Wall clock time and date at job start Mon Mar 30 2020 06:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00262 * 2 1 4 4 H 1.48494 * 109.47249 * 240.00327 * 3 2 1 5 5 H 1.48500 * 109.46797 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46929 * 120.00061 * 3 2 1 7 7 C 1.37877 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00344 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00122 * 359.97438 * 7 2 1 10 10 H 1.08999 * 110.78190 * 298.21702 * 9 7 2 11 11 C 1.55162 * 110.71926 * 61.45377 * 9 7 2 12 12 C 1.54910 * 101.57983 * 153.86318 * 11 9 7 13 13 N 1.47426 * 104.83518 * 322.99204 * 12 11 9 14 14 C 1.34768 * 125.64583 * 204.08888 * 13 12 11 15 15 O 1.21288 * 119.99476 * 180.02562 * 14 13 12 16 16 C 1.50697 * 120.00434 * 0.02596 * 14 13 12 17 17 C 1.53786 * 113.61519 * 80.85965 * 16 14 13 18 18 C 1.54049 * 86.98426 * 140.01979 * 17 16 14 19 19 C 1.53002 * 113.62024 * 220.02020 * 18 17 16 20 20 C 1.52998 * 117.50020 * 226.11892 * 19 18 17 21 21 C 1.52999 * 60.00107 * 252.50914 * 20 19 18 22 22 C 1.53781 * 113.61630 * 178.46913 * 16 14 13 23 23 C 1.47026 * 108.70144 * 24.35750 * 13 12 11 24 24 H 0.96997 * 120.00044 * 359.97438 * 1 2 3 25 25 H 1.09000 * 110.99925 * 35.79463 * 11 9 7 26 26 H 1.08996 * 111.03639 * 271.95815 * 11 9 7 27 27 H 1.08993 * 110.36558 * 204.15164 * 12 11 9 28 28 H 1.08999 * 110.45576 * 81.87905 * 12 11 9 29 29 H 1.09002 * 112.84782 * 309.66555 * 16 14 13 30 30 H 1.08992 * 113.61675 * 254.61723 * 17 16 14 31 31 H 1.09000 * 113.60973 * 25.52011 * 17 16 14 32 32 H 1.08996 * 113.68970 * 89.12734 * 18 17 16 33 33 H 1.08997 * 115.54629 * 11.83134 * 19 18 17 34 34 H 1.09000 * 117.49722 * 0.02562 * 20 19 18 35 35 H 1.09001 * 117.50001 * 145.02125 * 20 19 18 36 36 H 1.08996 * 117.50324 * 252.50677 * 21 20 19 37 37 H 1.09003 * 117.49569 * 107.48374 * 21 20 19 38 38 H 1.08999 * 113.61567 * 334.48200 * 22 16 14 39 39 H 1.09000 * 113.61379 * 105.30323 * 22 16 14 40 40 H 1.08990 * 109.88415 * 118.13084 * 23 13 12 41 41 H 1.08999 * 109.87729 * 239.29498 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6406 -2.5934 0.8976 11 6 0.3754 -2.6276 -1.2751 12 6 0.2708 -4.1657 -1.4269 13 7 1.5922 -4.6760 -1.0183 14 6 2.1319 -5.8511 -1.3977 15 8 3.2314 -6.1707 -0.9976 16 6 1.3694 -6.7682 -2.3189 17 6 1.4699 -6.3742 -3.8020 18 6 1.5820 -7.8793 -4.1102 19 6 2.5979 -8.2066 -5.2065 20 6 2.1668 -9.1868 -6.2994 21 6 3.1751 -9.6233 -5.2347 22 6 2.1364 -8.0495 -2.6859 23 6 2.2208 -3.6935 -0.1232 24 1 -0.4850 0.8400 0.0004 25 1 0.8727 -2.1828 -2.1370 26 1 -0.6075 -2.1824 -1.1210 27 1 0.0657 -4.4314 -2.4639 28 1 -0.5071 -4.5609 -0.7737 29 1 0.3484 -6.9512 -1.9840 30 1 0.5633 -5.9131 -4.1937 31 1 2.3711 -5.8107 -4.0439 32 1 0.6199 -8.3674 -4.2655 33 1 3.2577 -7.3885 -5.4954 34 1 1.1593 -9.5981 -6.2376 35 1 2.5428 -9.0135 -7.3077 36 1 4.2145 -9.7373 -5.5425 37 1 2.8311 -10.3221 -4.4722 38 1 3.2194 -7.9433 -2.6234 39 1 1.7682 -8.9399 -2.1762 40 1 2.3888 -4.1393 0.8571 41 1 3.1672 -3.3581 -0.5472 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714445304.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:59 Heat of formation + Delta-G solvation = -17.765727 kcal Electronic energy + Delta-G solvation = -19855.515520 eV Core-core repulsion = 16928.497513 eV Total energy + Delta-G solvation = -2927.018008 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.50018 -39.68444 -38.24891 -36.60037 -34.96213 -32.16676 -30.12918 -28.27322 -26.79753 -26.30945 -24.14285 -23.12395 -22.47840 -21.45615 -20.42870 -19.78524 -18.64246 -18.03130 -16.98645 -16.63623 -16.52213 -16.29315 -15.93754 -14.99946 -14.89808 -14.47580 -14.24002 -13.67628 -13.44631 -13.39963 -13.09568 -13.06434 -12.90077 -12.76483 -12.69229 -12.40533 -12.31165 -12.19672 -11.60932 -11.59942 -11.47207 -11.36413 -11.03267 -10.96776 -10.65333 -10.53270 -10.49985 -9.56644 -8.16819 -6.26415 1.43023 1.43249 1.51144 1.63346 2.12882 2.43322 2.91550 3.14678 3.45125 3.65978 3.68603 3.79841 4.00128 4.09289 4.16535 4.19442 4.31255 4.38528 4.45002 4.47706 4.60387 4.69262 4.79123 4.80461 4.83703 4.86116 4.90690 5.04638 5.10049 5.12876 5.19723 5.27579 5.32631 5.33894 5.37094 5.58315 5.62152 5.77876 5.86603 6.27090 6.68797 6.78658 7.19814 7.40965 8.91813 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.036473 B = 0.003804 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.500809 B = 7358.284547 C = 7451.570816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.024 3.976 3 Si 0.953 3.047 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.540 4.540 8 H 0.048 0.952 9 C 0.039 3.961 10 H 0.017 0.983 11 C -0.098 4.098 12 C 0.104 3.896 13 N -0.613 5.613 14 C 0.523 3.477 15 O -0.598 6.598 16 C -0.131 4.131 17 C -0.112 4.112 18 C -0.062 4.062 19 C -0.157 4.157 20 C -0.169 4.169 21 C -0.182 4.182 22 C -0.109 4.109 23 C 0.119 3.881 24 H 0.264 0.736 25 H 0.043 0.957 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.136 0.864 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.041 0.959 41 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.307 -15.999 -11.294 19.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.177 4.177 3 Si 0.779 3.221 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.200 1.200 7 C -0.578 4.578 8 H 0.066 0.934 9 C 0.020 3.980 10 H 0.035 0.965 11 C -0.137 4.137 12 C -0.018 4.018 13 N -0.344 5.344 14 C 0.314 3.686 15 O -0.480 6.480 16 C -0.152 4.152 17 C -0.150 4.150 18 C -0.080 4.080 19 C -0.175 4.175 20 C -0.206 4.206 21 C -0.219 4.219 22 C -0.147 4.147 23 C -0.004 4.004 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.090 0.910 27 H 0.115 0.885 28 H 0.096 0.904 29 H 0.154 0.846 30 H 0.114 0.886 31 H 0.084 0.916 32 H 0.134 0.866 33 H 0.110 0.890 34 H 0.124 0.876 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.060 0.940 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.870 -16.107 -11.103 19.652 hybrid contribution 0.779 1.377 0.542 1.672 sum -1.091 -14.731 -10.561 18.158 Atomic orbital electron populations 1.70014 1.06818 1.27624 1.50266 1.25613 0.95744 1.01955 0.94354 0.85692 0.78505 0.79259 0.78683 1.19897 1.20461 1.20011 1.21285 0.92756 0.91588 1.52165 0.93385 1.19625 0.92776 0.90923 0.94696 0.96502 1.22488 1.00719 0.92371 0.98087 1.22563 0.83415 0.94713 1.01116 1.48829 1.19994 1.18329 1.47294 1.21067 0.85907 0.80758 0.80893 1.90616 1.23092 1.75367 1.58966 1.22850 1.01330 0.96138 0.94862 1.22960 1.03024 0.97370 0.91646 1.22082 0.98666 0.95146 0.92084 1.22249 1.01896 0.93659 0.99699 1.23084 1.00257 1.02680 0.94598 1.22970 0.99098 0.97241 1.02602 1.22828 0.99891 0.95680 0.96266 1.21980 0.97019 0.89463 0.91926 0.92666 0.93833 0.90955 0.88476 0.90422 0.84582 0.88557 0.91616 0.86568 0.88952 0.87623 0.88484 0.88977 0.88370 0.91313 0.89845 0.94043 0.94298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.99 12.11 21.45 0.26 -49.73 16 2 C 0.02 1.27 5.33 84.65 0.45 1.72 16 3 Si 0.95 42.85 29.54 68.60 2.03 44.88 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.54 -29.54 8.50 25.60 0.22 -29.32 16 8 H 0.05 2.65 7.58 -2.91 -0.02 2.63 16 9 C 0.04 1.91 2.86 -10.34 -0.03 1.88 16 10 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 11 C -0.10 -4.22 5.75 31.99 0.18 -4.03 16 12 C 0.10 3.42 6.68 86.86 0.58 4.00 16 13 N -0.61 -23.52 3.33 -811.79 -2.70 -26.22 16 14 C 0.52 19.09 7.37 87.66 0.65 19.74 16 15 O -0.60 -26.72 16.24 -3.05 -0.05 -26.77 16 16 C -0.13 -3.23 3.15 -11.01 -0.03 -3.26 16 17 C -0.11 -2.37 6.69 31.21 0.21 -2.16 16 18 C -0.06 -1.07 3.89 -10.18 -0.04 -1.11 16 19 C -0.16 -2.75 5.55 -10.79 -0.06 -2.81 16 20 C -0.17 -2.32 10.22 30.59 0.31 -2.01 16 21 C -0.18 -2.86 10.05 30.59 0.31 -2.55 16 22 C -0.11 -2.45 6.77 31.12 0.21 -2.24 16 23 C 0.12 5.43 6.46 86.73 0.56 5.99 16 24 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 25 H 0.04 1.97 8.04 -2.39 -0.02 1.96 16 26 H 0.07 3.27 7.54 -2.39 -0.02 3.25 16 27 H 0.10 2.54 7.04 -2.39 -0.02 2.52 16 28 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.14 2.65 8.12 -2.39 -0.02 2.63 16 30 H 0.10 1.65 7.96 -2.39 -0.02 1.63 16 31 H 0.07 1.68 7.94 -2.39 -0.02 1.66 16 32 H 0.12 1.52 8.07 -2.39 -0.02 1.50 16 33 H 0.09 1.83 7.97 -2.39 -0.02 1.81 16 34 H 0.11 1.20 8.13 -2.39 -0.02 1.18 16 35 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.07 1.95 7.41 -2.39 -0.02 1.93 16 39 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.04 1.90 7.66 -2.39 -0.02 1.89 16 Total: -1.00 -64.14 330.57 4.04 -60.11 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.99 Total: 13.92 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: 3.52 Total: -16.18 kcal Atomic # 7 Polarization: -73.51 SS G_CDS: -2.44 Total: -75.95 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.05 Total: -26.77 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -64.14 4.04 -60.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714445304.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.340 kcal (2) G-P(sol) polarization free energy of solvation -64.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds