Wall clock time and date at job start Mon Mar 30 2020 06:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50696 * 109.46697 * 2 1 4 4 C 1.38162 * 120.03069 * 264.99419 * 3 2 1 5 5 C 1.38242 * 120.05894 * 180.02562 * 4 3 2 6 6 C 1.38283 * 120.11350 * 359.97438 * 5 4 3 7 7 C 1.38131 * 120.05207 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.02443 * 179.97438 * 7 6 5 9 9 C 1.52994 * 109.47230 * 94.58692 * 8 7 6 10 10 N 1.46901 * 109.47107 * 182.32859 * 9 8 7 11 11 C 1.38714 * 120.02929 * 85.02533 * 3 2 1 12 12 O 1.35897 * 120.05347 * 359.94466 * 11 3 2 13 13 C 1.42906 * 116.99901 * 90.33251 * 12 11 3 14 14 C 1.52993 * 109.47284 * 175.88693 * 13 12 11 15 15 C 1.50703 * 109.47270 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99732 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00271 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00236 * 180.02562 * 17 15 14 19 19 Si 1.86808 * 119.99994 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47320 * 89.99875 * 19 17 15 21 21 H 1.48496 * 109.46881 * 210.00052 * 19 17 15 22 22 H 1.48499 * 109.46815 * 329.99745 * 19 17 15 23 23 H 1.08992 * 109.47348 * 299.99993 * 1 2 3 24 24 H 1.09002 * 109.46848 * 60.00484 * 1 2 3 25 25 H 1.09005 * 109.46837 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47053 * 239.99591 * 2 1 3 27 27 H 1.09004 * 109.46577 * 119.99977 * 2 1 3 28 28 H 1.08005 * 119.96878 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.94041 * 179.72406 * 5 4 3 30 30 H 1.07998 * 119.97487 * 180.02562 * 6 5 4 31 31 H 1.09005 * 109.46942 * 214.58809 * 8 7 6 32 32 H 1.08999 * 109.47286 * 334.58738 * 8 7 6 33 33 H 1.09001 * 109.47313 * 302.33026 * 9 8 7 34 34 H 1.09005 * 109.47162 * 62.33421 * 9 8 7 35 35 H 1.00904 * 111.00194 * 179.97438 * 10 9 8 36 36 H 1.00891 * 111.00437 * 303.95779 * 10 9 8 37 37 H 1.08996 * 109.47018 * 295.88984 * 13 12 11 38 38 H 1.09002 * 109.47056 * 55.89093 * 13 12 11 39 39 H 1.09002 * 109.47726 * 300.00019 * 14 13 12 40 40 H 1.09003 * 109.47259 * 60.00080 * 14 13 12 41 41 H 0.97004 * 120.00354 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3611 2.0380 -1.1916 5 6 2.8224 3.3412 -1.1922 6 6 2.9554 4.0306 -0.0009 7 6 2.6280 3.4181 1.1931 8 6 2.7738 4.1699 2.4910 9 6 1.4348 4.8098 2.8629 10 7 1.5907 5.5886 4.0987 11 6 2.1655 2.1100 1.1964 12 8 1.8422 1.5054 2.3698 13 6 2.8853 0.7992 3.0446 14 6 2.3636 0.2772 4.3848 15 6 3.4638 -0.4670 5.0967 16 1 4.4379 -0.5581 4.6392 17 6 3.2269 -1.0315 6.3321 18 7 4.1872 -1.6805 6.9536 19 14 1.5419 -0.8745 7.1232 20 1 0.6933 -2.0217 6.7124 21 1 1.6874 -0.8704 8.6010 22 1 0.9057 0.3938 6.6849 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.2577 1.5017 -2.1234 29 1 3.0832 3.8202 -2.1244 30 1 3.3156 5.0488 -0.0041 31 1 3.0779 3.4800 3.2783 32 1 3.5291 4.9475 2.3777 33 1 1.1105 5.4682 2.0570 34 1 0.6894 4.0295 3.0168 35 1 0.7194 6.0220 4.3654 36 1 1.9524 5.0140 4.8450 37 1 3.2124 -0.0397 2.4304 38 1 3.7255 1.4714 3.2188 39 1 2.0365 1.1161 4.9991 40 1 1.5234 -0.3950 4.2107 41 1 4.0204 -2.0780 7.8226 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821984707.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:02 Heat of formation + Delta-G solvation = -41.886155 kcal Electronic energy + Delta-G solvation = -20119.520887 eV Core-core repulsion = 17191.456939 eV Total energy + Delta-G solvation = -2928.063948 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.13192 -37.04930 -35.70734 -33.80400 -33.30116 -31.34861 -30.61991 -28.76998 -27.28138 -25.03073 -23.72345 -22.65088 -21.29965 -20.71812 -20.18305 -17.61637 -16.54705 -16.50426 -15.85529 -15.26044 -14.83448 -14.50397 -14.26376 -14.07334 -13.78181 -13.74825 -13.39919 -13.12346 -12.70181 -12.53040 -12.15699 -11.98497 -11.64624 -11.53102 -11.31531 -11.24161 -10.92563 -10.89816 -10.75803 -10.38329 -10.09682 -9.91514 -9.35410 -9.19128 -8.70221 -8.62422 -8.51812 -8.28896 -6.13642 -4.14084 1.36853 1.41479 3.26520 3.34006 3.38456 3.63161 4.30958 4.37848 4.55312 4.81828 4.90972 5.10416 5.20321 5.24092 5.26672 5.35491 5.47973 5.53360 5.58877 5.61136 5.71399 5.87742 5.95353 5.97280 6.03748 6.08375 6.10091 6.21547 6.32158 6.40269 6.52499 6.53762 6.61285 6.75990 6.86417 7.13100 7.14124 7.25744 7.44975 7.64067 8.07729 8.39885 8.88123 9.46960 10.99083 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.016376 B = 0.006048 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.357364 B = 4628.570229 C = 5556.943923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 C -0.101 4.101 4 C -0.112 4.112 5 C -0.131 4.131 6 C -0.110 4.110 7 C -0.102 4.102 8 C -0.076 4.076 9 C 0.071 3.929 10 N -0.854 5.854 11 C 0.116 3.884 12 O -0.341 6.341 13 C 0.083 3.917 14 C -0.006 4.006 15 C -0.525 4.525 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.898 5.898 19 Si 0.880 3.120 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.264 1.264 23 H 0.061 0.939 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.035 0.965 35 H 0.339 0.661 36 H 0.344 0.656 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.024 0.976 40 H 0.021 0.979 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.087 10.169 -14.300 18.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.120 4.120 3 C -0.102 4.102 4 C -0.130 4.130 5 C -0.149 4.149 6 C -0.128 4.128 7 C -0.103 4.103 8 C -0.114 4.114 9 C -0.060 4.060 10 N -0.383 5.383 11 C 0.071 3.929 12 O -0.259 6.259 13 C 0.010 3.990 14 C -0.043 4.043 15 C -0.563 4.563 16 H 0.091 0.909 17 C -0.129 4.129 18 N -0.536 5.536 19 Si 0.707 3.293 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.189 1.189 23 H 0.080 0.920 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.139 0.861 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.151 0.849 36 H 0.157 0.843 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.042 0.958 40 H 0.039 0.961 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.691 10.489 -14.446 18.737 hybrid contribution -1.234 -0.711 0.760 1.614 sum -6.924 9.778 -13.686 18.190 Atomic orbital electron populations 1.21678 0.94670 1.01522 1.01958 1.20462 0.96400 0.92243 1.02902 1.20257 1.00329 0.96859 0.92754 1.20884 1.00016 0.95109 0.96976 1.21032 1.01191 0.94872 0.97824 1.20898 1.00625 0.99701 0.91572 1.20160 0.99835 0.94568 0.95704 1.20464 0.97788 0.98765 0.94379 1.21678 0.96352 0.95520 0.92430 1.58770 1.34235 1.38041 1.07286 1.18480 0.97405 0.90807 0.86176 1.86030 1.37843 1.69376 1.32608 1.22917 0.88449 0.93521 0.94104 1.19543 0.97732 0.96456 0.90595 1.20872 0.98103 1.34176 1.03150 0.90851 1.24927 0.96905 0.94377 0.96736 1.69895 1.32580 1.35745 1.15429 0.86772 0.84759 0.79334 0.78445 1.20120 1.21223 1.18893 0.92019 0.93222 0.92579 0.91516 0.90257 0.86149 0.86220 0.86015 0.90313 0.90624 0.91558 0.94715 0.84944 0.84307 0.93550 0.93599 0.95809 0.96074 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.90 37.16 0.37 -1.43 16 2 C -0.08 -1.14 5.79 -27.88 -0.16 -1.30 16 3 C -0.10 -1.49 5.15 -104.48 -0.54 -2.03 16 4 C -0.11 -1.39 9.68 -39.61 -0.38 -1.77 16 5 C -0.13 -1.52 10.04 -39.56 -0.40 -1.92 16 6 C -0.11 -1.38 9.68 -39.60 -0.38 -1.77 16 7 C -0.10 -1.50 5.15 -104.47 -0.54 -2.04 16 8 C -0.08 -1.10 5.33 -27.89 -0.15 -1.25 16 9 C 0.07 0.95 6.77 -3.83 -0.03 0.92 16 10 N -0.85 -10.51 9.62 -10.37 -0.10 -10.61 16 11 C 0.12 1.90 5.67 -39.22 -0.22 1.68 16 12 O -0.34 -6.41 8.60 -19.42 -0.17 -6.57 16 13 C 0.08 1.72 5.32 37.15 0.20 1.91 16 14 C -0.01 -0.14 4.41 -27.89 -0.12 -0.26 16 15 C -0.53 -14.76 9.66 -34.44 -0.33 -15.09 16 16 H 0.07 2.20 7.99 -52.48 -0.42 1.79 16 17 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 18 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 19 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 23 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.78 8.05 -51.93 -0.42 0.36 16 27 H 0.08 1.25 6.41 -51.93 -0.33 0.92 16 28 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 29 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 30 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 31 H 0.08 1.29 6.44 -51.93 -0.33 0.96 16 32 H 0.08 1.01 8.05 -51.93 -0.42 0.59 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.34 3.50 9.08 -39.29 -0.36 3.14 16 36 H 0.34 4.32 8.99 -39.30 -0.35 3.96 16 37 H 0.05 0.95 7.12 -51.93 -0.37 0.58 16 38 H 0.05 0.94 7.26 -51.93 -0.38 0.57 16 39 H 0.02 0.57 7.20 -51.93 -0.37 0.20 16 40 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 41 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 335.77 15.07 5.06 5.06 Total: -1.00 -30.18 335.77 -8.58 -38.77 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -6.70 Total: 5.37 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: -2.79 Total: -22.35 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.67 Total: -37.10 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -0.17 Total: -6.57 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.18 -8.58 -38.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821984707.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.120 kcal (2) G-P(sol) polarization free energy of solvation -30.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds