Wall clock time and date at job start Mon Mar 30 2020 06:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86802 * 119.99708 * 2 1 4 4 H 1.48496 * 109.47128 * 269.99725 * 3 2 1 5 5 H 1.48493 * 109.47343 * 30.00265 * 3 2 1 6 6 H 1.48501 * 109.46637 * 150.00293 * 3 2 1 7 7 C 1.37870 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00004 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00225 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.88341 * 303.87512 * 9 7 2 11 11 C 1.55153 * 111.04059 * 67.78023 * 9 7 2 12 12 C 1.54329 * 103.02064 * 153.39765 * 11 9 7 13 13 N 1.47020 * 107.26698 * 338.13778 * 12 11 9 14 14 C 1.34771 * 125.64949 * 178.84739 * 13 12 11 15 15 O 1.21282 * 120.00477 * 179.69504 * 14 13 12 16 16 C 1.50705 * 120.00283 * 359.69922 * 14 13 12 17 17 C 1.52999 * 109.47389 * 179.97438 * 16 14 13 18 18 H 1.08999 * 115.56286 * 29.30715 * 17 16 14 19 19 C 1.53000 * 117.49573 * 243.61890 * 17 16 14 20 20 C 1.52993 * 59.99941 * 252.50996 * 19 17 16 21 21 H 1.09001 * 117.49992 * 107.51460 * 20 19 17 22 22 C 1.53003 * 117.50112 * 252.51053 * 20 19 17 23 23 C 1.53001 * 117.51964 * 179.89445 * 22 20 19 24 24 C 1.52999 * 60.00190 * 107.47982 * 23 22 20 25 25 C 1.47432 * 108.70221 * 358.58811 * 13 12 11 26 26 H 0.97005 * 119.99592 * 0.02562 * 1 2 3 27 27 H 1.08997 * 110.71763 * 271.95864 * 11 9 7 28 28 H 1.09005 * 110.71554 * 35.22593 * 11 9 7 29 29 H 1.09004 * 109.98789 * 218.66904 * 12 11 9 30 30 H 1.08999 * 109.78112 * 97.50034 * 12 11 9 31 31 H 1.08991 * 109.46853 * 59.99346 * 16 14 13 32 32 H 1.09001 * 109.46439 * 299.99879 * 16 14 13 33 33 H 1.09004 * 117.49619 * 145.01900 * 19 17 16 34 34 H 1.08998 * 117.52013 * 359.97438 * 19 17 16 35 35 H 1.09002 * 115.54973 * 34.19229 * 22 20 19 36 36 H 1.09001 * 117.49733 * 214.97413 * 23 22 20 37 37 H 1.08995 * 117.49577 * 359.97438 * 23 22 20 38 38 H 1.09004 * 117.50150 * 252.51496 * 24 23 22 39 39 H 1.09004 * 117.49681 * 107.48417 * 24 23 22 40 40 H 1.09005 * 110.36194 * 143.19011 * 25 13 12 41 41 H 1.08996 * 110.36201 * 265.40397 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.5648 -2.5516 0.8458 11 6 0.4988 -2.7081 -1.3403 12 6 0.4006 -4.2444 -1.4481 13 7 1.4587 -4.8101 -0.5984 14 6 1.6922 -6.1231 -0.4042 15 8 2.6004 -6.4774 0.3173 16 6 0.8249 -7.1514 -1.0836 17 6 1.2997 -8.5539 -0.6986 18 1 1.7645 -8.6400 0.2836 19 6 1.8390 -9.4487 -1.8163 20 6 0.4719 -9.7410 -1.1948 21 1 -0.4111 -9.5232 -1.7957 22 6 0.3598 -10.9581 -0.2744 23 6 -1.0066 -11.2493 0.3492 24 6 -0.4701 -12.1443 -0.7697 25 6 2.2259 -3.7030 0.0011 26 1 -0.4850 0.8401 -0.0004 27 1 -0.4930 -2.2578 -1.3002 28 1 1.0742 -2.3026 -2.1725 29 1 0.5497 -4.5556 -2.4821 30 1 -0.5756 -4.5774 -1.0957 31 1 0.8946 -7.0285 -2.1643 32 1 -0.2102 -7.0186 -0.7689 33 1 2.6587 -10.1235 -1.5694 34 1 1.8553 -9.0387 -2.8261 35 1 1.2435 -11.1773 0.3248 36 1 -1.0218 -11.6601 1.3588 37 1 -1.8260 -10.5736 0.1042 38 1 -0.9364 -12.0574 -1.7511 39 1 -0.1322 -13.1439 -0.4963 40 1 2.5191 -3.9533 1.0207 41 1 3.1059 -3.4810 -0.6024 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712948164.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:21 Heat of formation + Delta-G solvation = -15.888415 kcal Electronic energy + Delta-G solvation = -19327.675217 eV Core-core repulsion = 16400.738616 eV Total energy + Delta-G solvation = -2926.936601 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.03299 -39.45273 -38.29623 -36.37406 -34.96595 -32.43799 -30.47033 -29.79674 -26.74998 -24.55333 -24.00139 -23.17158 -22.03562 -21.46687 -20.98868 -19.99227 -18.61291 -17.95999 -16.90223 -16.80543 -16.54885 -16.29903 -15.59932 -15.32429 -14.70078 -14.34657 -14.26353 -14.18320 -13.51541 -13.47066 -13.12375 -12.95361 -12.90329 -12.59525 -12.53421 -12.35405 -12.29087 -12.07989 -12.05132 -11.63866 -11.49148 -11.34085 -10.98017 -10.87033 -10.66837 -10.51212 -10.21909 -9.54903 -8.16966 -6.26398 1.42758 1.44469 1.54078 1.67533 2.08928 2.44015 2.62117 3.15210 3.28404 3.47925 3.67268 3.90099 3.99968 4.06802 4.14191 4.29002 4.34089 4.37387 4.38526 4.43138 4.50037 4.54190 4.73041 4.74275 4.80262 4.82464 4.83700 4.96158 5.06927 5.09564 5.24450 5.26864 5.30621 5.32668 5.39692 5.45310 5.56446 5.76289 5.86314 6.27009 6.69590 6.80180 7.20537 7.41517 8.92792 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.050187 B = 0.003230 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.774783 B = 8667.687702 C = 8845.377216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.020 3.980 3 Si 0.955 3.045 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.053 0.947 9 C 0.040 3.960 10 H 0.011 0.989 11 C -0.105 4.105 12 C 0.105 3.895 13 N -0.618 5.618 14 C 0.517 3.483 15 O -0.596 6.596 16 C -0.092 4.092 17 C -0.149 4.149 18 H 0.087 0.913 19 C -0.167 4.167 20 C -0.102 4.102 21 H 0.120 0.880 22 C -0.141 4.141 23 C -0.181 4.181 24 C -0.166 4.166 25 C 0.117 3.883 26 H 0.264 0.736 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.043 0.957 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.871 -19.012 -6.278 20.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.179 4.179 3 Si 0.781 3.219 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.072 0.928 9 C 0.020 3.980 10 H 0.029 0.971 11 C -0.144 4.144 12 C -0.017 4.017 13 N -0.350 5.350 14 C 0.308 3.692 15 O -0.478 6.478 16 C -0.131 4.131 17 C -0.168 4.168 18 H 0.106 0.894 19 C -0.204 4.204 20 C -0.120 4.120 21 H 0.138 0.862 22 C -0.159 4.159 23 C -0.218 4.218 24 C -0.203 4.203 25 C -0.006 4.006 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.110 0.890 34 H 0.126 0.874 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.061 0.939 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.553 -19.161 -5.900 20.361 hybrid contribution 0.612 1.316 0.474 1.526 sum -2.941 -17.845 -5.426 18.882 Atomic orbital electron populations 1.70045 1.07047 1.27567 1.50567 1.25667 0.95693 1.02189 0.94394 0.85597 0.78603 0.79319 0.78394 1.19766 1.20869 1.19713 1.21257 0.92984 0.91317 1.51732 0.92832 1.19727 0.92898 0.91206 0.94140 0.97099 1.22431 1.00976 0.92279 0.98702 1.22257 0.90289 0.94445 0.94723 1.48841 1.33518 1.05085 1.47584 1.21084 0.84853 0.82125 0.81160 1.90623 1.35015 1.80577 1.41542 1.21192 0.99491 0.90331 1.02063 1.21991 1.05249 0.89961 0.99561 0.89425 1.23196 0.97047 1.02375 0.97750 1.21897 0.95631 0.93866 1.00579 0.86190 1.21756 0.95674 0.96278 1.02198 1.23019 0.96722 1.03660 0.98419 1.23013 1.03059 0.94977 0.99255 1.22231 0.95326 0.86654 0.96357 0.92748 0.91669 0.92870 0.89234 0.90216 0.86520 0.86926 0.88992 0.87354 0.88775 0.88565 0.88322 0.87861 0.88065 0.93864 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.76 12.62 21.45 0.27 -50.48 16 2 C 0.02 1.10 5.37 84.65 0.45 1.55 16 3 Si 0.96 42.53 29.54 68.60 2.03 44.56 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.53 -28.83 8.50 25.60 0.22 -28.62 16 8 H 0.05 2.88 7.77 -2.91 -0.02 2.85 16 9 C 0.04 1.94 2.85 -10.15 -0.03 1.91 16 10 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 11 C -0.11 -4.42 5.90 31.78 0.19 -4.23 16 12 C 0.10 3.35 6.49 86.73 0.56 3.91 16 13 N -0.62 -23.11 3.33 -811.77 -2.70 -25.81 16 14 C 0.52 18.38 7.85 87.66 0.69 19.07 16 15 O -0.60 -26.06 15.82 -3.04 -0.05 -26.11 16 16 C -0.09 -2.19 5.17 29.85 0.15 -2.03 16 17 C -0.15 -3.55 5.13 -10.80 -0.06 -3.60 16 18 H 0.09 2.65 7.30 -2.39 -0.02 2.63 16 19 C -0.17 -3.21 9.90 30.59 0.30 -2.91 16 20 C -0.10 -1.81 5.57 -10.80 -0.06 -1.87 16 21 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 22 C -0.14 -2.44 5.85 -10.79 -0.06 -2.51 16 23 C -0.18 -2.76 10.25 30.59 0.31 -2.45 16 24 C -0.17 -2.24 10.25 30.60 0.31 -1.93 16 25 C 0.12 5.22 6.34 86.85 0.55 5.77 16 26 H 0.26 13.91 8.31 -92.70 -0.77 13.14 16 27 H 0.06 2.91 7.85 -2.39 -0.02 2.89 16 28 H 0.05 2.27 8.03 -2.38 -0.02 2.25 16 29 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 30 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.12 2.20 7.87 -2.39 -0.02 2.18 16 32 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.11 1.77 8.03 -2.39 -0.02 1.75 16 35 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.04 2.03 8.04 -2.38 -0.02 2.01 16 41 H 0.05 2.38 8.02 -2.39 -0.02 2.36 16 Total: -1.00 -64.03 338.83 4.07 -59.96 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.98 Total: 15.80 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: 3.54 Total: -17.92 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: -2.43 Total: -76.30 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.05 Total: -26.11 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -64.03 4.07 -59.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712948164.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.074 kcal (2) G-P(sol) polarization free energy of solvation -64.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds