Wall clock time and date at job start Mon Mar 30 2020 06:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86792 * 119.99793 * 2 1 4 4 H 1.48500 * 109.47339 * 240.00129 * 3 2 1 5 5 H 1.48498 * 109.47643 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46979 * 119.99982 * 3 2 1 7 7 C 1.37878 * 119.99880 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99812 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00366 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47508 * 180.02562 * 9 7 2 11 11 C 1.34779 * 119.99464 * 270.00051 * 10 9 7 12 12 O 1.21282 * 120.00553 * 5.06971 * 11 10 9 13 13 C 1.50699 * 119.99646 * 185.07145 * 11 10 9 14 14 C 1.53000 * 109.46910 * 184.62200 * 13 11 10 15 15 H 1.09002 * 110.43563 * 56.09348 * 14 13 11 16 16 C 1.54891 * 110.48751 * 293.54602 * 14 13 11 17 17 C 1.54892 * 102.74626 * 203.37746 * 16 14 13 18 18 C 1.54265 * 104.19589 * 37.94557 * 17 16 14 19 19 H 1.09007 * 117.41173 * 116.36515 * 18 17 16 20 20 C 1.52995 * 118.20022 * 272.20608 * 18 17 16 21 21 C 1.53006 * 60.37761 * 93.61940 * 20 18 17 22 22 H 1.08996 * 119.75540 * 111.12624 * 21 20 18 23 23 C 1.46496 * 120.00272 * 89.99310 * 10 9 7 24 24 C 1.53001 * 117.50057 * 294.27057 * 23 10 9 25 25 C 1.53001 * 117.49957 * 2.89546 * 23 10 9 26 26 H 0.96999 * 120.00221 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.47490 * 59.99346 * 9 7 2 28 28 H 1.09007 * 109.46748 * 299.99773 * 9 7 2 29 29 H 1.08990 * 109.47556 * 304.62364 * 13 11 10 30 30 H 1.08999 * 109.46973 * 64.62950 * 13 11 10 31 31 H 1.08995 * 110.75624 * 321.69671 * 16 14 13 32 32 H 1.09005 * 110.75120 * 85.06738 * 16 14 13 33 33 H 1.09004 * 110.47982 * 156.62208 * 17 16 14 34 34 H 1.08992 * 110.49024 * 279.13067 * 17 16 14 35 35 H 1.09003 * 117.46295 * 201.21815 * 20 18 17 36 36 H 1.09001 * 117.46084 * 346.02278 * 20 18 17 37 37 H 1.09002 * 115.55998 * 148.58273 * 23 10 9 38 38 H 1.08995 * 117.49931 * 0.02562 * 24 23 10 39 39 H 1.08998 * 117.49808 * 214.98005 * 24 23 10 40 40 H 1.08997 * 117.49670 * 145.01894 * 25 23 10 41 41 H 1.08998 * 117.51892 * 359.97438 * 25 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0018 11 6 2.6418 -4.1254 -1.1649 12 8 2.3214 -3.6073 -2.2137 13 6 3.5305 -5.3424 -1.1663 14 6 3.9760 -5.6469 -2.5980 15 1 4.4684 -4.7788 -3.0362 16 6 2.7650 -6.0773 -3.4626 17 6 3.4292 -6.8950 -4.5981 18 6 4.5653 -7.6658 -3.8945 19 1 4.5020 -8.7539 -3.8840 20 6 5.9281 -6.9832 -3.7621 21 6 4.9129 -6.8723 -2.6228 22 1 5.1058 -7.3758 -1.6755 23 6 2.6782 -4.1688 1.2710 24 6 3.5336 -3.2658 2.1619 25 6 2.0920 -3.5890 2.5599 26 1 -0.4850 0.8400 0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8904 29 1 4.4063 -5.1535 -0.5457 30 1 2.9799 -6.1947 -0.7681 31 1 2.0812 -6.7006 -2.8866 32 1 2.2489 -5.2057 -3.8653 33 1 2.7127 -7.5890 -5.0377 34 1 3.8325 -6.2300 -5.3616 35 1 6.7967 -7.6218 -3.6011 36 1 6.1053 -6.0931 -4.3659 37 1 2.9136 -5.2331 1.2594 38 1 3.7425 -2.2577 1.8038 39 1 4.3318 -3.7359 2.7364 40 1 1.9419 -4.2718 3.3962 41 1 1.3532 -2.7935 2.4638 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716835799.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:57 Heat of formation + Delta-G solvation = -8.873096 kcal Electronic energy + Delta-G solvation = -20265.171881 eV Core-core repulsion = 17338.539487 eV Total energy + Delta-G solvation = -2926.632394 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.17698 -40.00811 -38.15559 -35.22156 -33.77385 -33.51342 -31.44269 -29.51360 -26.57420 -24.70601 -23.58002 -23.29283 -22.81983 -21.27770 -20.35717 -19.61735 -18.68347 -18.06326 -17.18217 -16.64870 -16.32602 -16.10468 -15.73622 -15.22187 -14.72628 -14.54699 -14.13590 -13.83130 -13.66516 -13.53216 -13.37202 -12.91361 -12.77436 -12.67402 -12.23564 -12.17077 -12.03484 -11.95897 -11.93073 -11.62611 -11.53143 -11.44328 -11.29375 -10.93117 -10.63089 -10.47060 -10.40790 -9.21237 -8.22039 -6.35499 1.32757 1.36728 1.43807 1.84546 2.27702 2.42033 2.79774 3.06265 3.09645 3.50584 3.76469 3.84078 3.93768 4.03513 4.13105 4.24763 4.30600 4.34323 4.44527 4.54726 4.59824 4.67257 4.71865 4.84885 4.93001 4.97407 5.00001 5.04171 5.09437 5.13714 5.20712 5.26292 5.28395 5.41182 5.43456 5.49206 5.57614 5.58292 5.86888 6.07314 6.70890 6.85707 7.29562 7.54442 8.84268 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.022583 B = 0.005194 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.594231 B = 5389.588985 C = 5914.831908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.961 3.039 4 H -0.280 1.280 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.529 4.529 8 H 0.048 0.952 9 C 0.260 3.740 10 N -0.584 5.584 11 C 0.496 3.504 12 O -0.590 6.590 13 C -0.113 4.113 14 C -0.047 4.047 15 H 0.048 0.952 16 C -0.116 4.116 17 C -0.097 4.097 18 C -0.163 4.163 19 H 0.128 0.872 20 C -0.152 4.152 21 C -0.160 4.160 22 H 0.133 0.867 23 C 0.061 3.939 24 C -0.186 4.186 25 C -0.181 4.181 26 H 0.266 0.734 27 H -0.009 1.009 28 H 0.029 0.971 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.079 0.921 34 H 0.056 0.944 35 H 0.119 0.881 36 H 0.079 0.921 37 H 0.164 0.836 38 H 0.067 0.933 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.867 -17.276 0.862 20.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.190 4.190 3 Si 0.785 3.215 4 H -0.206 1.206 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.567 4.567 8 H 0.067 0.933 9 C 0.139 3.861 10 N -0.313 5.313 11 C 0.286 3.714 12 O -0.471 6.471 13 C -0.153 4.153 14 C -0.066 4.066 15 H 0.067 0.933 16 C -0.154 4.154 17 C -0.134 4.134 18 C -0.181 4.181 19 H 0.146 0.854 20 C -0.189 4.189 21 C -0.178 4.178 22 H 0.151 0.849 23 C -0.043 4.043 24 C -0.225 4.225 25 C -0.218 4.218 26 H 0.075 0.925 27 H 0.009 0.991 28 H 0.047 0.953 29 H 0.129 0.871 30 H 0.135 0.865 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.137 0.863 36 H 0.097 0.903 37 H 0.181 0.819 38 H 0.086 0.914 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.505 -16.882 0.325 19.886 hybrid contribution -0.287 1.711 -0.235 1.751 sum 10.218 -15.171 0.090 18.292 Atomic orbital electron populations 1.70038 1.07435 1.28022 1.51386 1.25789 0.95733 1.02771 0.94732 0.85574 0.78420 0.78636 0.78842 1.20618 1.20265 1.18554 1.21577 0.92838 0.91837 1.50496 0.93350 1.18735 0.88004 0.83905 0.95449 1.47769 1.44146 1.33822 1.05585 1.21461 0.81094 0.86252 0.82619 1.90628 1.59966 1.63733 1.32742 1.21699 0.99575 0.94853 0.99170 1.21243 0.95217 0.96402 0.93721 0.93318 1.22691 0.97249 0.98593 0.96871 1.21956 0.96691 0.97939 0.96831 1.23293 0.95444 0.99003 1.00372 0.85414 1.23137 0.93051 1.02315 1.00366 1.23242 1.01895 0.97891 0.94766 0.84894 1.22064 1.04006 0.97488 0.80750 1.23399 0.94663 1.00912 1.03502 1.23263 0.97110 1.03732 0.97740 0.92524 0.99086 0.95349 0.87105 0.86483 0.91394 0.93808 0.90258 0.92570 0.86251 0.90265 0.81916 0.91403 0.85004 0.84892 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.19 13.29 21.45 0.28 -56.90 16 2 C 0.01 0.50 5.46 84.65 0.46 0.96 16 3 Si 0.96 46.09 29.54 68.60 2.03 48.11 16 4 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.53 -31.00 8.70 25.60 0.22 -30.78 16 8 H 0.05 2.85 7.21 -2.91 -0.02 2.82 16 9 C 0.26 14.33 4.66 85.63 0.40 14.73 16 10 N -0.58 -25.23 2.79 -802.15 -2.23 -27.47 16 11 C 0.50 20.89 7.48 87.66 0.66 21.54 16 12 O -0.59 -31.00 14.01 -3.04 -0.04 -31.05 16 13 C -0.11 -3.14 3.71 29.85 0.11 -3.03 16 14 C -0.05 -1.31 2.29 -9.72 -0.02 -1.33 16 15 H 0.05 1.65 8.08 -2.39 -0.02 1.63 16 16 C -0.12 -3.42 5.59 31.89 0.18 -3.25 16 17 C -0.10 -2.23 6.62 31.67 0.21 -2.02 16 18 C -0.16 -3.03 6.94 -10.07 -0.07 -3.10 16 19 H 0.13 1.86 8.14 -2.38 -0.02 1.84 16 20 C -0.15 -2.72 10.07 30.59 0.31 -2.41 16 21 C -0.16 -3.16 6.36 -10.07 -0.06 -3.22 16 22 H 0.13 2.02 8.05 -2.39 -0.02 2.00 16 23 C 0.06 1.89 5.80 44.99 0.26 2.16 16 24 C -0.19 -5.63 10.28 30.60 0.31 -5.32 16 25 C -0.18 -5.60 9.74 30.60 0.30 -5.31 16 26 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 27 H -0.01 -0.57 7.50 -2.39 -0.02 -0.59 16 28 H 0.03 1.59 5.99 -2.38 -0.01 1.58 16 29 H 0.11 2.56 7.89 -2.39 -0.02 2.54 16 30 H 0.12 2.54 7.90 -2.39 -0.02 2.52 16 31 H 0.07 1.87 8.02 -2.39 -0.02 1.85 16 32 H 0.04 1.64 6.95 -2.38 -0.02 1.62 16 33 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.16 3.46 7.12 -2.39 -0.02 3.44 16 38 H 0.07 2.64 6.93 -2.39 -0.02 2.63 16 39 H 0.13 2.81 8.14 -2.39 -0.02 2.79 16 40 H 0.13 2.96 8.14 -2.39 -0.02 2.94 16 41 H 0.07 2.84 6.11 -2.39 -0.01 2.82 16 Total: -1.00 -74.86 327.67 4.30 -70.56 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 1.00 Total: 17.13 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: 3.26 Total: -20.39 kcal Atomic # 7 Polarization: -82.42 SS G_CDS: -1.95 Total: -84.37 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.04 Total: -31.05 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Total: -74.86 4.30 -70.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716835799.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.683 kcal (2) G-P(sol) polarization free energy of solvation -74.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds