Wall clock time and date at job start Mon Mar 30 2020 06:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47015 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47202 * 299.99415 * 3 2 1 6 6 H 1.48492 * 109.47553 * 59.99879 * 3 2 1 7 7 C 1.37874 * 119.99706 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00168 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99876 * 0.02562 * 7 2 1 10 10 H 1.08996 * 110.77941 * 61.79044 * 9 7 2 11 11 C 1.55157 * 110.72100 * 298.54277 * 9 7 2 12 12 C 1.54901 * 101.58260 * 206.13712 * 11 9 7 13 13 N 1.47426 * 104.83400 * 37.01041 * 12 11 9 14 14 C 1.34773 * 125.64953 * 155.90492 * 13 12 11 15 15 O 1.21287 * 120.00177 * 179.97438 * 14 13 12 16 16 C 1.50706 * 120.00009 * 359.97438 * 14 13 12 17 17 C 1.53007 * 109.47151 * 179.97438 * 16 14 13 18 18 H 1.09001 * 110.43274 * 52.45839 * 17 16 14 19 19 C 1.54892 * 110.48516 * 289.77804 * 17 16 14 20 20 C 1.54888 * 102.74300 * 203.37902 * 19 17 16 21 21 C 1.54263 * 104.19928 * 37.94084 * 20 19 17 22 22 H 1.09004 * 117.76238 * 116.74700 * 21 20 19 23 23 C 1.52997 * 118.19753 * 272.21168 * 21 20 19 24 24 C 1.52999 * 60.37867 * 93.61890 * 23 21 20 25 25 H 1.08995 * 119.75694 * 111.12570 * 24 23 21 26 26 C 1.47019 * 108.70376 * 335.87327 * 13 12 11 27 27 H 0.97002 * 119.99529 * 0.02562 * 1 2 3 28 28 H 1.09002 * 111.00633 * 324.21609 * 11 9 7 29 29 H 1.09002 * 110.99939 * 88.02388 * 11 9 7 30 30 H 1.09004 * 110.36831 * 155.84850 * 12 11 9 31 31 H 1.08999 * 110.37045 * 278.17261 * 12 11 9 32 32 H 1.08989 * 109.47089 * 299.99628 * 16 14 13 33 33 H 1.09000 * 109.46909 * 60.00079 * 16 14 13 34 34 H 1.08999 * 110.75455 * 321.68842 * 19 17 16 35 35 H 1.08995 * 110.75866 * 85.06195 * 19 17 16 36 36 H 1.09001 * 110.48611 * 279.25853 * 20 19 17 37 37 H 1.09008 * 110.59808 * 156.67562 * 20 19 17 38 38 H 1.08993 * 117.46206 * 346.00943 * 23 21 20 39 39 H 1.09003 * 117.45714 * 201.21507 * 23 21 20 40 40 H 1.09000 * 109.88042 * 241.64152 * 26 13 12 41 41 H 1.08996 * 109.88551 * 120.47294 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6407 -2.5934 -0.8977 11 6 0.3754 -2.6275 1.2750 12 6 0.2707 -4.1655 1.4269 13 7 1.5921 -4.6759 1.0182 14 6 2.1319 -5.8511 1.3977 15 8 3.2314 -6.1707 0.9977 16 6 1.3694 -6.7680 2.3190 17 6 2.1997 -8.0243 2.5901 18 1 3.1982 -7.7538 2.9334 19 6 2.2807 -8.9054 1.3188 20 6 2.5789 -10.3114 1.8959 21 6 1.7377 -10.3766 3.1873 22 1 0.9457 -11.1237 3.2402 23 6 2.3603 -9.8526 4.4829 24 6 1.4965 -8.9225 3.6287 25 1 0.5244 -8.5961 3.9982 26 6 2.2231 -3.6910 0.1276 27 1 -0.4849 0.8401 -0.0004 28 1 0.8726 -2.1827 2.1371 29 1 -0.6073 -2.1818 1.1205 30 1 0.0656 -4.4313 2.4639 31 1 -0.5069 -4.5594 0.7725 32 1 1.1697 -6.2543 3.2593 33 1 0.4260 -7.0503 1.8516 34 1 1.3306 -8.9007 0.7844 35 1 3.0915 -8.5740 0.6701 36 1 3.6396 -10.4122 2.1260 37 1 2.2658 -11.0872 1.1970 38 1 3.4358 -9.6759 4.4882 39 1 1.9383 -10.2080 5.4230 40 1 2.3956 -4.1348 -0.8529 41 1 3.1673 -3.3551 0.5561 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716920587.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:52 Heat of formation + Delta-G solvation = -41.396376 kcal Electronic energy + Delta-G solvation = -19871.995652 eV Core-core repulsion = 16943.952942 eV Total energy + Delta-G solvation = -2928.042710 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.24062 -40.10826 -38.30942 -34.97600 -33.66743 -32.21271 -31.16857 -30.04986 -27.45604 -25.86999 -23.87364 -23.38637 -21.64237 -21.23189 -20.37474 -20.01643 -18.64929 -17.83807 -17.08420 -16.71271 -16.48744 -16.19554 -15.77038 -15.09314 -14.46442 -14.31562 -14.21850 -13.92941 -13.68621 -13.62267 -13.09074 -13.04111 -12.91903 -12.79062 -12.70112 -12.29650 -12.13790 -12.00708 -11.67562 -11.61707 -11.50327 -11.36320 -10.98571 -10.95528 -10.68488 -10.52027 -10.48676 -9.54403 -8.17039 -6.26364 1.40277 1.43374 1.54013 1.69802 2.13252 2.43372 2.77880 3.14620 3.46681 3.71555 3.81143 3.87269 4.09094 4.25192 4.27363 4.37155 4.40997 4.46744 4.47512 4.53967 4.58289 4.65095 4.68444 4.78296 4.80847 4.92303 4.98263 5.00937 5.10134 5.13402 5.23695 5.29102 5.37131 5.38680 5.40118 5.55773 5.59382 5.78548 5.87118 6.27396 6.70517 6.79435 7.23046 7.41208 8.91908 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.049119 B = 0.003646 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.902798 B = 7678.312382 C = 7835.247435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.023 3.977 3 Si 0.953 3.047 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.537 4.537 8 H 0.048 0.952 9 C 0.037 3.963 10 H 0.017 0.983 11 C -0.100 4.100 12 C 0.102 3.898 13 N -0.617 5.617 14 C 0.514 3.486 15 O -0.591 6.591 16 C -0.116 4.116 17 C -0.047 4.047 18 H 0.058 0.942 19 C -0.117 4.117 20 C -0.095 4.095 21 C -0.165 4.165 22 H 0.124 0.876 23 C -0.153 4.153 24 C -0.164 4.164 25 H 0.128 0.872 26 C 0.121 3.879 27 H 0.264 0.736 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.069 0.931 35 H 0.049 0.951 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.115 0.885 40 H 0.041 0.959 41 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.295 -17.723 8.391 19.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.178 4.178 3 Si 0.779 3.221 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.575 4.575 8 H 0.066 0.934 9 C 0.018 3.982 10 H 0.035 0.965 11 C -0.138 4.138 12 C -0.019 4.019 13 N -0.350 5.350 14 C 0.305 3.695 15 O -0.473 6.473 16 C -0.155 4.155 17 C -0.065 4.065 18 H 0.076 0.924 19 C -0.155 4.155 20 C -0.133 4.133 21 C -0.183 4.183 22 H 0.142 0.858 23 C -0.189 4.189 24 C -0.182 4.182 25 H 0.146 0.854 26 C -0.002 4.002 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.117 0.883 31 H 0.096 0.904 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.134 0.866 40 H 0.059 0.941 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.854 -17.841 8.190 19.719 hybrid contribution 0.637 1.405 -0.449 1.607 sum -1.217 -16.436 7.741 18.208 Atomic orbital electron populations 1.70034 1.06814 1.27456 1.50474 1.25619 0.95746 1.01982 0.94410 0.85575 0.78863 0.79826 0.77811 1.19827 1.20456 1.20260 1.21345 0.92755 0.91585 1.51855 0.93391 1.19645 0.92820 0.91041 0.94703 0.96469 1.22499 1.00723 0.92495 0.98109 1.22572 0.83494 0.94687 1.01177 1.48857 1.19973 1.18324 1.47823 1.21196 0.86106 0.80708 0.81503 1.90626 1.22828 1.74977 1.58869 1.21698 0.99723 0.94599 0.99493 1.21266 0.97769 0.92679 0.94834 0.92394 1.22702 1.01285 0.94576 0.96897 1.21941 0.99189 0.96545 0.95617 1.23320 1.03123 0.97737 0.94120 0.85778 1.23139 0.99069 1.01726 0.94996 1.23253 1.01553 0.91698 1.01686 0.85424 1.21944 0.96909 0.89334 0.91988 0.92712 0.93811 0.91017 0.88296 0.90373 0.86992 0.86785 0.91189 0.93253 0.92194 0.90204 0.89870 0.86636 0.94095 0.94260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.91 12.11 21.45 0.26 -49.66 16 2 C 0.02 1.21 5.33 84.65 0.45 1.66 16 3 Si 0.95 42.84 29.54 68.60 2.03 44.86 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.54 -29.31 8.50 25.60 0.22 -29.09 16 8 H 0.05 2.65 7.57 -2.91 -0.02 2.63 16 9 C 0.04 1.81 2.88 -10.35 -0.03 1.78 16 10 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 11 C -0.10 -4.25 5.75 31.98 0.18 -4.07 16 12 C 0.10 3.31 6.69 86.85 0.58 3.89 16 13 N -0.62 -23.19 3.33 -811.79 -2.70 -25.89 16 14 C 0.51 18.11 7.66 87.66 0.67 18.78 16 15 O -0.59 -25.28 15.06 -3.05 -0.05 -25.33 16 16 C -0.12 -2.76 4.18 29.85 0.12 -2.64 16 17 C -0.05 -1.10 2.24 -9.72 -0.02 -1.12 16 18 H 0.06 1.65 7.90 -2.39 -0.02 1.63 16 19 C -0.12 -2.82 5.75 31.89 0.18 -2.63 16 20 C -0.10 -1.82 6.62 31.67 0.21 -1.62 16 21 C -0.17 -2.68 6.94 -10.07 -0.07 -2.75 16 22 H 0.12 1.62 8.14 -2.38 -0.02 1.60 16 23 C -0.15 -2.40 10.07 30.59 0.31 -2.09 16 24 C -0.16 -2.86 6.36 -10.07 -0.06 -2.93 16 25 H 0.13 1.81 8.05 -2.39 -0.02 1.79 16 26 C 0.12 5.46 6.45 86.73 0.56 6.02 16 27 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 28 H 0.04 1.97 8.04 -2.39 -0.02 1.95 16 29 H 0.07 3.23 7.54 -2.39 -0.02 3.21 16 30 H 0.10 2.48 7.48 -2.38 -0.02 2.46 16 31 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.11 2.24 7.85 -2.39 -0.02 2.22 16 33 H 0.11 2.23 8.02 -2.39 -0.02 2.21 16 34 H 0.07 1.58 7.96 -2.39 -0.02 1.56 16 35 H 0.05 1.48 7.29 -2.39 -0.02 1.46 16 36 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.04 1.90 7.66 -2.39 -0.02 1.88 16 Total: -1.00 -63.34 325.58 3.83 -59.51 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.99 Total: 13.30 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: 3.31 Total: -16.80 kcal Atomic # 7 Polarization: -73.11 SS G_CDS: -2.44 Total: -75.55 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.05 Total: -25.33 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -63.34 3.83 -59.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716920587.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.114 kcal (2) G-P(sol) polarization free energy of solvation -63.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds