Wall clock time and date at job start Mon Mar 30 2020 06:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.08000 * 119.99535 * 359.72167 * 7 2 1 9 9 C 1.50694 * 119.99902 * 179.72330 * 7 2 1 10 10 H 1.09005 * 110.88927 * 56.11953 * 9 7 2 11 11 C 1.55156 * 111.00529 * 292.19636 * 9 7 2 12 12 C 1.54329 * 102.94390 * 206.42584 * 11 9 7 13 13 N 1.47027 * 107.26840 * 22.19276 * 12 11 9 14 14 C 1.34773 * 125.64577 * 181.02826 * 13 12 11 15 15 O 1.21289 * 120.00037 * 180.02562 * 14 13 12 16 16 C 1.50698 * 120.00173 * 0.03666 * 14 13 12 17 17 C 1.53002 * 109.47410 * 179.97438 * 16 14 13 18 18 H 1.09002 * 115.54667 * 29.27881 * 17 16 14 19 19 C 1.52993 * 117.50324 * 243.60942 * 17 16 14 20 20 C 1.52996 * 117.50086 * 174.98342 * 17 16 14 21 21 H 1.09007 * 117.49880 * 0.02562 * 20 17 16 22 22 C 1.52998 * 117.50210 * 214.98233 * 20 17 16 23 23 C 1.52994 * 117.50102 * 128.74657 * 22 20 17 24 24 C 1.53002 * 117.49819 * 60.08880 * 22 20 17 25 25 C 1.47422 * 108.70480 * 1.05628 * 13 12 11 26 26 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 27 27 H 1.09001 * 110.71642 * 324.78276 * 11 9 7 28 28 H 1.08993 * 110.72120 * 88.06076 * 11 9 7 29 29 H 1.08996 * 109.87981 * 262.77653 * 12 11 9 30 30 H 1.08996 * 109.88512 * 141.60755 * 12 11 9 31 31 H 1.09000 * 109.47313 * 300.00125 * 16 14 13 32 32 H 1.09006 * 109.47187 * 60.00289 * 16 14 13 33 33 H 1.09004 * 117.49932 * 359.97438 * 19 17 16 34 34 H 1.08995 * 117.50417 * 145.01779 * 19 17 16 35 35 H 1.09001 * 115.54747 * 274.42257 * 22 20 17 36 36 H 1.09004 * 117.49798 * 0.02562 * 23 22 20 37 37 H 1.09006 * 117.49908 * 145.02265 * 23 22 20 38 38 H 1.09002 * 117.49622 * 214.98465 * 24 22 20 39 39 H 1.08999 * 117.49888 * 359.97438 * 24 22 20 40 40 H 1.08997 * 110.37082 * 217.03589 * 25 13 12 41 41 H 1.08997 * 110.36470 * 94.71146 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1941 -0.0121 10 1 3.9037 -0.6285 0.8331 11 6 4.0620 -0.6437 -1.3542 12 6 5.4429 -1.3237 -1.4663 13 7 5.4060 -2.5280 -0.6237 14 6 6.4273 -3.3872 -0.4366 15 8 6.2835 -4.3526 0.2834 16 6 7.7481 -3.1485 -1.1218 17 6 8.7276 -4.2612 -0.7434 18 1 8.2766 -5.2270 -0.5153 19 6 9.9800 -3.8637 0.0404 20 6 10.0939 -4.2641 -1.4319 21 1 10.2952 -3.4729 -2.1542 22 6 10.7230 -5.6225 -1.7479 23 6 11.2105 -5.8596 -3.1786 24 6 9.9475 -6.5618 -2.6738 25 6 4.0667 -2.6403 -0.0179 26 1 -0.4849 0.8401 0.0041 27 1 3.4192 -0.9372 -2.1841 28 1 4.1683 0.4403 -1.3119 29 1 6.2195 -0.6464 -1.1111 30 1 5.6361 -1.6019 -2.5023 31 1 7.6017 -3.1447 -2.2020 32 1 8.1523 -2.1864 -0.8066 33 1 10.1064 -2.8093 0.2861 34 1 10.3531 -4.5680 0.7839 35 1 11.2973 -6.0741 -0.9391 36 1 11.0834 -5.0476 -3.8946 37 1 12.1055 -6.4676 -3.3111 38 1 10.0121 -7.6315 -2.4743 39 1 8.9891 -6.2122 -3.0575 40 1 4.1417 -3.0220 1.0003 41 1 3.4308 -3.2883 -0.6210 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712929047.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:19 Heat of formation + Delta-G solvation = 5.208045 kcal Electronic energy + Delta-G solvation = -19504.448536 eV Core-core repulsion = 16578.426746 eV Total energy + Delta-G solvation = -2926.021790 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.78821 -38.63209 -36.96300 -35.47314 -33.02459 -31.16227 -29.41072 -28.48626 -25.05940 -23.78501 -22.66153 -22.47015 -21.21633 -19.96221 -19.70529 -18.79161 -17.04070 -16.76021 -15.89326 -15.69184 -15.29392 -14.73336 -14.39267 -14.19302 -13.81564 -13.17702 -13.05503 -12.72158 -12.52474 -12.25588 -11.86612 -11.82082 -11.63650 -11.60074 -11.32294 -11.01043 -11.00250 -10.80424 -10.78921 -10.23057 -10.01823 -9.95271 -9.70844 -9.67710 -9.36372 -9.18964 -8.65120 -8.14856 -6.16345 -4.17370 2.96931 3.19900 3.27448 3.30234 3.31677 3.52984 3.81200 4.32730 4.36435 4.61247 4.63967 4.78684 4.85905 5.02786 5.10026 5.12730 5.28757 5.32682 5.40035 5.42511 5.50186 5.50417 5.66515 5.67038 5.71199 5.73055 5.90040 5.97245 5.98293 6.04739 6.11083 6.31255 6.41336 6.54057 6.64862 6.71835 6.89109 7.31858 7.62103 7.99306 8.41024 8.53575 8.86876 9.44410 10.96460 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.043158 B = 0.003592 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.617410 B = 7794.183782 C = 7948.972653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.074 3.926 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.291 1.291 6 H -0.264 1.264 7 C -0.512 4.512 8 H 0.078 0.922 9 C 0.008 3.992 10 H 0.042 0.958 11 C -0.140 4.140 12 C 0.100 3.900 13 N -0.616 5.616 14 C 0.524 3.476 15 O -0.550 6.550 16 C -0.107 4.107 17 C -0.126 4.126 18 H 0.120 0.880 19 C -0.169 4.169 20 C -0.125 4.125 21 H 0.104 0.896 22 C -0.123 4.123 23 C -0.179 4.179 24 C -0.176 4.176 25 C 0.119 3.881 26 H 0.265 0.735 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.067 0.933 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.840 -5.309 -5.899 22.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.128 4.128 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.550 4.550 8 H 0.096 0.904 9 C -0.012 4.012 10 H 0.060 0.940 11 C -0.178 4.178 12 C -0.023 4.023 13 N -0.350 5.350 14 C 0.313 3.687 15 O -0.428 6.428 16 C -0.147 4.147 17 C -0.145 4.145 18 H 0.138 0.862 19 C -0.206 4.206 20 C -0.143 4.143 21 H 0.122 0.878 22 C -0.141 4.141 23 C -0.216 4.216 24 C -0.213 4.213 25 C -0.002 4.002 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.122 0.878 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.085 0.915 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 20.648 -5.755 -5.511 22.132 hybrid contribution 0.357 1.123 -0.122 1.185 sum 21.005 -4.632 -5.632 22.235 Atomic orbital electron populations 1.69894 1.06287 1.27111 1.50125 1.24965 0.94663 0.98985 0.94212 0.86903 0.80279 0.83718 0.78486 1.20118 1.21739 1.18905 1.20813 0.87813 0.94818 1.51529 0.90440 1.20369 0.97077 0.91012 0.92738 0.93962 1.23089 0.93471 0.98839 1.02433 1.22093 0.99872 0.86533 0.93771 1.48742 1.13370 1.25189 1.47653 1.20114 0.84742 0.82059 0.81817 1.90662 1.83173 1.29510 1.39479 1.21204 0.92770 0.99290 1.01396 1.22173 0.88150 1.00710 1.03435 0.86227 1.23142 1.01895 1.01890 0.93666 1.21882 0.99763 0.96705 0.95933 0.87757 1.21734 1.03122 0.95594 0.93649 1.22985 0.98261 1.03513 0.96814 1.22980 0.96334 0.98067 1.03929 1.22374 0.80446 0.99759 0.97665 0.92478 0.90240 0.92065 0.92403 0.92234 0.88895 0.89151 0.88824 0.88746 0.87811 0.88820 0.88998 0.88933 0.88508 0.91500 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.56 13.96 55.43 0.77 -25.79 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 20.52 24.95 -169.99 -4.24 16.28 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.26 -5.90 6.44 56.52 0.36 -5.53 16 7 C -0.51 -13.74 9.07 -34.44 -0.31 -14.05 16 8 H 0.08 2.27 8.01 -52.49 -0.42 1.85 16 9 C 0.01 0.17 2.39 -89.63 -0.21 -0.04 16 10 H 0.04 0.98 6.99 -51.93 -0.36 0.61 16 11 C -0.14 -2.68 5.41 -24.89 -0.13 -2.82 16 12 C 0.10 1.57 6.49 -3.06 -0.02 1.55 16 13 N -0.62 -11.03 3.33 -170.52 -0.57 -11.60 16 14 C 0.52 8.99 7.85 -10.99 -0.09 8.90 16 15 O -0.55 -11.32 15.82 5.55 0.09 -11.23 16 16 C -0.11 -1.31 5.17 -27.88 -0.14 -1.46 16 17 C -0.13 -1.50 5.06 -90.62 -0.46 -1.96 16 18 H 0.12 1.69 7.30 -51.93 -0.38 1.31 16 19 C -0.17 -1.72 9.90 -26.74 -0.26 -1.99 16 20 C -0.12 -1.19 5.59 -90.62 -0.51 -1.70 16 21 H 0.10 0.91 8.14 -51.92 -0.42 0.49 16 22 C -0.12 -1.10 5.87 -90.62 -0.53 -1.63 16 23 C -0.18 -1.40 10.25 -26.70 -0.27 -1.67 16 24 C -0.18 -1.56 10.18 -26.70 -0.27 -1.83 16 25 C 0.12 2.47 6.35 -2.53 -0.02 2.45 16 26 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.08 1.56 8.03 -51.93 -0.42 1.14 16 28 H 0.06 1.15 5.72 -51.93 -0.30 0.85 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.09 0.98 7.87 -51.93 -0.41 0.57 16 33 H 0.09 0.88 8.03 -51.93 -0.42 0.46 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.07 1.43 8.04 -51.93 -0.42 1.02 16 41 H 0.07 1.40 8.01 -51.93 -0.42 0.99 16 LS Contribution 331.48 15.07 5.00 5.00 Total: -1.00 -30.33 331.48 -9.22 -39.55 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -6.94 Total: 2.08 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -3.33 Total: -14.29 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.21 Total: -37.39 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.24 Total: 16.28 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.33 -9.22 -39.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712929047.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.761 kcal (2) G-P(sol) polarization free energy of solvation -30.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds