Wall clock time and date at job start Mon Mar 30 2020 06:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99901 * 2 1 4 4 H 1.48503 * 109.47341 * 239.99687 * 3 2 1 5 5 H 1.48500 * 109.47341 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47246 * 119.99389 * 3 2 1 7 7 C 1.37875 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99994 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99771 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47108 * 179.97438 * 9 7 2 11 11 C 1.34783 * 119.99822 * 90.00128 * 10 9 7 12 12 O 1.21280 * 119.99797 * 185.93571 * 11 10 9 13 13 C 1.50700 * 119.99824 * 5.93230 * 11 10 9 14 14 C 1.52999 * 109.46863 * 174.94202 * 13 11 10 15 15 H 1.09004 * 110.43522 * 52.46113 * 14 13 11 16 16 C 1.54889 * 110.59855 * 289.83899 * 14 13 11 17 17 C 1.54891 * 102.74706 * 203.32307 * 16 14 13 18 18 C 1.54297 * 104.18050 * 37.91762 * 17 16 14 19 19 H 1.08992 * 117.76442 * 196.05173 * 18 17 16 20 20 C 1.52997 * 118.18032 * 40.62564 * 18 17 16 21 21 C 1.53001 * 60.34595 * 266.34080 * 20 18 17 22 22 H 1.09000 * 119.29409 * 247.76926 * 21 20 18 23 23 C 1.46498 * 120.00358 * 270.00266 * 10 9 7 24 24 C 1.53006 * 117.50030 * 196.47390 * 23 10 9 25 25 C 1.52990 * 117.50352 * 127.81456 * 23 10 9 26 26 H 0.97001 * 120.00462 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47331 * 59.99812 * 9 7 2 28 28 H 1.09002 * 109.47241 * 299.99336 * 9 7 2 29 29 H 1.08997 * 109.46753 * 54.94039 * 13 11 10 30 30 H 1.08997 * 109.47060 * 294.93834 * 13 11 10 31 31 H 1.08992 * 110.75775 * 321.64106 * 16 14 13 32 32 H 1.09000 * 110.75448 * 84.82851 * 16 14 13 33 33 H 1.09003 * 110.48364 * 156.62361 * 17 16 14 34 34 H 1.08999 * 110.48645 * 279.13169 * 17 16 14 35 35 H 1.08999 * 117.46129 * 158.75721 * 20 18 17 36 36 H 1.09005 * 117.46192 * 13.91930 * 20 18 17 37 37 H 1.09004 * 115.54719 * 342.14266 * 23 10 9 38 38 H 1.09003 * 117.49708 * 0.02562 * 24 23 10 39 39 H 1.09000 * 117.49851 * 145.01668 * 24 23 10 40 40 H 1.08998 * 117.50345 * 214.98007 * 25 23 10 41 41 H 1.09001 * 117.50078 * 359.97438 * 25 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1027 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.6410 -4.1248 1.1678 12 8 3.5085 -4.9723 1.1706 13 6 2.0526 -3.6443 2.4694 14 6 2.6277 -4.4676 3.6237 15 1 3.7170 -4.4693 3.5842 16 6 2.0814 -5.9164 3.5847 17 6 2.2422 -6.3819 5.0533 18 6 1.8929 -5.1311 5.8866 19 1 2.1863 -5.1222 6.9363 20 6 0.7182 -4.2638 5.4302 21 6 2.1375 -3.9147 4.9778 22 1 2.6052 -3.0016 5.3460 23 6 2.6792 -4.1693 -1.2681 24 6 3.3486 -5.5446 -1.2292 25 6 4.1918 -4.2889 -1.4639 26 1 -0.4851 0.8400 -0.0004 27 1 0.6247 -2.5570 -0.8897 28 1 0.6241 -2.5567 0.8904 29 1 0.9693 -3.7617 2.4436 30 1 2.3009 -2.5929 2.6141 31 1 1.0324 -5.9259 3.2892 32 1 2.6761 -6.5355 2.9130 33 1 1.5494 -7.1939 5.2741 34 1 3.2687 -6.6950 5.2440 35 1 0.2537 -3.6153 6.1731 36 1 0.0424 -4.6842 4.6854 37 1 2.0759 -3.9278 -2.1433 38 1 3.4344 -6.0353 -0.2596 39 1 3.1861 -6.2077 -2.0789 40 1 4.5838 -4.1263 -2.4679 41 1 4.8329 -3.9528 -0.6489 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716835801.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:00 Heat of formation + Delta-G solvation = 1.671839 kcal Electronic energy + Delta-G solvation = -20535.500904 eV Core-core repulsion = 17609.325773 eV Total energy + Delta-G solvation = -2926.175132 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.47596 -40.29763 -37.31185 -35.97651 -34.14408 -32.99473 -31.13878 -29.00852 -26.73567 -24.81142 -24.40571 -23.32805 -23.21529 -20.64116 -20.10977 -19.58117 -18.64975 -17.90827 -17.34074 -16.85982 -16.33533 -16.14135 -15.72676 -15.09118 -14.64163 -14.44284 -14.32564 -13.92553 -13.80071 -13.48584 -13.36078 -13.00309 -12.80360 -12.57555 -12.41606 -12.22405 -12.15752 -12.04705 -11.84682 -11.75279 -11.49852 -11.45725 -11.19261 -10.88653 -10.64782 -10.47627 -10.14432 -9.17773 -8.20754 -6.36083 1.40895 1.41238 1.49254 1.73579 2.24598 2.42256 2.85012 3.07502 3.11827 3.50170 3.74694 3.75876 4.01858 4.05477 4.18112 4.21538 4.24668 4.33155 4.45107 4.51792 4.58432 4.68235 4.75073 4.82723 4.84850 4.92092 4.94407 5.04569 5.08950 5.10729 5.16208 5.19766 5.31114 5.38246 5.40367 5.43959 5.49364 5.66879 5.98348 6.05262 6.57124 6.81621 7.31725 7.43669 8.83685 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.015084 B = 0.007002 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.838715 B = 3998.157092 C = 5355.997935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.024 3.976 3 Si 0.954 3.046 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.273 1.273 7 C -0.546 4.546 8 H 0.047 0.953 9 C 0.255 3.745 10 N -0.578 5.578 11 C 0.512 3.488 12 O -0.572 6.572 13 C -0.117 4.117 14 C -0.041 4.041 15 H 0.069 0.931 16 C -0.119 4.119 17 C -0.090 4.090 18 C -0.153 4.153 19 H 0.125 0.875 20 C -0.153 4.153 21 C -0.179 4.179 22 H 0.109 0.891 23 C 0.061 3.939 24 C -0.181 4.181 25 C -0.186 4.186 26 H 0.269 0.731 27 H 0.020 0.980 28 H 0.034 0.966 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.129 0.871 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.055 -9.319 7.146 11.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.177 4.177 3 Si 0.780 3.220 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.198 1.198 7 C -0.585 4.585 8 H 0.065 0.935 9 C 0.134 3.866 10 N -0.306 5.306 11 C 0.303 3.697 12 O -0.455 6.455 13 C -0.157 4.157 14 C -0.060 4.060 15 H 0.088 0.912 16 C -0.156 4.156 17 C -0.127 4.127 18 C -0.171 4.171 19 H 0.143 0.857 20 C -0.189 4.189 21 C -0.197 4.197 22 H 0.127 0.873 23 C -0.044 4.044 24 C -0.219 4.219 25 C -0.224 4.224 26 H 0.078 0.922 27 H 0.038 0.962 28 H 0.052 0.948 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.129 0.871 36 H 0.105 0.895 37 H 0.147 0.853 38 H 0.134 0.866 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.310 -9.611 7.133 12.190 hybrid contribution 0.303 1.442 -0.382 1.523 sum 2.613 -8.169 6.751 10.915 Atomic orbital electron populations 1.69988 1.07101 1.28300 1.50368 1.25608 0.95583 1.02147 0.94331 0.85666 0.78495 0.79069 0.78816 1.19887 1.20327 1.19783 1.21604 0.93059 0.91765 1.52024 0.93462 1.19086 0.87381 0.82598 0.97529 1.47673 1.44751 1.33699 1.04452 1.20959 0.81830 0.80857 0.86087 1.90414 1.32728 1.34711 1.87660 1.21559 1.01336 1.01353 0.91450 1.21245 0.99368 0.94301 0.91046 0.91230 1.22488 1.00275 0.95355 0.97513 1.21903 1.01867 0.96363 0.92576 1.23225 1.02960 0.92029 0.98920 0.85691 1.22961 0.90615 1.02371 1.02999 1.23096 1.00855 0.99956 0.95790 0.87279 1.21785 0.94868 0.99646 0.88091 1.23738 1.02282 0.90807 1.05053 1.23103 0.93939 1.03171 1.02221 0.92218 0.96206 0.94777 0.89474 0.89928 0.92093 0.91943 0.90274 0.90544 0.87066 0.89542 0.85334 0.86591 0.87130 0.87025 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.73 13.29 21.45 0.28 -50.44 16 2 C 0.02 1.27 5.46 84.65 0.46 1.73 16 3 Si 0.95 42.29 29.54 68.60 2.03 44.32 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.55 -29.04 9.39 25.60 0.24 -28.80 16 8 H 0.05 2.59 7.81 -2.91 -0.02 2.57 16 9 C 0.25 12.42 5.10 85.63 0.44 12.85 16 10 N -0.58 -25.04 2.82 -802.14 -2.26 -27.30 16 11 C 0.51 21.27 7.24 87.66 0.63 21.90 16 12 O -0.57 -24.24 10.64 -3.03 -0.03 -24.27 16 13 C -0.12 -4.35 3.78 29.85 0.11 -4.23 16 14 C -0.04 -1.27 2.38 -9.72 -0.02 -1.30 16 15 H 0.07 2.38 7.82 -2.38 -0.02 2.36 16 16 C -0.12 -3.34 5.32 31.89 0.17 -3.17 16 17 C -0.09 -1.99 6.77 31.68 0.21 -1.77 16 18 C -0.15 -3.32 7.06 -10.09 -0.07 -3.40 16 19 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 20 C -0.15 -3.54 9.83 30.59 0.30 -3.24 16 21 C -0.18 -4.74 6.41 -10.10 -0.06 -4.81 16 22 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 23 C 0.06 2.34 6.62 44.99 0.30 2.64 16 24 C -0.18 -6.11 9.63 30.62 0.29 -5.81 16 25 C -0.19 -6.62 9.88 30.61 0.30 -6.32 16 26 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 27 H 0.02 1.02 8.03 -2.39 -0.02 1.00 16 28 H 0.03 1.70 6.31 -2.39 -0.02 1.69 16 29 H 0.09 3.18 7.23 -2.39 -0.02 3.16 16 30 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 31 H 0.06 1.71 7.21 -2.39 -0.02 1.70 16 32 H 0.06 1.94 7.44 -2.39 -0.02 1.92 16 33 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.09 2.11 7.21 -2.38 -0.02 2.09 16 37 H 0.13 4.63 8.09 -2.38 -0.02 4.61 16 38 H 0.12 4.41 5.23 -5.05 -0.03 4.38 16 39 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 40 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 41 H 0.07 2.77 7.59 -2.39 -0.02 2.75 16 Total: -1.00 -57.90 325.89 4.31 -53.60 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.99 Total: 27.83 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: 3.31 Total: -23.73 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: -1.98 Total: -77.75 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.03 Total: -24.27 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -57.90 4.31 -53.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716835801.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.269 kcal (2) G-P(sol) polarization free energy of solvation -57.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds