C -0.144 4.144 17 C -0.144 4.144 18 H 0.135 0.865 19 C -0.207 4.207 20 C -0.144 4.144 21 H 0.123 0.877 22 C -0.141 4.141 23 C -0.215 4.215 24 C -0.215 4.215 25 C -0.014 4.014 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.122 0.878 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.079 0.921 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.612 -16.392 5.159 17.560 hybrid contribution 0.320 0.971 0.141 1.032 sum -3.292 -15.421 5.300 16.635 Atomic orbital electron populations 1.69944 1.05939 1.26788 1.49980 1.24955 0.94868 0.99157 0.94700 0.86562 0.79874 0.83188 0.78211 1.20598 1.21207 1.19809 1.20958 0.92987 0.89838 1.51558 0.92221 1.19839 0.92801 0.91088 0.93624 0.93992 1.22650 1.02570 0.89027 1.00928 1.22233 0.89765 0.97677 0.92995 1.48760 1.33224 1.05136 1.47450 1.20205 0.84935 0.82106 0.81796 1.90633 1.33112 1.80103 1.39812 1.21212 1.00191 0.91891 1.01146 1.22141 1.02665 0.89724 0.99889 0.86482 1.23101 0.96152 1.03401 0.98032 1.21867 0.90652 0.99708 1.02162 0.87737 1.21704 0.88636 1.05053 0.98700 1.22967 0.99235 0.96098 1.03250 1.23035 1.02325 0.93627 1.02502 1.22582 0.95644 0.86154 0.97039 0.92869 0.92125 0.90246 0.92603 0.92993 0.89354 0.88398 0.88803 0.88857 0.87784 0.88904 0.88987 0.88636 0.88420 0.92103 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.41 12.62 55.43 0.70 -23.71 16 2 C 0.07 1.75 5.37 -17.82 -0.10 1.65 16 3 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.52 -13.61 8.49 -34.44 -0.29 -13.91 16 8 H 0.06 1.57 7.77 -52.49 -0.41 1.16 16 9 C 0.05 1.10 2.85 -89.62 -0.26 0.84 16 10 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 11 C -0.11 -2.40 5.90 -24.90 -0.15 -2.55 16 12 C 0.10 1.67 6.49 -3.06 -0.02 1.65 16 13 N -0.61 -11.81 3.33 -170.52 -0.57 -12.37 16 14 C 0.52 9.57 7.85 -10.99 -0.09 9.48 16 15 O -0.56 -12.04 15.82 5.56 0.09 -11.95 16 16 C -0.10 -1.42 4.13 -27.89 -0.12 -1.53 16 17 C -0.13 -1.59 5.40 -90.62 -0.49 -2.08 16 18 H 0.12 1.70 7.31 -51.93 -0.38 1.33 16 19 C -0.17 -1.82 9.90 -26.73 -0.26 -2.08 16 20 C -0.13 -1.27 5.87 -90.62 -0.53 -1.81 16 21 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 22 C -0.12 -1.13 5.25 -90.62 -0.48 -1.60 16 23 C -0.18 -1.48 10.25 -26.73 -0.27 -1.75 16 24 C -0.18 -1.63 8.44 -26.73 -0.23 -1.85 16 25 C 0.11 2.35 6.35 -2.53 -0.02 2.33 16 26 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 27 H 0.06 1.31 8.03 -51.93 -0.42 0.90 16 28 H 0.08 1.77 7.85 -51.93 -0.41 1.37 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 1.08 7.88 -51.93 -0.41 0.68 16 32 H 0.10 1.22 5.63 -51.93 -0.29 0.92 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.09 0.95 8.03 -51.93 -0.42 0.53 16 35 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.10 0.97 7.30 -51.93 -0.38 0.59 16 40 H 0.06 1.37 8.04 -51.93 -0.42 0.95 16 41 H 0.06 1.28 8.01 -51.93 -0.42 0.86 16 LS Contribution 332.59 15.07 5.01 5.01 Total: -1.00 -28.89 332.59 -9.96 -38.85 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -6.88 Total: 1.75 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -3.29 Total: -13.21 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.13 Total: -36.08 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.09 Total: -11.95 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.89 -9.96 -38.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712929046.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.153 kcal (2) G-P(sol) polarization free energy of solvation -28.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds