Wall clock time and date at job start Mon Mar 30 2020 06:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47015 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47202 * 299.99415 * 3 2 1 6 6 H 1.48492 * 109.47553 * 59.99879 * 3 2 1 7 7 C 1.37874 * 119.99706 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00168 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99876 * 0.02562 * 7 2 1 10 10 H 1.08996 * 110.77941 * 61.79044 * 9 7 2 11 11 C 1.55157 * 110.72100 * 298.54277 * 9 7 2 12 12 C 1.54901 * 101.58260 * 206.13712 * 11 9 7 13 13 N 1.47426 * 104.83400 * 37.01041 * 12 11 9 14 14 C 1.34773 * 125.64953 * 155.90492 * 13 12 11 15 15 O 1.21287 * 120.00177 * 179.97438 * 14 13 12 16 16 C 1.50706 * 120.00009 * 359.97438 * 14 13 12 17 17 C 1.53007 * 109.47151 * 179.97438 * 16 14 13 18 18 H 1.09001 * 110.43274 * 52.45839 * 17 16 14 19 19 C 1.54892 * 110.48516 * 289.77804 * 17 16 14 20 20 C 1.54888 * 102.74300 * 203.37902 * 19 17 16 21 21 C 1.54263 * 104.19928 * 37.94084 * 20 19 17 22 22 H 1.09004 * 117.76238 * 116.74700 * 21 20 19 23 23 C 1.52997 * 118.19753 * 272.21168 * 21 20 19 24 24 C 1.52999 * 60.37867 * 93.61890 * 23 21 20 25 25 H 1.08995 * 119.75694 * 111.12570 * 24 23 21 26 26 C 1.47019 * 108.70376 * 335.87327 * 13 12 11 27 27 H 0.97002 * 119.99529 * 0.02562 * 1 2 3 28 28 H 1.09002 * 111.00633 * 324.21609 * 11 9 7 29 29 H 1.09002 * 110.99939 * 88.02388 * 11 9 7 30 30 H 1.09004 * 110.36831 * 155.84850 * 12 11 9 31 31 H 1.08999 * 110.37045 * 278.17261 * 12 11 9 32 32 H 1.08989 * 109.47089 * 299.99628 * 16 14 13 33 33 H 1.09000 * 109.46909 * 60.00079 * 16 14 13 34 34 H 1.08999 * 110.75455 * 321.68842 * 19 17 16 35 35 H 1.08995 * 110.75866 * 85.06195 * 19 17 16 36 36 H 1.09001 * 110.48611 * 279.25853 * 20 19 17 37 37 H 1.09008 * 110.59808 * 156.67562 * 20 19 17 38 38 H 1.08993 * 117.46206 * 346.00943 * 23 21 20 39 39 H 1.09003 * 117.45714 * 201.21507 * 23 21 20 40 40 H 1.09000 * 109.88042 * 241.64152 * 26 13 12 41 41 H 1.08996 * 109.88551 * 120.47294 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6407 -2.5934 -0.8977 11 6 0.3754 -2.6275 1.2750 12 6 0.2707 -4.1655 1.4269 13 7 1.5921 -4.6759 1.0182 14 6 2.1319 -5.8511 1.3977 15 8 3.2314 -6.1707 0.9977 16 6 1.3694 -6.7680 2.3190 17 6 2.1997 -8.0243 2.5901 18 1 3.1982 -7.7538 2.9334 19 6 2.2807 -8.9054 1.3188 20 6 2.5789 -10.3114 1.8959 21 6 1.7377 -10.3766 3.1873 22 1 0.9457 -11.1237 3.2402 23 6 2.3603 -9.8526 4.4829 24 6 1.4965 -8.9225 3.6287 25 1 0.5244 -8.5961 3.9982 26 6 2.2231 -3.6910 0.1276 27 1 -0.4849 0.8401 -0.0004 28 1 0.8726 -2.1827 2.1371 29 1 -0.6073 -2.1818 1.1205 30 1 0.0656 -4.4313 2.4639 31 1 -0.5069 -4.5594 0.7725 32 1 1.1697 -6.2543 3.2593 33 1 0.4260 -7.0503 1.8516 34 1 1.3306 -8.9007 0.7844 35 1 3.0915 -8.5740 0.6701 36 1 3.6396 -10.4122 2.1260 37 1 2.2658 -11.0872 1.1970 38 1 3.4358 -9.6759 4.4882 39 1 1.9383 -10.2080 5.4230 40 1 2.3956 -4.1348 -0.8529 41 1 3.1673 -3.3551 0.5561 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716920587.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:52 Heat of formation + Delta-G solvation = -27.099275 kcal Electronic energy + Delta-G solvation = -19871.375683 eV Core-core repulsion = 16943.952942 eV Total energy + Delta-G solvation = -2927.422741 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.05390 -38.91252 -36.69718 -33.07019 -32.59548 -30.76831 -29.93973 -28.38908 -25.97008 -24.31722 -22.80532 -22.08025 -20.46047 -19.79342 -19.45265 -18.57378 -16.80635 -16.34370 -15.97670 -15.39247 -14.95687 -14.60728 -14.38559 -13.84013 -13.23434 -12.94142 -12.84206 -12.61691 -12.56154 -12.21825 -11.76725 -11.32701 -11.24593 -11.21769 -11.13212 -11.00934 -10.82489 -10.72447 -10.59972 -10.47808 -10.20591 -9.80086 -9.69778 -9.49662 -9.22558 -8.96914 -8.50192 -7.95177 -6.11946 -4.15088 3.12046 3.25671 3.34170 3.38665 3.52652 3.60003 4.37369 4.41194 4.61393 4.68330 4.96754 5.06878 5.17332 5.22081 5.27930 5.43110 5.45446 5.53335 5.59585 5.62658 5.68796 5.84217 5.87970 5.92344 5.93856 6.01268 6.10288 6.16979 6.25825 6.31953 6.34034 6.47851 6.66299 6.86083 7.02035 7.12868 7.47629 7.69770 7.87502 8.18844 8.27700 8.69234 8.86694 9.49933 10.97721 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.049119 B = 0.003646 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.902798 B = 7678.312382 C = 7835.247435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.060 0.940 9 C 0.043 3.957 10 H 0.039 0.961 11 C -0.107 4.107 12 C 0.091 3.909 13 N -0.612 5.612 14 C 0.519 3.481 15 O -0.556 6.556 16 C -0.127 4.127 17 C -0.045 4.045 18 H 0.083 0.917 19 C -0.115 4.115 20 C -0.096 4.096 21 C -0.169 4.169 22 H 0.106 0.894 23 C -0.155 4.155 24 C -0.161 4.161 25 H 0.110 0.890 26 C 0.111 3.889 27 H 0.261 0.739 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.047 0.953 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.943 -16.442 6.796 17.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.553 4.553 8 H 0.078 0.922 9 C 0.024 3.976 10 H 0.057 0.943 11 C -0.146 4.146 12 C -0.032 4.032 13 N -0.344 5.344 14 C 0.308 3.692 15 O -0.435 6.435 16 C -0.167 4.167 17 C -0.064 4.064 18 H 0.101 0.899 19 C -0.152 4.152 20 C -0.134 4.134 21 C -0.187 4.187 22 H 0.124 0.876 23 C -0.192 4.192 24 C -0.180 4.180 25 H 0.128 0.872 26 C -0.011 4.011 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.066 0.934 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.490 -16.548 6.584 17.816 hybrid contribution 0.158 1.010 0.102 1.028 sum -0.332 -15.537 6.685 16.918 Atomic orbital electron populations 1.69954 1.05889 1.26621 1.50230 1.24953 0.94901 0.99156 0.94769 0.86500 0.80224 0.83514 0.77596 1.19693 1.20968 1.20993 1.21081 0.92981 0.89883 1.51307 0.92220 1.19728 0.92384 0.91215 0.94301 0.94322 1.22731 1.02423 0.89145 1.00301 1.22571 0.84124 0.98176 0.98331 1.48774 1.19368 1.18258 1.48028 1.20236 0.86307 0.80981 0.81706 1.90636 1.20949 1.74344 1.57578 1.21649 0.99626 0.95550 0.99857 1.21316 0.98724 0.92419 0.93961 0.89895 1.22733 1.02203 0.93135 0.97150 1.21959 0.99161 0.97558 0.94675 1.23261 1.02993 0.97804 0.94637 0.87583 1.23044 0.99446 1.02465 0.94250 1.23303 1.00905 0.92050 1.01698 0.87243 1.22316 0.98057 0.89069 0.91640 0.92957 0.92249 0.89765 0.92227 0.92360 0.89192 0.89279 0.91775 0.90141 0.91581 0.91496 0.89018 0.88665 0.93449 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.24 12.11 55.43 0.67 -23.57 16 2 C 0.06 1.71 5.33 -17.82 -0.10 1.62 16 3 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -13.66 8.50 -34.44 -0.29 -13.95 16 8 H 0.06 1.59 7.57 -52.49 -0.40 1.20 16 9 C 0.04 1.02 2.88 -89.93 -0.26 0.76 16 10 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 11 C -0.11 -2.30 5.75 -24.59 -0.14 -2.45 16 12 C 0.09 1.57 6.69 -2.53 -0.02 1.55 16 13 N -0.61 -11.74 3.33 -170.52 -0.57 -12.31 16 14 C 0.52 9.37 7.66 -10.98 -0.08 9.29 16 15 O -0.56 -11.66 15.06 5.55 0.08 -11.58 16 16 C -0.13 -1.69 4.18 -27.88 -0.12 -1.81 16 17 C -0.05 -0.57 2.24 -88.96 -0.20 -0.77 16 18 H 0.08 1.18 7.90 -51.93 -0.41 0.77 16 19 C -0.11 -1.43 5.75 -24.74 -0.14 -1.57 16 20 C -0.10 -0.99 6.62 -25.07 -0.17 -1.16 16 21 C -0.17 -1.63 6.94 -89.51 -0.62 -2.25 16 22 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 23 C -0.16 -1.44 10.07 -26.73 -0.27 -1.71 16 24 C -0.16 -1.67 6.36 -89.50 -0.57 -2.24 16 25 H 0.11 1.03 8.05 -51.93 -0.42 0.61 16 26 C 0.11 2.43 6.45 -3.06 -0.02 2.41 16 27 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 28 H 0.06 1.34 8.04 -51.93 -0.42 0.92 16 29 H 0.08 1.90 7.54 -51.93 -0.39 1.51 16 30 H 0.06 0.87 7.48 -51.93 -0.39 0.48 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.09 1.09 7.85 -51.94 -0.41 0.68 16 33 H 0.09 1.06 8.02 -51.93 -0.42 0.64 16 34 H 0.06 0.77 7.96 -51.93 -0.41 0.36 16 35 H 0.08 1.17 7.29 -51.93 -0.38 0.79 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 38 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.06 1.40 7.66 -51.93 -0.40 1.00 16 LS Contribution 325.58 15.07 4.91 4.91 Total: -1.00 -28.61 325.58 -9.87 -38.48 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -6.95 Total: 0.60 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -2.99 Total: -12.26 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.10 Total: -35.87 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.08 Total: -11.58 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.61 -9.87 -38.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716920587.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.379 kcal (2) G-P(sol) polarization free energy of solvation -28.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds