Wall clock time and date at job start Mon Mar 30 2020 06:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99901 * 2 1 4 4 H 1.48503 * 109.47341 * 239.99687 * 3 2 1 5 5 H 1.48500 * 109.47341 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47246 * 119.99389 * 3 2 1 7 7 C 1.37875 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99994 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99771 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47108 * 179.97438 * 9 7 2 11 11 C 1.34783 * 119.99822 * 90.00128 * 10 9 7 12 12 O 1.21280 * 119.99797 * 185.93571 * 11 10 9 13 13 C 1.50700 * 119.99824 * 5.93230 * 11 10 9 14 14 C 1.52999 * 109.46863 * 174.94202 * 13 11 10 15 15 H 1.09004 * 110.43522 * 52.46113 * 14 13 11 16 16 C 1.54889 * 110.59855 * 289.83899 * 14 13 11 17 17 C 1.54891 * 102.74706 * 203.32307 * 16 14 13 18 18 C 1.54297 * 104.18050 * 37.91762 * 17 16 14 19 19 H 1.08992 * 117.76442 * 196.05173 * 18 17 16 20 20 C 1.52997 * 118.18032 * 40.62564 * 18 17 16 21 21 C 1.53001 * 60.34595 * 266.34080 * 20 18 17 22 22 H 1.09000 * 119.29409 * 247.76926 * 21 20 18 23 23 C 1.46498 * 120.00358 * 270.00266 * 10 9 7 24 24 C 1.53006 * 117.50030 * 196.47390 * 23 10 9 25 25 C 1.52990 * 117.50352 * 127.81456 * 23 10 9 26 26 H 0.97001 * 120.00462 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47331 * 59.99812 * 9 7 2 28 28 H 1.09002 * 109.47241 * 299.99336 * 9 7 2 29 29 H 1.08997 * 109.46753 * 54.94039 * 13 11 10 30 30 H 1.08997 * 109.47060 * 294.93834 * 13 11 10 31 31 H 1.08992 * 110.75775 * 321.64106 * 16 14 13 32 32 H 1.09000 * 110.75448 * 84.82851 * 16 14 13 33 33 H 1.09003 * 110.48364 * 156.62361 * 17 16 14 34 34 H 1.08999 * 110.48645 * 279.13169 * 17 16 14 35 35 H 1.08999 * 117.46129 * 158.75721 * 20 18 17 36 36 H 1.09005 * 117.46192 * 13.91930 * 20 18 17 37 37 H 1.09004 * 115.54719 * 342.14266 * 23 10 9 38 38 H 1.09003 * 117.49708 * 0.02562 * 24 23 10 39 39 H 1.09000 * 117.49851 * 145.01668 * 24 23 10 40 40 H 1.08998 * 117.50345 * 214.98007 * 25 23 10 41 41 H 1.09001 * 117.50078 * 359.97438 * 25 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1027 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.6410 -4.1248 1.1678 12 8 3.5085 -4.9723 1.1706 13 6 2.0526 -3.6443 2.4694 14 6 2.6277 -4.4676 3.6237 15 1 3.7170 -4.4693 3.5842 16 6 2.0814 -5.9164 3.5847 17 6 2.2422 -6.3819 5.0533 18 6 1.8929 -5.1311 5.8866 19 1 2.1863 -5.1222 6.9363 20 6 0.7182 -4.2638 5.4302 21 6 2.1375 -3.9147 4.9778 22 1 2.6052 -3.0016 5.3460 23 6 2.6792 -4.1693 -1.2681 24 6 3.3486 -5.5446 -1.2292 25 6 4.1918 -4.2889 -1.4639 26 1 -0.4851 0.8400 -0.0004 27 1 0.6247 -2.5570 -0.8897 28 1 0.6241 -2.5567 0.8904 29 1 0.9693 -3.7617 2.4436 30 1 2.3009 -2.5929 2.6141 31 1 1.0324 -5.9259 3.2892 32 1 2.6761 -6.5355 2.9130 33 1 1.5494 -7.1939 5.2741 34 1 3.2687 -6.6950 5.2440 35 1 0.2537 -3.6153 6.1731 36 1 0.0424 -4.6842 4.6854 37 1 2.0759 -3.9278 -2.1433 38 1 3.4344 -6.0353 -0.2596 39 1 3.1861 -6.2077 -2.0789 40 1 4.5838 -4.1263 -2.4679 41 1 4.8329 -3.9528 -0.6489 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716835801.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:00 Heat of formation + Delta-G solvation = 13.549940 kcal Electronic energy + Delta-G solvation = -20534.985831 eV Core-core repulsion = 17609.325773 eV Total energy + Delta-G solvation = -2925.660059 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.06067 -39.00443 -35.75748 -34.18308 -32.25728 -31.68785 -29.98820 -27.05656 -25.40635 -23.33703 -22.85762 -21.85402 -21.75599 -19.60266 -18.84915 -18.07168 -16.67583 -16.47452 -15.89276 -15.29947 -14.59972 -14.47552 -14.46194 -13.69045 -13.31144 -13.18432 -12.63120 -12.39964 -12.28588 -12.10571 -11.66273 -11.38366 -11.23348 -11.04958 -10.84910 -10.76164 -10.67601 -10.65296 -10.50780 -10.28040 -10.17685 -9.84714 -9.67765 -9.58221 -9.39582 -8.66003 -8.49785 -7.47522 -6.17743 -4.25057 3.24624 3.29328 3.30699 3.38874 3.78363 3.95296 4.33467 4.58164 4.63249 4.84177 5.06295 5.14951 5.24029 5.30292 5.38151 5.53301 5.57462 5.66089 5.69067 5.72768 5.83872 5.90583 5.92354 5.98851 6.15691 6.21873 6.24662 6.26315 6.33249 6.37682 6.47344 6.59272 6.60347 6.71915 6.83533 6.94348 7.17169 7.64387 7.77938 8.06103 8.36531 8.80633 9.06298 9.42709 10.88667 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.015084 B = 0.007002 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.838715 B = 3998.157092 C = 5355.997935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.065 3.935 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.536 4.536 8 H 0.060 0.940 9 C 0.239 3.761 10 N -0.570 5.570 11 C 0.519 3.481 12 O -0.567 6.567 13 C -0.125 4.125 14 C -0.044 4.044 15 H 0.086 0.914 16 C -0.121 4.121 17 C -0.094 4.094 18 C -0.171 4.171 19 H 0.104 0.896 20 C -0.154 4.154 21 C -0.158 4.158 22 H 0.108 0.892 23 C 0.089 3.911 24 C -0.203 4.203 25 C -0.188 4.188 26 H 0.266 0.734 27 H 0.034 0.966 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.120 0.880 38 H 0.134 0.866 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.821 -8.891 6.505 11.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.574 4.574 8 H 0.078 0.922 9 C 0.120 3.880 10 N -0.298 5.298 11 C 0.308 3.692 12 O -0.449 6.449 13 C -0.165 4.165 14 C -0.063 4.063 15 H 0.104 0.896 16 C -0.159 4.159 17 C -0.131 4.131 18 C -0.189 4.189 19 H 0.122 0.878 20 C -0.191 4.191 21 C -0.176 4.176 22 H 0.126 0.874 23 C -0.017 4.017 24 C -0.240 4.240 25 C -0.227 4.227 26 H 0.075 0.925 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.119 0.881 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.138 0.862 38 H 0.152 0.848 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.063 -9.165 6.492 11.420 hybrid contribution 0.361 1.352 -0.146 1.407 sum 2.424 -7.813 6.346 10.353 Atomic orbital electron populations 1.69907 1.05979 1.27404 1.49803 1.24926 0.94845 0.99229 0.94764 0.86576 0.79565 0.82607 0.78853 1.20136 1.21131 1.20098 1.21455 0.93602 0.90433 1.51935 0.92153 1.19451 0.87401 0.82432 0.98734 1.47693 1.44864 1.34054 1.03227 1.20580 0.81899 0.81015 0.85662 1.90413 1.32563 1.34509 1.87463 1.21602 1.01352 1.02109 0.91423 1.21329 1.00456 0.93601 0.90921 0.89593 1.22556 1.00894 0.96522 0.95919 1.21897 1.00882 0.95774 0.94552 1.23112 1.04202 0.93327 0.98291 0.87828 1.22868 0.91206 1.02138 1.02897 1.23143 0.99306 0.98751 0.96411 0.87380 1.21483 0.93911 0.97803 0.88488 1.23796 1.04129 0.91394 1.04702 1.23099 0.95147 1.02772 1.01688 0.92471 0.94763 0.94023 0.89510 0.88055 0.91927 0.90379 0.92023 0.91249 0.88652 0.88951 0.86214 0.84805 0.90398 0.89671 0.88898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.54 13.29 55.43 0.74 -23.81 16 2 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.54 -14.02 9.39 -34.44 -0.32 -14.34 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.24 5.69 5.10 -5.20 -0.03 5.66 16 10 N -0.57 -12.12 2.82 -167.47 -0.47 -12.59 16 11 C 0.52 10.50 7.24 -10.98 -0.08 10.42 16 12 O -0.57 -11.78 10.64 5.56 0.06 -11.72 16 13 C -0.13 -2.25 3.78 -27.88 -0.11 -2.35 16 14 C -0.04 -0.69 2.38 -88.96 -0.21 -0.90 16 15 H 0.09 1.43 7.82 -51.93 -0.41 1.03 16 16 C -0.12 -1.73 5.32 -24.74 -0.13 -1.86 16 17 C -0.09 -1.13 6.77 -25.06 -0.17 -1.30 16 18 C -0.17 -2.06 7.06 -89.53 -0.63 -2.69 16 19 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 20 C -0.15 -1.92 9.83 -26.73 -0.26 -2.18 16 21 C -0.16 -2.16 6.41 -89.54 -0.57 -2.73 16 22 H 0.11 1.44 8.14 -51.93 -0.42 1.01 16 23 C 0.09 1.71 6.62 -67.93 -0.45 1.26 16 24 C -0.20 -3.54 9.63 -26.69 -0.26 -3.79 16 25 C -0.19 -3.43 9.88 -26.70 -0.26 -3.69 16 26 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 27 H 0.03 0.85 8.03 -51.93 -0.42 0.44 16 28 H 0.04 1.01 6.31 -51.93 -0.33 0.68 16 29 H 0.09 1.53 7.23 -51.93 -0.38 1.15 16 30 H 0.10 1.97 8.14 -51.93 -0.42 1.54 16 31 H 0.06 0.89 7.21 -51.93 -0.37 0.52 16 32 H 0.08 1.21 7.44 -51.93 -0.39 0.82 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.09 1.18 7.21 -51.93 -0.37 0.81 16 37 H 0.12 2.18 8.09 -51.93 -0.42 1.76 16 38 H 0.13 2.58 5.23 -52.10 -0.27 2.31 16 39 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.09 1.88 7.59 -51.93 -0.39 1.48 16 LS Contribution 325.89 15.07 4.91 4.91 Total: -1.00 -27.31 325.89 -10.05 -37.36 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -6.68 Total: 7.04 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -3.58 Total: -16.87 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.26 Total: -36.39 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.06 Total: -11.72 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.31 -10.05 -37.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716835801.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.909 kcal (2) G-P(sol) polarization free energy of solvation -27.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds