Wall clock time and date at job start Mon Mar 30 2020 06:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99926 * 2 1 4 4 H 1.48498 * 109.47110 * 270.00352 * 3 2 1 5 5 H 1.48504 * 109.47044 * 30.00076 * 3 2 1 6 6 H 1.48500 * 109.47158 * 150.00096 * 3 2 1 7 7 C 1.37875 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00333 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99529 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.91551 * 56.10193 * 9 7 2 11 11 C 1.55151 * 111.00641 * 292.19405 * 9 7 2 12 12 C 1.54326 * 102.94313 * 206.42337 * 11 9 7 13 13 N 1.47021 * 107.27002 * 22.19392 * 12 11 9 14 14 C 1.34779 * 125.64696 * 181.01910 * 13 12 11 15 15 O 1.21277 * 119.99668 * 180.02562 * 14 13 12 16 16 C 1.50697 * 120.00088 * 0.04337 * 14 13 12 17 17 C 1.52997 * 109.47275 * 179.97438 * 16 14 13 18 18 H 1.09002 * 115.55148 * 330.67309 * 17 16 14 19 19 C 1.53003 * 117.49867 * 116.37798 * 17 16 14 20 20 C 1.52995 * 117.50300 * 185.00143 * 17 16 14 21 21 H 1.08995 * 117.50093 * 145.01817 * 20 17 16 22 22 C 1.53008 * 117.49851 * 0.02562 * 20 17 16 23 23 C 1.52996 * 117.50223 * 128.61927 * 22 20 17 24 24 C 1.53000 * 117.49586 * 59.99583 * 22 20 17 25 25 C 1.47421 * 108.70450 * 1.06211 * 13 12 11 26 26 H 0.96999 * 120.00046 * 359.97438 * 1 2 3 27 27 H 1.09000 * 110.72429 * 324.79291 * 11 9 7 28 28 H 1.09003 * 110.71831 * 88.06413 * 11 9 7 29 29 H 1.08996 * 109.88384 * 262.77575 * 12 11 9 30 30 H 1.09002 * 110.00880 * 141.68666 * 12 11 9 31 31 H 1.09002 * 109.47227 * 300.00139 * 16 14 13 32 32 H 1.09001 * 109.47331 * 60.00119 * 16 14 13 33 33 H 1.09002 * 117.49694 * 214.97793 * 19 17 16 34 34 H 1.08996 * 117.50041 * 0.02562 * 19 17 16 35 35 H 1.09000 * 115.54837 * 274.33306 * 22 20 17 36 36 H 1.09003 * 117.49754 * 0.02562 * 23 22 20 37 37 H 1.08993 * 117.49885 * 145.02216 * 23 22 20 38 38 H 1.08998 * 117.49685 * 214.97826 * 24 22 20 39 39 H 1.08999 * 117.50398 * 359.97438 * 24 22 20 40 40 H 1.09002 * 110.36865 * 217.03325 * 25 13 12 41 41 H 1.09001 * 110.37117 * 94.70643 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.5644 -2.5519 -0.8454 11 6 0.4997 -2.7074 1.3408 12 6 0.3981 -4.2438 1.4450 13 7 1.4591 -4.8098 0.5991 14 6 1.6925 -6.1230 0.4054 15 8 2.6001 -6.4774 -0.3168 16 6 0.8256 -7.1508 1.0857 17 6 1.2994 -8.5535 0.7000 18 1 1.7627 -8.6396 -0.2828 19 6 1.8398 -9.4487 1.8170 20 6 0.4718 -9.7404 1.1971 21 1 0.3908 -10.6073 0.5415 22 6 -0.7668 -9.4338 2.0415 23 6 -2.0879 -10.0789 1.6180 24 6 -1.8642 -8.5808 1.4019 25 6 2.2259 -3.7031 -0.0012 26 1 -0.4850 0.8400 0.0004 27 1 1.0755 -2.3016 2.1726 28 1 -0.4922 -2.2572 1.3011 29 1 -0.5769 -4.5759 1.0886 30 1 0.5412 -4.5578 2.4790 31 1 0.8960 -7.0275 2.1665 32 1 -0.2097 -7.0183 0.7716 33 1 2.6589 -10.1238 1.5691 34 1 1.8574 -9.0385 2.8267 35 1 -0.5881 -9.3061 3.1091 36 1 -2.0747 -10.7221 0.7381 37 1 -2.7786 -10.3759 2.4071 38 1 -2.4078 -7.8924 2.0489 39 1 -1.7037 -8.2377 0.3798 40 1 2.5186 -3.9536 -1.0209 41 1 3.1054 -3.4794 0.6027 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712929046.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:15 Heat of formation + Delta-G solvation = -12.927004 kcal Electronic energy + Delta-G solvation = -19758.932916 eV Core-core repulsion = 16832.124731 eV Total energy + Delta-G solvation = -2926.808185 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.09218 -39.60977 -38.27879 -36.05937 -34.96531 -32.45503 -30.51642 -29.81906 -26.75315 -24.61896 -24.02745 -23.13735 -22.36814 -21.60992 -20.53373 -19.69043 -18.63700 -18.00227 -16.91287 -16.83955 -16.51976 -16.29853 -15.59920 -15.26323 -14.97385 -14.39011 -14.28202 -13.95329 -13.65973 -13.48424 -13.20573 -12.98382 -12.87984 -12.60919 -12.39271 -12.28986 -12.26660 -12.19473 -11.65902 -11.59934 -11.53638 -11.34027 -10.97494 -10.80598 -10.60386 -10.51399 -10.33675 -9.54997 -8.16609 -6.26122 1.43122 1.44805 1.54348 1.67040 2.10147 2.44442 2.71348 3.11508 3.15675 3.61190 3.61983 3.90075 4.01090 4.07225 4.14973 4.24183 4.31163 4.36243 4.43744 4.50272 4.57163 4.63770 4.73804 4.74972 4.80175 4.81748 4.88801 4.97007 5.09554 5.10555 5.26687 5.29512 5.33414 5.35338 5.40020 5.41310 5.56479 5.76138 5.86419 6.27273 6.69294 6.80398 7.20221 7.41828 8.93164 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.036568 B = 0.003881 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.503867 B = 7212.363011 C = 7748.336206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.022 3.978 3 Si 0.955 3.045 4 H -0.279 1.279 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.535 4.535 8 H 0.054 0.946 9 C 0.039 3.961 10 H 0.011 0.989 11 C -0.105 4.105 12 C 0.105 3.895 13 N -0.618 5.618 14 C 0.516 3.484 15 O -0.596 6.596 16 C -0.089 4.089 17 C -0.150 4.150 18 H 0.090 0.910 19 C -0.165 4.165 20 C -0.106 4.106 21 H 0.110 0.890 22 C -0.128 4.128 23 C -0.171 4.171 24 C -0.186 4.186 25 C 0.117 3.883 26 H 0.264 0.736 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.043 0.957 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.720 -17.339 7.303 19.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.178 4.178 3 Si 0.781 3.219 4 H -0.205 1.205 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.574 4.574 8 H 0.072 0.928 9 C 0.020 3.980 10 H 0.029 0.971 11 C -0.143 4.143 12 C -0.017 4.017 13 N -0.350 5.350 14 C 0.307 3.693 15 O -0.478 6.478 16 C -0.128 4.128 17 C -0.169 4.169 18 H 0.108 0.892 19 C -0.202 4.202 20 C -0.124 4.124 21 H 0.128 0.872 22 C -0.146 4.146 23 C -0.208 4.208 24 C -0.222 4.222 25 C -0.006 4.006 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.132 0.868 36 H 0.112 0.888 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.105 0.895 40 H 0.062 0.938 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.402 -17.486 6.935 19.319 hybrid contribution 0.574 1.277 -0.471 1.477 sum -3.828 -16.208 6.464 17.865 Atomic orbital electron populations 1.70038 1.07053 1.27578 1.50526 1.25657 0.95676 1.02155 0.94358 0.85605 0.78807 0.79383 0.78153 1.20451 1.20561 1.19335 1.21259 0.93001 0.91314 1.51797 0.92811 1.19734 0.92909 0.91219 0.94134 0.97082 1.22426 1.00990 0.92173 0.98725 1.22240 0.90196 0.94480 0.94736 1.48838 1.33395 1.05092 1.47687 1.21139 0.84838 0.82163 0.81182 1.90615 1.35017 1.80582 1.41543 1.21191 0.99494 0.90418 1.01665 1.22005 1.05119 0.90250 0.99542 0.89167 1.23206 0.96752 1.02515 0.97749 1.21906 0.90935 0.98139 1.01455 0.87173 1.21749 0.88296 1.05611 0.98956 1.23047 0.98681 0.95466 1.03613 1.23061 1.02612 0.94474 1.02092 1.22235 0.95345 0.86646 0.96346 0.92740 0.92825 0.91650 0.90320 0.89414 0.87135 0.86990 0.88412 0.87760 0.86770 0.88758 0.87672 0.87775 0.89500 0.93810 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.68 12.62 21.45 0.27 -50.41 16 2 C 0.02 1.15 5.37 84.65 0.45 1.61 16 3 Si 0.95 42.48 29.54 68.60 2.03 44.51 16 4 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.54 -28.89 8.49 25.60 0.22 -28.67 16 8 H 0.05 2.89 7.77 -2.91 -0.02 2.86 16 9 C 0.04 1.93 2.85 -10.15 -0.03 1.90 16 10 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 11 C -0.10 -4.41 5.90 31.78 0.19 -4.22 16 12 C 0.11 3.42 6.49 86.73 0.56 3.98 16 13 N -0.62 -23.33 3.33 -811.79 -2.70 -26.03 16 14 C 0.52 18.56 7.85 87.66 0.69 19.25 16 15 O -0.60 -26.11 15.82 -3.02 -0.05 -26.16 16 16 C -0.09 -2.20 4.13 29.85 0.12 -2.08 16 17 C -0.15 -3.60 5.40 -10.79 -0.06 -3.66 16 18 H 0.09 2.66 7.31 -2.39 -0.02 2.65 16 19 C -0.17 -3.17 9.90 30.60 0.30 -2.86 16 20 C -0.11 -1.90 5.87 -10.79 -0.06 -1.96 16 21 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 22 C -0.13 -1.94 5.25 -10.79 -0.06 -2.00 16 23 C -0.17 -2.31 10.25 30.59 0.31 -2.00 16 24 C -0.19 -2.87 8.44 30.59 0.26 -2.61 16 25 C 0.12 5.23 6.35 86.86 0.55 5.79 16 26 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 27 H 0.05 2.30 8.03 -2.39 -0.02 2.28 16 28 H 0.06 2.92 7.85 -2.39 -0.02 2.90 16 29 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.11 2.29 7.88 -2.39 -0.02 2.27 16 32 H 0.11 2.48 5.63 -2.39 -0.01 2.47 16 33 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.10 1.78 8.03 -2.39 -0.02 1.76 16 35 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.09 1.54 7.30 -2.39 -0.02 1.52 16 40 H 0.04 2.06 8.04 -2.39 -0.02 2.04 16 41 H 0.05 2.39 8.01 -2.39 -0.02 2.37 16 Total: -1.00 -63.33 332.59 3.99 -59.34 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 0.99 Total: 16.28 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: 3.45 Total: -17.53 kcal Atomic # 7 Polarization: -74.01 SS G_CDS: -2.43 Total: -76.44 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.05 Total: -26.16 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -63.33 3.99 -59.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712929046.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.413 kcal (2) G-P(sol) polarization free energy of solvation -63.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds