Wall clock time and date at job start Mon Mar 30 2020 06:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99528 * 2 1 4 4 H 1.48507 * 109.46977 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47150 * 299.99447 * 3 2 1 6 6 H 1.48498 * 109.47528 * 59.99973 * 3 2 1 7 7 C 1.37870 * 120.00302 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00239 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00167 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47360 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47279 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47101 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.46645 * 179.97438 * 12 11 10 14 14 C 1.46905 * 110.99716 * 169.99784 * 13 12 11 15 15 C 1.50696 * 109.47252 * 285.10061 * 14 13 12 16 16 C 1.41386 * 126.57664 * 275.29783 * 15 14 13 17 17 C 1.34508 * 106.84063 * 179.83560 * 16 15 14 18 18 O 1.34310 * 108.41987 * 0.43073 * 17 16 15 19 19 C 1.34301 * 109.47435 * 359.72432 * 18 17 16 20 20 C 1.46895 * 111.00165 * 293.95398 * 13 12 11 21 21 C 1.53000 * 117.49805 * 246.97653 * 20 13 12 22 22 C 1.52995 * 60.00449 * 252.51320 * 21 20 13 23 23 H 0.97004 * 120.00441 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47069 * 59.99300 * 9 7 2 25 25 H 1.09005 * 109.46690 * 300.00036 * 9 7 2 26 26 H 1.08998 * 109.47662 * 59.99589 * 10 9 7 27 27 H 1.09005 * 109.46741 * 299.99950 * 10 9 7 28 28 H 1.09005 * 109.46704 * 299.99921 * 11 10 9 29 29 H 1.08998 * 109.47136 * 59.99234 * 11 10 9 30 30 H 1.08995 * 109.47090 * 300.00021 * 12 11 10 31 31 H 1.09001 * 109.46786 * 59.99942 * 12 11 10 32 32 H 1.09004 * 109.46745 * 45.09652 * 14 13 12 33 33 H 1.08994 * 109.46862 * 165.09325 * 14 13 12 34 34 H 1.08005 * 126.58071 * 359.97438 * 16 15 14 35 35 H 1.08008 * 125.79281 * 180.11575 * 17 16 15 36 36 H 1.07999 * 125.78797 * 180.02562 * 19 18 17 37 37 H 1.08999 * 115.55413 * 32.68899 * 20 13 12 38 38 H 1.09005 * 117.49977 * 0.02562 * 21 20 13 39 39 H 1.09000 * 117.50017 * 145.02030 * 21 20 13 40 40 H 1.08999 * 117.49959 * 252.51284 * 22 21 20 41 41 H 1.09004 * 117.52055 * 107.47772 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4805 -4.9871 0.0012 12 6 2.4748 -6.1500 0.0018 13 7 1.7403 -7.4221 0.0018 14 6 2.6469 -8.5534 -0.2358 15 6 3.0370 -8.5875 -1.6910 16 6 2.3087 -9.1861 -2.7447 17 6 3.0133 -8.9797 -3.8717 18 8 4.1280 -8.2999 -3.5569 19 6 4.1477 -8.0594 -2.2357 20 6 0.9944 -7.5994 1.2548 21 6 1.4432 -8.7231 2.1912 22 6 0.1428 -8.8626 1.3974 23 1 -0.4851 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.8714 -3.6039 0.8922 27 1 2.8727 -3.6046 -0.8878 28 1 0.8528 -5.0447 0.8905 29 1 0.8547 -5.0450 -0.8894 30 1 3.1021 -6.0921 -0.8877 31 1 3.1008 -6.0922 0.8923 32 1 3.5407 -8.4377 0.3774 33 1 2.1437 -9.4837 0.0275 34 1 1.3663 -9.7071 -2.6610 35 1 2.7329 -9.3095 -4.8613 36 1 4.9234 -7.5311 -1.7014 37 1 0.6173 -6.6841 1.7111 38 1 2.2922 -9.3306 1.8777 39 1 1.3617 -8.5471 3.2638 40 1 -0.7943 -8.7783 1.9477 41 1 0.1357 -9.5618 0.5612 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723743404.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:20 Heat of formation + Delta-G solvation = 32.526368 kcal Electronic energy + Delta-G solvation = -19399.384688 eV Core-core repulsion = 16474.547509 eV Total energy + Delta-G solvation = -2924.837179 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.57944 -39.10349 -35.25349 -34.27872 -32.92877 -31.67074 -29.83092 -28.38026 -25.95763 -24.20174 -22.48034 -22.09712 -21.58204 -20.78790 -19.91971 -19.43936 -17.55792 -16.45169 -16.14186 -16.06065 -15.54084 -14.86461 -14.53339 -14.43055 -14.03290 -13.49237 -12.84707 -12.76821 -12.74046 -12.37363 -12.29276 -11.74508 -11.58970 -11.45607 -11.27442 -11.07953 -10.86533 -10.46256 -10.42366 -10.34189 -10.27207 -9.74883 -9.56795 -9.22018 -8.96108 -8.61101 -8.30366 -8.07818 -5.95205 -3.97269 1.72030 2.51565 3.10523 3.33492 3.40733 3.45009 3.71242 4.05400 4.49720 4.67155 4.76846 4.81758 4.89865 4.94065 5.01605 5.28886 5.35456 5.40342 5.47644 5.54443 5.61078 5.71969 5.76146 5.86730 5.94101 5.99624 6.03294 6.10386 6.21147 6.29946 6.43137 6.56418 6.86448 7.00347 7.05926 7.09236 7.15875 7.29166 7.74498 7.90540 8.06231 8.49100 9.10511 9.66556 11.16196 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.018491 B = 0.003957 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.872639 B = 7073.766796 C = 8137.788642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.112 4.112 12 C 0.057 3.943 13 N -0.501 5.501 14 C 0.118 3.882 15 C -0.167 4.167 16 C -0.193 4.193 17 C -0.049 4.049 18 O -0.178 6.178 19 C -0.037 4.037 20 C 0.028 3.972 21 C -0.225 4.225 22 C -0.174 4.174 23 H 0.259 0.741 24 H 0.015 0.985 25 H 0.014 0.986 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.033 0.967 32 H 0.044 0.956 33 H 0.083 0.917 34 H 0.145 0.855 35 H 0.200 0.800 36 H 0.198 0.802 37 H 0.126 0.874 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.010 -21.654 -1.361 22.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.150 4.150 12 C -0.070 4.070 13 N -0.223 5.223 14 C -0.010 4.010 15 C -0.169 4.169 16 C -0.213 4.213 17 C -0.116 4.116 18 O -0.073 6.073 19 C -0.105 4.105 20 C -0.082 4.082 21 C -0.265 4.265 22 C -0.212 4.212 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.032 0.968 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.102 0.898 34 H 0.163 0.837 35 H 0.216 0.784 36 H 0.215 0.785 37 H 0.144 0.856 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.115 0.885 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.756 -21.422 -1.967 22.032 hybrid contribution 0.718 0.874 0.765 1.366 sum 5.474 -20.548 -1.201 21.299 Atomic orbital electron populations 1.69980 1.06042 1.26369 1.51182 1.25028 0.94828 0.99203 0.95460 0.86568 0.80130 0.83949 0.77547 1.19775 1.21028 1.21058 1.21329 0.93038 0.91217 1.50115 0.92745 1.19090 0.94027 0.91336 0.97141 1.21595 0.99090 0.94022 0.99986 1.21663 0.97808 0.93485 1.02009 1.22267 0.96081 0.88214 1.00426 1.61831 1.27040 1.02164 1.31245 1.20487 0.95064 0.95072 0.90333 1.20286 0.95969 1.03890 0.96748 1.21658 1.01980 1.05589 0.92033 1.23979 0.87004 1.00280 1.00346 1.84065 1.39438 1.58599 1.25227 1.23877 1.01372 1.04324 0.80961 1.22763 1.00793 0.93972 0.90650 1.23583 0.99021 1.05257 0.98604 1.23045 0.94852 1.00953 1.02318 0.93130 0.96618 0.96756 0.93707 0.93535 0.92619 0.91731 0.90861 0.94894 0.93787 0.89826 0.83689 0.78367 0.78520 0.85592 0.88659 0.88890 0.88515 0.88801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 11 C -0.11 -1.98 5.21 -26.73 -0.14 -2.12 16 12 C 0.06 0.83 4.79 -3.82 -0.02 0.82 16 13 N -0.50 -6.63 4.65 -228.08 -1.06 -7.69 16 14 C 0.12 1.32 4.14 -4.97 -0.02 1.30 16 15 C -0.17 -1.97 5.19 -104.75 -0.54 -2.51 16 16 C -0.19 -2.15 10.87 -39.70 -0.43 -2.58 16 17 C -0.05 -0.50 12.09 29.41 0.36 -0.14 16 18 O -0.18 -2.12 10.65 5.70 0.06 -2.06 16 19 C -0.04 -0.42 11.02 29.41 0.32 -0.09 16 20 C 0.03 0.34 5.83 -67.71 -0.39 -0.06 16 21 C -0.23 -2.27 9.56 -26.73 -0.26 -2.52 16 22 C -0.17 -1.79 9.91 -26.73 -0.26 -2.06 16 23 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.06 0.97 6.40 -51.93 -0.33 0.64 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.07 1.07 6.61 -51.93 -0.34 0.73 16 31 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 32 H 0.04 0.47 7.82 -51.93 -0.41 0.06 16 33 H 0.08 0.87 5.59 -51.93 -0.29 0.58 16 34 H 0.15 1.42 8.06 -52.48 -0.42 0.99 16 35 H 0.20 1.29 8.06 -52.48 -0.42 0.87 16 36 H 0.20 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.13 1.66 6.34 -51.93 -0.33 1.33 16 38 H 0.10 0.90 6.03 -51.93 -0.31 0.59 16 39 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.09 0.95 7.45 -51.93 -0.39 0.56 16 LS Contribution 334.33 15.07 5.04 5.04 Total: -1.00 -31.92 334.33 -8.91 -40.83 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -6.59 Total: -0.53 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -2.08 Total: -25.81 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: -0.32 Total: -34.46 kcal Atomic # 8 Polarization: -2.12 SS G_CDS: 0.06 Total: -2.06 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.92 -8.91 -40.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723743404.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.360 kcal (2) G-P(sol) polarization free energy of solvation -31.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds