Wall clock time and date at job start Mon Mar 30 2020 06:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.08000 * 119.99535 * 359.72167 * 7 2 1 9 9 C 1.50694 * 119.99902 * 179.72330 * 7 2 1 10 10 H 1.09005 * 110.88927 * 56.11953 * 9 7 2 11 11 C 1.55156 * 111.00529 * 292.19636 * 9 7 2 12 12 C 1.54329 * 102.94390 * 206.42584 * 11 9 7 13 13 N 1.47027 * 107.26840 * 22.19276 * 12 11 9 14 14 C 1.34773 * 125.64577 * 181.02826 * 13 12 11 15 15 O 1.21289 * 120.00037 * 180.02562 * 14 13 12 16 16 C 1.50698 * 120.00173 * 0.03666 * 14 13 12 17 17 C 1.53002 * 109.47410 * 179.97438 * 16 14 13 18 18 H 1.09002 * 115.54667 * 29.27881 * 17 16 14 19 19 C 1.52993 * 117.50324 * 243.60942 * 17 16 14 20 20 C 1.52996 * 117.50086 * 174.98342 * 17 16 14 21 21 H 1.09007 * 117.49880 * 0.02562 * 20 17 16 22 22 C 1.52998 * 117.50210 * 214.98233 * 20 17 16 23 23 C 1.52994 * 117.50102 * 128.74657 * 22 20 17 24 24 C 1.53002 * 117.49819 * 60.08880 * 22 20 17 25 25 C 1.47422 * 108.70480 * 1.05628 * 13 12 11 26 26 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 27 27 H 1.09001 * 110.71642 * 324.78276 * 11 9 7 28 28 H 1.08993 * 110.72120 * 88.06076 * 11 9 7 29 29 H 1.08996 * 109.87981 * 262.77653 * 12 11 9 30 30 H 1.08996 * 109.88512 * 141.60755 * 12 11 9 31 31 H 1.09000 * 109.47313 * 300.00125 * 16 14 13 32 32 H 1.09006 * 109.47187 * 60.00289 * 16 14 13 33 33 H 1.09004 * 117.49932 * 359.97438 * 19 17 16 34 34 H 1.08995 * 117.50417 * 145.01779 * 19 17 16 35 35 H 1.09001 * 115.54747 * 274.42257 * 22 20 17 36 36 H 1.09004 * 117.49798 * 0.02562 * 23 22 20 37 37 H 1.09006 * 117.49908 * 145.02265 * 23 22 20 38 38 H 1.09002 * 117.49622 * 214.98465 * 24 22 20 39 39 H 1.08999 * 117.49888 * 359.97438 * 24 22 20 40 40 H 1.08997 * 110.37082 * 217.03589 * 25 13 12 41 41 H 1.08997 * 110.36470 * 94.71146 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1941 -0.0121 10 1 3.9037 -0.6285 0.8331 11 6 4.0620 -0.6437 -1.3542 12 6 5.4429 -1.3237 -1.4663 13 7 5.4060 -2.5280 -0.6237 14 6 6.4273 -3.3872 -0.4366 15 8 6.2835 -4.3526 0.2834 16 6 7.7481 -3.1485 -1.1218 17 6 8.7276 -4.2612 -0.7434 18 1 8.2766 -5.2270 -0.5153 19 6 9.9800 -3.8637 0.0404 20 6 10.0939 -4.2641 -1.4319 21 1 10.2952 -3.4729 -2.1542 22 6 10.7230 -5.6225 -1.7479 23 6 11.2105 -5.8596 -3.1786 24 6 9.9475 -6.5618 -2.6738 25 6 4.0667 -2.6403 -0.0179 26 1 -0.4849 0.8401 0.0041 27 1 3.4192 -0.9372 -2.1841 28 1 4.1683 0.4403 -1.3119 29 1 6.2195 -0.6464 -1.1111 30 1 5.6361 -1.6019 -2.5023 31 1 7.6017 -3.1447 -2.2020 32 1 8.1523 -2.1864 -0.8066 33 1 10.1064 -2.8093 0.2861 34 1 10.3531 -4.5680 0.7839 35 1 11.2973 -6.0741 -0.9391 36 1 11.0834 -5.0476 -3.8946 37 1 12.1055 -6.4676 -3.3111 38 1 10.0121 -7.6315 -2.4743 39 1 8.9891 -6.2122 -3.0575 40 1 4.1417 -3.0220 1.0003 41 1 3.4308 -3.2883 -0.6210 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712929047.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:18 Heat of formation + Delta-G solvation = -12.073025 kcal Electronic energy + Delta-G solvation = -19505.197899 eV Core-core repulsion = 16578.426746 eV Total energy + Delta-G solvation = -2926.771154 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.09339 -39.53638 -38.39878 -36.26482 -34.96157 -32.85691 -30.60691 -29.96271 -26.84574 -24.56398 -23.95055 -23.25348 -22.21066 -21.45719 -20.66603 -20.11819 -18.93495 -18.06303 -17.14778 -16.67757 -16.41103 -16.20751 -15.88152 -15.33344 -14.85085 -14.73028 -14.34041 -14.22812 -13.78669 -13.73270 -13.15975 -13.08996 -12.81825 -12.56527 -12.50067 -12.32134 -12.13846 -11.96930 -11.74874 -11.64415 -11.53487 -11.48685 -11.16814 -10.90172 -10.72478 -10.71095 -10.30972 -9.59421 -8.29463 -6.36414 1.35896 1.41290 1.51100 1.66253 2.04599 2.36054 2.68716 3.04494 3.10328 3.54144 3.67216 3.85556 3.89658 3.99964 4.10123 4.18555 4.22093 4.26785 4.37892 4.42527 4.52361 4.58294 4.65009 4.71257 4.73113 4.80624 4.83195 4.92087 4.96085 5.06264 5.13954 5.17136 5.27219 5.28271 5.30387 5.32523 5.45331 5.53830 5.66417 6.25954 6.65115 6.69268 7.18689 7.29500 8.87263 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.043158 B = 0.003592 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.617410 B = 7794.183782 C = 7948.972653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.014 3.986 3 Si 0.946 3.054 4 H -0.252 1.252 5 H -0.297 1.297 6 H -0.242 1.242 7 C -0.520 4.520 8 H 0.029 0.971 9 C 0.005 3.995 10 H 0.041 0.959 11 C -0.137 4.137 12 C 0.105 3.895 13 N -0.619 5.619 14 C 0.518 3.482 15 O -0.594 6.594 16 C -0.092 4.092 17 C -0.148 4.148 18 H 0.087 0.913 19 C -0.169 4.169 20 C -0.103 4.103 21 H 0.123 0.877 22 C -0.136 4.136 23 C -0.164 4.164 24 C -0.189 4.189 25 C 0.125 3.875 26 H 0.267 0.733 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.048 0.952 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.681 -3.245 -7.525 26.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.184 4.184 3 Si 0.770 3.230 4 H -0.176 1.176 5 H -0.224 1.224 6 H -0.165 1.165 7 C -0.558 4.558 8 H 0.048 0.952 9 C -0.014 4.014 10 H 0.059 0.941 11 C -0.175 4.175 12 C -0.017 4.017 13 N -0.352 5.352 14 C 0.309 3.691 15 O -0.476 6.476 16 C -0.131 4.131 17 C -0.167 4.167 18 H 0.106 0.894 19 C -0.206 4.206 20 C -0.121 4.121 21 H 0.141 0.859 22 C -0.154 4.154 23 C -0.201 4.201 24 C -0.226 4.226 25 C 0.002 3.998 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.126 0.874 34 H 0.109 0.891 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.112 0.888 39 H 0.106 0.894 40 H 0.067 0.933 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 24.525 -3.698 -7.162 25.816 hybrid contribution -0.920 0.314 0.434 1.064 sum 23.606 -3.384 -6.728 24.778 Atomic orbital electron populations 1.70063 1.08510 1.28304 1.52120 1.25918 0.95435 1.03339 0.93673 0.85811 0.79430 0.77889 0.79861 1.17617 1.22356 1.16500 1.21044 0.90527 0.93157 1.51051 0.95227 1.20227 0.93976 0.92286 0.94956 0.94057 1.22951 0.95410 0.99833 0.99328 1.22248 0.98292 0.85669 0.95480 1.48813 1.12110 1.26425 1.47880 1.21110 0.85915 0.80903 0.81152 1.90647 1.84042 1.31381 1.41522 1.21224 0.89349 1.00459 1.02092 1.22026 0.89078 0.99464 1.06092 0.89427 1.23243 1.00425 1.02667 0.94234 1.21940 0.97075 0.97282 0.95831 0.85907 1.21820 1.03546 0.95540 0.94485 1.23071 0.97856 1.03318 0.95818 1.22996 0.96609 0.98342 1.04649 1.22006 0.82479 0.98566 0.96727 0.92387 0.91296 0.90748 0.88882 0.88758 0.86456 0.86437 0.87385 0.89093 0.87735 0.87941 0.87812 0.88756 0.89434 0.93326 0.93467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.33 13.96 21.45 0.30 -58.03 16 2 C 0.01 0.77 5.47 84.66 0.46 1.23 16 3 Si 0.95 41.43 24.95 68.60 1.71 43.14 16 4 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 5 H -0.30 -13.22 7.11 99.48 0.71 -12.52 16 6 H -0.24 -9.62 6.44 99.48 0.64 -8.98 16 7 C -0.52 -28.97 9.07 25.60 0.23 -28.73 16 8 H 0.03 1.86 8.01 -2.91 -0.02 1.84 16 9 C 0.01 0.23 2.39 -10.15 -0.02 0.20 16 10 H 0.04 1.85 6.99 -2.38 -0.02 1.83 16 11 C -0.14 -4.86 5.41 31.78 0.17 -4.69 16 12 C 0.10 2.80 6.49 86.73 0.56 3.36 16 13 N -0.62 -21.01 3.33 -811.79 -2.70 -23.71 16 14 C 0.52 16.97 7.85 87.66 0.69 17.66 16 15 O -0.59 -24.86 15.82 -3.06 -0.05 -24.91 16 16 C -0.09 -1.93 5.17 29.85 0.15 -1.78 16 17 C -0.15 -3.22 5.06 -10.80 -0.05 -3.28 16 18 H 0.09 2.50 7.30 -2.39 -0.02 2.49 16 19 C -0.17 -3.01 9.90 30.59 0.30 -2.70 16 20 C -0.10 -1.66 5.59 -10.80 -0.06 -1.72 16 21 H 0.12 1.55 8.14 -2.38 -0.02 1.53 16 22 C -0.14 -2.14 5.87 -10.80 -0.06 -2.20 16 23 C -0.16 -2.10 10.25 30.61 0.31 -1.79 16 24 C -0.19 -3.08 10.18 30.62 0.31 -2.77 16 25 C 0.13 5.31 6.35 86.86 0.55 5.86 16 26 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 27 H 0.07 2.58 8.03 -2.39 -0.02 2.56 16 28 H 0.07 2.45 5.72 -2.39 -0.01 2.44 16 29 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.12 1.89 7.87 -2.38 -0.02 1.87 16 33 H 0.11 1.62 8.03 -2.38 -0.02 1.60 16 34 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.05 2.19 8.04 -2.39 -0.02 2.17 16 41 H 0.05 2.13 8.01 -2.39 -0.02 2.11 16 Total: -1.00 -70.29 331.48 3.73 -66.55 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.92 Total: 18.29 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: 3.55 Total: -21.34 kcal Atomic # 7 Polarization: -79.34 SS G_CDS: -2.40 Total: -81.74 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.05 Total: -24.91 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 1.71 Total: 43.14 kcal Total: -70.29 3.73 -66.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712929047.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.480 kcal (2) G-P(sol) polarization free energy of solvation -70.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds