Wall clock time and date at job start Mon Mar 30 2020 06:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99528 * 2 1 4 4 H 1.48507 * 109.46977 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47150 * 299.99447 * 3 2 1 6 6 H 1.48498 * 109.47528 * 59.99973 * 3 2 1 7 7 C 1.37870 * 120.00302 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00239 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00167 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47360 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47279 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47101 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.46645 * 179.97438 * 12 11 10 14 14 C 1.46905 * 110.99716 * 169.99784 * 13 12 11 15 15 C 1.50696 * 109.47252 * 285.10061 * 14 13 12 16 16 C 1.41386 * 126.57664 * 275.29783 * 15 14 13 17 17 C 1.34508 * 106.84063 * 179.83560 * 16 15 14 18 18 O 1.34310 * 108.41987 * 0.43073 * 17 16 15 19 19 C 1.34301 * 109.47435 * 359.72432 * 18 17 16 20 20 C 1.46895 * 111.00165 * 293.95398 * 13 12 11 21 21 C 1.53000 * 117.49805 * 246.97653 * 20 13 12 22 22 C 1.52995 * 60.00449 * 252.51320 * 21 20 13 23 23 H 0.97004 * 120.00441 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47069 * 59.99300 * 9 7 2 25 25 H 1.09005 * 109.46690 * 300.00036 * 9 7 2 26 26 H 1.08998 * 109.47662 * 59.99589 * 10 9 7 27 27 H 1.09005 * 109.46741 * 299.99950 * 10 9 7 28 28 H 1.09005 * 109.46704 * 299.99921 * 11 10 9 29 29 H 1.08998 * 109.47136 * 59.99234 * 11 10 9 30 30 H 1.08995 * 109.47090 * 300.00021 * 12 11 10 31 31 H 1.09001 * 109.46786 * 59.99942 * 12 11 10 32 32 H 1.09004 * 109.46745 * 45.09652 * 14 13 12 33 33 H 1.08994 * 109.46862 * 165.09325 * 14 13 12 34 34 H 1.08005 * 126.58071 * 359.97438 * 16 15 14 35 35 H 1.08008 * 125.79281 * 180.11575 * 17 16 15 36 36 H 1.07999 * 125.78797 * 180.02562 * 19 18 17 37 37 H 1.08999 * 115.55413 * 32.68899 * 20 13 12 38 38 H 1.09005 * 117.49977 * 0.02562 * 21 20 13 39 39 H 1.09000 * 117.50017 * 145.02030 * 21 20 13 40 40 H 1.08999 * 117.49959 * 252.51284 * 22 21 20 41 41 H 1.09004 * 117.52055 * 107.47772 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4805 -4.9871 0.0012 12 6 2.4748 -6.1500 0.0018 13 7 1.7403 -7.4221 0.0018 14 6 2.6469 -8.5534 -0.2358 15 6 3.0370 -8.5875 -1.6910 16 6 2.3087 -9.1861 -2.7447 17 6 3.0133 -8.9797 -3.8717 18 8 4.1280 -8.2999 -3.5569 19 6 4.1477 -8.0594 -2.2357 20 6 0.9944 -7.5994 1.2548 21 6 1.4432 -8.7231 2.1912 22 6 0.1428 -8.8626 1.3974 23 1 -0.4851 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.8714 -3.6039 0.8922 27 1 2.8727 -3.6046 -0.8878 28 1 0.8528 -5.0447 0.8905 29 1 0.8547 -5.0450 -0.8894 30 1 3.1021 -6.0921 -0.8877 31 1 3.1008 -6.0922 0.8923 32 1 3.5407 -8.4377 0.3774 33 1 2.1437 -9.4837 0.0275 34 1 1.3663 -9.7071 -2.6610 35 1 2.7329 -9.3095 -4.8613 36 1 4.9234 -7.5311 -1.7014 37 1 0.6173 -6.6841 1.7111 38 1 2.2922 -9.3306 1.8777 39 1 1.3617 -8.5471 3.2638 40 1 -0.7943 -8.7783 1.9477 41 1 0.1357 -9.5618 0.5612 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723743404.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:20 Heat of formation + Delta-G solvation = 14.198561 kcal Electronic energy + Delta-G solvation = -19400.179442 eV Core-core repulsion = 16474.547509 eV Total energy + Delta-G solvation = -2925.631932 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.40211 -40.05990 -36.75117 -35.45633 -34.56101 -33.09713 -30.87467 -29.82940 -27.30608 -25.71711 -23.61747 -23.21569 -22.40510 -22.10119 -21.33669 -20.41226 -18.46725 -18.37803 -17.30177 -17.00954 -16.57631 -16.48372 -15.94448 -15.62799 -14.98069 -14.73749 -14.41808 -13.95744 -13.74528 -13.62067 -13.47242 -13.36280 -12.97767 -12.84257 -12.55570 -12.33525 -12.22484 -12.17147 -12.05202 -11.66396 -11.33487 -11.29620 -11.17763 -11.00368 -10.56437 -10.55782 -9.43057 -9.03394 -8.19793 -6.31411 0.90415 1.39562 1.40111 1.53614 1.67887 2.35287 2.40971 2.81125 3.13016 3.14129 3.82453 3.90981 3.97396 4.00652 4.10933 4.14118 4.21531 4.34274 4.48420 4.55838 4.60462 4.67332 4.76353 4.77063 4.85016 4.91044 5.00365 5.08138 5.17725 5.23658 5.25462 5.28685 5.32843 5.36052 5.55102 5.62869 5.77411 5.86620 6.13474 6.14643 6.26034 6.26817 6.86226 7.38093 8.92418 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.018491 B = 0.003957 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.872639 B = 7073.766796 C = 8137.788642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.024 3.976 10 C -0.095 4.095 11 C -0.100 4.100 12 C 0.069 3.931 13 N -0.512 5.512 14 C 0.122 3.878 15 C -0.183 4.183 16 C -0.213 4.213 17 C -0.048 4.048 18 O -0.192 6.192 19 C -0.048 4.048 20 C 0.001 3.999 21 C -0.208 4.208 22 C -0.166 4.166 23 H 0.263 0.737 24 H -0.013 1.013 25 H -0.011 1.011 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.040 0.960 32 H 0.053 0.947 33 H 0.093 0.907 34 H 0.154 0.846 35 H 0.232 0.768 36 H 0.215 0.785 37 H 0.110 0.890 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.327 -22.357 -1.233 23.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.014 4.014 10 C -0.133 4.133 11 C -0.138 4.138 12 C -0.058 4.058 13 N -0.233 5.233 14 C -0.004 4.004 15 C -0.184 4.184 16 C -0.233 4.233 17 C -0.115 4.115 18 O -0.088 6.088 19 C -0.116 4.116 20 C -0.108 4.108 21 C -0.247 4.247 22 C -0.204 4.204 23 H 0.072 0.928 24 H 0.005 0.995 25 H 0.008 0.992 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.112 0.888 34 H 0.172 0.828 35 H 0.248 0.752 36 H 0.232 0.768 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.078 -22.148 -1.833 23.040 hybrid contribution 0.238 1.058 0.715 1.299 sum 6.316 -21.090 -1.118 22.044 Atomic orbital electron populations 1.70116 1.07890 1.27695 1.51850 1.26017 0.95776 1.03474 0.94714 0.85381 0.79094 0.78640 0.77828 1.18485 1.20348 1.20250 1.21765 0.93570 0.92463 1.50328 0.92152 1.19013 0.94488 0.93353 0.94499 1.21390 0.97950 0.93588 1.00408 1.21470 0.97968 0.93284 1.01098 1.22010 0.95044 0.87935 1.00802 1.61766 1.27431 1.02038 1.32112 1.20496 0.95108 0.94547 0.90297 1.20490 0.96404 1.04369 0.97181 1.21921 1.02681 1.06289 0.92371 1.24648 0.86121 0.99115 1.01597 1.84067 1.40192 1.58971 1.25575 1.24286 1.01925 1.04461 0.80944 1.22746 1.02489 0.94341 0.91219 1.23611 0.99090 1.03377 0.98666 1.23103 0.95392 0.99428 1.02466 0.92786 0.99504 0.99224 0.92926 0.93243 0.92841 0.93388 0.90763 0.94154 0.92889 0.88838 0.82806 0.75225 0.76808 0.87181 0.87678 0.88101 0.87751 0.88423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.41 13.29 21.44 0.28 -58.13 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 3 Si 0.97 45.08 29.54 68.60 2.03 47.11 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.54 -31.90 9.11 25.60 0.23 -31.67 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.02 1.30 4.97 29.85 0.15 1.45 16 10 C -0.10 -4.05 5.15 30.59 0.16 -3.89 16 11 C -0.10 -3.59 5.21 30.60 0.16 -3.43 16 12 C 0.07 1.98 4.79 86.30 0.41 2.39 16 13 N -0.51 -13.03 4.65 -875.52 -4.07 -17.10 16 14 C 0.12 2.55 4.14 85.55 0.35 2.90 16 15 C -0.18 -4.07 5.19 -19.94 -0.10 -4.17 16 16 C -0.21 -4.48 10.87 22.19 0.24 -4.24 16 17 C -0.05 -0.91 12.09 66.97 0.81 -0.10 16 18 O -0.19 -4.37 10.65 -2.53 -0.03 -4.39 16 19 C -0.05 -1.03 11.02 66.97 0.74 -0.29 16 20 C 0.00 0.03 5.83 44.92 0.26 0.29 16 21 C -0.21 -3.76 9.56 30.59 0.29 -3.46 16 22 C -0.17 -3.16 9.91 30.60 0.30 -2.85 16 23 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 24 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 25 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 26 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 28 H 0.05 1.92 6.40 -2.38 -0.02 1.91 16 29 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.07 2.10 6.61 -2.39 -0.02 2.08 16 31 H 0.04 1.09 8.12 -2.39 -0.02 1.07 16 32 H 0.05 1.01 7.82 -2.38 -0.02 0.99 16 33 H 0.09 1.75 5.59 -2.39 -0.01 1.73 16 34 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 35 H 0.23 2.48 8.06 -2.91 -0.02 2.46 16 36 H 0.22 3.51 8.06 -2.91 -0.02 3.48 16 37 H 0.11 2.91 6.34 -2.39 -0.02 2.90 16 38 H 0.10 1.70 6.03 -2.38 -0.01 1.68 16 39 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.10 1.79 7.45 -2.38 -0.02 1.77 16 Total: -1.00 -68.78 334.33 3.68 -65.10 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.99 Total: 14.18 kcal Atomic # 6 Polarization: -51.24 SS G_CDS: 4.47 Total: -46.76 kcal Atomic # 7 Polarization: -71.44 SS G_CDS: -3.78 Total: -75.23 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: -0.03 Total: -4.39 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -68.78 3.68 -65.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723743404.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.295 kcal (2) G-P(sol) polarization free energy of solvation -68.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds