Wall clock time and date at job start Mon Mar 30 2020 06:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86802 * 119.99708 * 2 1 4 4 H 1.48496 * 109.47128 * 269.99725 * 3 2 1 5 5 H 1.48493 * 109.47343 * 30.00265 * 3 2 1 6 6 H 1.48501 * 109.46637 * 150.00293 * 3 2 1 7 7 C 1.37870 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00004 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00225 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.88341 * 303.87512 * 9 7 2 11 11 C 1.55153 * 111.04059 * 67.78023 * 9 7 2 12 12 C 1.54329 * 103.02064 * 153.39765 * 11 9 7 13 13 N 1.47020 * 107.26698 * 338.13778 * 12 11 9 14 14 C 1.34771 * 125.64949 * 178.84739 * 13 12 11 15 15 O 1.21282 * 120.00477 * 179.69504 * 14 13 12 16 16 C 1.50705 * 120.00283 * 359.69922 * 14 13 12 17 17 C 1.52999 * 109.47389 * 179.97438 * 16 14 13 18 18 H 1.08999 * 115.56286 * 29.30715 * 17 16 14 19 19 C 1.53000 * 117.49573 * 243.61890 * 17 16 14 20 20 C 1.52993 * 59.99941 * 252.50996 * 19 17 16 21 21 H 1.09001 * 117.49992 * 107.51460 * 20 19 17 22 22 C 1.53003 * 117.50112 * 252.51053 * 20 19 17 23 23 C 1.53001 * 117.51964 * 179.89445 * 22 20 19 24 24 C 1.52999 * 60.00190 * 107.47982 * 23 22 20 25 25 C 1.47432 * 108.70221 * 358.58811 * 13 12 11 26 26 H 0.97005 * 119.99592 * 0.02562 * 1 2 3 27 27 H 1.08997 * 110.71763 * 271.95864 * 11 9 7 28 28 H 1.09005 * 110.71554 * 35.22593 * 11 9 7 29 29 H 1.09004 * 109.98789 * 218.66904 * 12 11 9 30 30 H 1.08999 * 109.78112 * 97.50034 * 12 11 9 31 31 H 1.08991 * 109.46853 * 59.99346 * 16 14 13 32 32 H 1.09001 * 109.46439 * 299.99879 * 16 14 13 33 33 H 1.09004 * 117.49619 * 145.01900 * 19 17 16 34 34 H 1.08998 * 117.52013 * 359.97438 * 19 17 16 35 35 H 1.09002 * 115.54973 * 34.19229 * 22 20 19 36 36 H 1.09001 * 117.49733 * 214.97413 * 23 22 20 37 37 H 1.08995 * 117.49577 * 359.97438 * 23 22 20 38 38 H 1.09004 * 117.50150 * 252.51496 * 24 23 22 39 39 H 1.09004 * 117.49681 * 107.48417 * 24 23 22 40 40 H 1.09005 * 110.36194 * 143.19011 * 25 13 12 41 41 H 1.08996 * 110.36201 * 265.40397 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.5648 -2.5516 0.8458 11 6 0.4988 -2.7081 -1.3403 12 6 0.4006 -4.2444 -1.4481 13 7 1.4587 -4.8101 -0.5984 14 6 1.6922 -6.1231 -0.4042 15 8 2.6004 -6.4774 0.3173 16 6 0.8249 -7.1514 -1.0836 17 6 1.2997 -8.5539 -0.6986 18 1 1.7645 -8.6400 0.2836 19 6 1.8390 -9.4487 -1.8163 20 6 0.4719 -9.7410 -1.1948 21 1 -0.4111 -9.5232 -1.7957 22 6 0.3598 -10.9581 -0.2744 23 6 -1.0066 -11.2493 0.3492 24 6 -0.4701 -12.1443 -0.7697 25 6 2.2259 -3.7030 0.0011 26 1 -0.4850 0.8401 -0.0004 27 1 -0.4930 -2.2578 -1.3002 28 1 1.0742 -2.3026 -2.1725 29 1 0.5497 -4.5556 -2.4821 30 1 -0.5756 -4.5774 -1.0957 31 1 0.8946 -7.0285 -2.1643 32 1 -0.2102 -7.0186 -0.7689 33 1 2.6587 -10.1235 -1.5694 34 1 1.8553 -9.0387 -2.8261 35 1 1.2435 -11.1773 0.3248 36 1 -1.0218 -11.6601 1.3588 37 1 -1.8260 -10.5736 0.1042 38 1 -0.9364 -12.0574 -1.7511 39 1 -0.1322 -13.1439 -0.4963 40 1 2.5191 -3.9533 1.0207 41 1 3.1059 -3.4810 -0.6024 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712948164.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:21 Heat of formation + Delta-G solvation = -1.745599 kcal Electronic energy + Delta-G solvation = -19327.061939 eV Core-core repulsion = 16400.738616 eV Total energy + Delta-G solvation = -2926.323323 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.63380 -38.49527 -36.75927 -35.52224 -33.04171 -30.76211 -29.12186 -28.21657 -24.88434 -23.76109 -22.62563 -22.37483 -20.90186 -20.21139 -19.72294 -18.58015 -16.86781 -16.41193 -15.71760 -15.58913 -15.25854 -14.61862 -14.42033 -13.85973 -13.73741 -13.22364 -12.69648 -12.55273 -12.23578 -11.90939 -11.80631 -11.63327 -11.51375 -11.32180 -11.27362 -11.14642 -11.04124 -10.78364 -10.72919 -10.48686 -9.88305 -9.83509 -9.56629 -9.48938 -9.20770 -9.00392 -8.48947 -7.98407 -6.12418 -4.15741 3.08969 3.26411 3.30815 3.33671 3.37461 3.60656 4.04620 4.31461 4.37977 4.65406 4.71303 4.86708 4.97505 5.09678 5.16035 5.20041 5.23748 5.43099 5.48734 5.59126 5.64057 5.67544 5.68466 5.76991 5.85330 5.90875 5.97987 6.01494 6.13308 6.25589 6.36076 6.37753 6.62813 6.81931 6.97818 7.09820 7.42588 7.69111 7.87413 8.15964 8.27736 8.66506 8.86651 9.49384 10.97797 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.050187 B = 0.003230 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.774783 B = 8667.687702 C = 8845.377216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.065 3.935 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.060 0.940 9 C 0.046 3.954 10 H 0.042 0.958 11 C -0.114 4.114 12 C 0.095 3.905 13 N -0.613 5.613 14 C 0.523 3.477 15 O -0.555 6.555 16 C -0.106 4.106 17 C -0.125 4.125 18 H 0.119 0.881 19 C -0.170 4.170 20 C -0.124 4.124 21 H 0.103 0.897 22 C -0.120 4.120 23 C -0.178 4.178 24 C -0.180 4.180 25 C 0.107 3.893 26 H 0.262 0.738 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.061 0.939 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.950 -17.838 -4.477 18.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.078 0.922 9 C 0.027 3.973 10 H 0.060 0.940 11 C -0.152 4.152 12 C -0.028 4.028 13 N -0.346 5.346 14 C 0.311 3.689 15 O -0.435 6.435 16 C -0.146 4.146 17 C -0.144 4.144 18 H 0.136 0.864 19 C -0.207 4.207 20 C -0.142 4.142 21 H 0.121 0.879 22 C -0.138 4.138 23 C -0.215 4.215 24 C -0.217 4.217 25 C -0.014 4.014 26 H 0.071 0.929 27 H 0.098 0.902 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.122 0.878 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.079 0.921 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.619 -17.972 -4.085 18.615 hybrid contribution 0.300 0.984 -0.156 1.041 sum -2.319 -16.987 -4.241 17.662 Atomic orbital electron populations 1.69950 1.05938 1.26790 1.49981 1.24961 0.94880 0.99178 0.94711 0.86553 0.79916 0.83178 0.78148 1.20626 1.21195 1.19799 1.20956 0.92982 0.89824 1.51539 0.92218 1.19836 0.92787 0.91082 0.93621 0.93969 1.22655 1.02598 0.89012 1.00939 1.22246 0.89828 0.97750 0.92931 1.48763 1.33352 1.05129 1.47332 1.20110 0.84935 0.82060 0.81799 1.90640 1.33019 1.80079 1.39737 1.21179 0.99994 0.92157 1.01224 1.22138 1.02868 0.89225 1.00129 0.86352 1.23097 0.96528 1.03235 0.97821 1.21853 0.95447 0.95396 1.01475 0.87883 1.21724 0.95372 0.95364 1.01384 1.22939 0.97382 1.03349 0.97841 1.22936 1.04482 0.95178 0.99060 1.22586 0.95611 0.86121 0.97078 0.92867 0.90219 0.92151 0.92938 0.92572 0.89236 0.88835 0.88792 0.88817 0.87812 0.88856 0.88691 0.88834 0.88963 0.92079 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.42 12.62 55.43 0.70 -23.72 16 2 C 0.07 1.73 5.37 -17.82 -0.10 1.64 16 3 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.51 -13.59 8.50 -34.44 -0.29 -13.88 16 8 H 0.06 1.57 7.77 -52.49 -0.41 1.16 16 9 C 0.05 1.10 2.85 -89.62 -0.26 0.85 16 10 H 0.04 1.11 8.14 -51.93 -0.42 0.68 16 11 C -0.11 -2.40 5.90 -24.90 -0.15 -2.55 16 12 C 0.10 1.64 6.49 -3.06 -0.02 1.62 16 13 N -0.61 -11.75 3.33 -170.51 -0.57 -12.32 16 14 C 0.52 9.53 7.85 -10.99 -0.09 9.45 16 15 O -0.56 -11.95 15.82 5.56 0.09 -11.86 16 16 C -0.11 -1.41 5.17 -27.88 -0.14 -1.55 16 17 C -0.13 -1.58 5.13 -90.62 -0.47 -2.05 16 18 H 0.12 1.75 7.30 -51.93 -0.38 1.37 16 19 C -0.17 -1.82 9.90 -26.73 -0.26 -2.08 16 20 C -0.12 -1.26 5.57 -90.62 -0.50 -1.76 16 21 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 22 C -0.12 -1.14 5.85 -90.61 -0.53 -1.67 16 23 C -0.18 -1.54 10.25 -26.73 -0.27 -1.81 16 24 C -0.18 -1.44 10.25 -26.73 -0.27 -1.72 16 25 C 0.11 2.34 6.34 -2.53 -0.02 2.33 16 26 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 27 H 0.08 1.78 7.85 -51.93 -0.41 1.37 16 28 H 0.06 1.31 8.03 -51.93 -0.42 0.89 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.09 1.04 7.87 -51.93 -0.41 0.64 16 32 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.09 0.92 8.03 -51.93 -0.42 0.51 16 35 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 1.37 8.04 -51.93 -0.42 0.96 16 41 H 0.06 1.27 8.02 -51.93 -0.42 0.86 16 LS Contribution 338.83 15.07 5.11 5.11 Total: -1.00 -28.95 338.83 -10.12 -39.07 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -7.06 Total: 1.29 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -3.37 Total: -13.20 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.13 Total: -36.04 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.09 Total: -11.86 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.95 -10.12 -39.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712948164.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.322 kcal (2) G-P(sol) polarization free energy of solvation -28.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds