Wall clock time and date at job start Mon Mar 30 2020 06:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50696 * 109.46697 * 2 1 4 4 C 1.38162 * 120.03069 * 264.99419 * 3 2 1 5 5 C 1.38242 * 120.05894 * 180.02562 * 4 3 2 6 6 C 1.38283 * 120.11350 * 359.97438 * 5 4 3 7 7 C 1.38131 * 120.05207 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.02443 * 179.97438 * 7 6 5 9 9 C 1.52994 * 109.47230 * 94.58692 * 8 7 6 10 10 N 1.46901 * 109.47107 * 182.32859 * 9 8 7 11 11 C 1.38714 * 120.02929 * 85.02533 * 3 2 1 12 12 O 1.35897 * 120.05347 * 359.94466 * 11 3 2 13 13 C 1.42906 * 116.99901 * 90.33251 * 12 11 3 14 14 C 1.52993 * 109.47284 * 175.88693 * 13 12 11 15 15 C 1.50703 * 109.47270 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99732 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00271 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00236 * 180.02562 * 17 15 14 19 19 Si 1.86808 * 119.99994 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47320 * 89.99875 * 19 17 15 21 21 H 1.48496 * 109.46881 * 210.00052 * 19 17 15 22 22 H 1.48499 * 109.46815 * 329.99745 * 19 17 15 23 23 H 1.08992 * 109.47348 * 299.99993 * 1 2 3 24 24 H 1.09002 * 109.46848 * 60.00484 * 1 2 3 25 25 H 1.09005 * 109.46837 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47053 * 239.99591 * 2 1 3 27 27 H 1.09004 * 109.46577 * 119.99977 * 2 1 3 28 28 H 1.08005 * 119.96878 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.94041 * 179.72406 * 5 4 3 30 30 H 1.07998 * 119.97487 * 180.02562 * 6 5 4 31 31 H 1.09005 * 109.46942 * 214.58809 * 8 7 6 32 32 H 1.08999 * 109.47286 * 334.58738 * 8 7 6 33 33 H 1.09001 * 109.47313 * 302.33026 * 9 8 7 34 34 H 1.09005 * 109.47162 * 62.33421 * 9 8 7 35 35 H 1.00904 * 111.00194 * 179.97438 * 10 9 8 36 36 H 1.00891 * 111.00437 * 303.95779 * 10 9 8 37 37 H 1.08996 * 109.47018 * 295.88984 * 13 12 11 38 38 H 1.09002 * 109.47056 * 55.89093 * 13 12 11 39 39 H 1.09002 * 109.47726 * 300.00019 * 14 13 12 40 40 H 1.09003 * 109.47259 * 60.00080 * 14 13 12 41 41 H 0.97004 * 120.00354 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3611 2.0380 -1.1916 5 6 2.8224 3.3412 -1.1922 6 6 2.9554 4.0306 -0.0009 7 6 2.6280 3.4181 1.1931 8 6 2.7738 4.1699 2.4910 9 6 1.4348 4.8098 2.8629 10 7 1.5907 5.5886 4.0987 11 6 2.1655 2.1100 1.1964 12 8 1.8422 1.5054 2.3698 13 6 2.8853 0.7992 3.0446 14 6 2.3636 0.2772 4.3848 15 6 3.4638 -0.4670 5.0967 16 1 4.4379 -0.5581 4.6392 17 6 3.2269 -1.0315 6.3321 18 7 4.1872 -1.6805 6.9536 19 14 1.5419 -0.8745 7.1232 20 1 0.6933 -2.0217 6.7124 21 1 1.6874 -0.8704 8.6010 22 1 0.9057 0.3938 6.6849 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.2577 1.5017 -2.1234 29 1 3.0832 3.8202 -2.1244 30 1 3.3156 5.0488 -0.0041 31 1 3.0779 3.4800 3.2783 32 1 3.5291 4.9475 2.3777 33 1 1.1105 5.4682 2.0570 34 1 0.6894 4.0295 3.0168 35 1 0.7194 6.0220 4.3654 36 1 1.9524 5.0140 4.8450 37 1 3.2124 -0.0397 2.4304 38 1 3.7255 1.4714 3.2188 39 1 2.0365 1.1161 4.9991 40 1 1.5234 -0.3950 4.2107 41 1 4.0204 -2.0780 7.8226 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821984707.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:02 Heat of formation + Delta-G solvation = -60.511531 kcal Electronic energy + Delta-G solvation = -20120.328544 eV Core-core repulsion = 17191.456939 eV Total energy + Delta-G solvation = -2928.871605 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.29159 -38.36691 -36.76726 -35.40003 -34.81912 -32.89397 -32.07900 -29.91032 -28.39198 -26.86975 -24.80646 -23.78492 -22.64568 -22.37740 -21.26128 -19.33370 -18.20900 -17.73553 -16.91636 -16.50286 -16.22383 -16.08101 -15.66143 -15.47433 -15.03072 -14.89374 -14.62475 -14.46398 -14.18506 -13.67660 -13.56535 -13.26388 -13.07916 -12.93960 -12.58812 -12.41477 -12.38406 -12.21787 -12.00413 -11.86786 -11.80957 -11.65773 -11.46028 -10.85747 -10.63072 -9.72882 -9.54311 -9.41496 -8.36336 -6.42880 0.27333 0.39060 1.33260 1.34353 1.47031 2.30871 2.50563 2.98622 3.05210 3.53223 3.75975 3.91505 4.12977 4.14475 4.24510 4.26784 4.29787 4.35401 4.47558 4.49769 4.55941 4.59967 4.64839 4.67185 4.83123 4.91545 5.03101 5.06784 5.07995 5.18308 5.23844 5.31563 5.36427 5.51350 5.54774 5.57895 5.69331 5.93240 6.12055 6.15911 6.51382 6.62639 6.69575 7.22355 8.79773 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.016376 B = 0.006048 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.357364 B = 4628.570229 C = 5556.943923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.084 4.084 3 C -0.112 4.112 4 C -0.112 4.112 5 C -0.118 4.118 6 C -0.112 4.112 7 C -0.112 4.112 8 C -0.072 4.072 9 C 0.079 3.921 10 N -0.854 5.854 11 C 0.074 3.926 12 O -0.346 6.346 13 C 0.100 3.900 14 C 0.001 3.999 15 C -0.536 4.536 16 H 0.037 0.963 17 C 0.016 3.984 18 N -0.943 5.943 19 Si 0.948 3.052 20 H -0.265 1.265 21 H -0.278 1.278 22 H -0.251 1.251 23 H 0.037 0.963 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.089 0.911 27 H 0.049 0.951 28 H 0.150 0.850 29 H 0.157 0.843 30 H 0.146 0.854 31 H 0.050 0.950 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.014 0.986 35 H 0.351 0.649 36 H 0.342 0.658 37 H 0.040 0.960 38 H 0.038 0.962 39 H 0.024 0.976 40 H 0.023 0.977 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.485 11.675 -16.381 21.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.122 4.122 3 C -0.113 4.113 4 C -0.130 4.130 5 C -0.136 4.136 6 C -0.130 4.130 7 C -0.113 4.113 8 C -0.110 4.110 9 C -0.052 4.052 10 N -0.384 5.384 11 C 0.030 3.970 12 O -0.264 6.264 13 C 0.026 3.974 14 C -0.036 4.036 15 C -0.574 4.574 16 H 0.055 0.945 17 C -0.182 4.182 18 N -0.583 5.583 19 Si 0.771 3.229 20 H -0.190 1.190 21 H -0.204 1.204 22 H -0.175 1.175 23 H 0.057 0.943 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.108 0.892 27 H 0.068 0.932 28 H 0.167 0.833 29 H 0.174 0.826 30 H 0.164 0.836 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.032 0.968 35 H 0.164 0.836 36 H 0.154 0.846 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.042 0.958 40 H 0.041 0.959 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.098 12.012 -16.545 21.642 hybrid contribution -0.706 -1.128 1.269 1.838 sum -7.803 10.884 -15.276 20.315 Atomic orbital electron populations 1.21634 0.93901 1.02127 1.01629 1.20487 0.97093 0.92025 1.02558 1.20453 1.00504 0.97218 0.93076 1.21243 0.98995 0.95687 0.97068 1.21491 0.98870 0.94363 0.98869 1.21220 0.99919 1.00855 0.91007 1.20295 1.00115 0.94157 0.96740 1.20412 0.98537 0.98383 0.93685 1.21579 0.95222 0.95163 0.93250 1.58780 1.35017 1.37628 1.06937 1.18809 1.00626 0.91844 0.85690 1.85995 1.36914 1.69438 1.34028 1.22440 0.88626 0.93426 0.92895 1.19362 0.96294 0.95940 0.92033 1.21121 0.97856 1.34718 1.03685 0.94510 1.25855 1.01242 0.93825 0.97295 1.70030 1.35080 1.36983 1.16157 0.85689 0.79483 0.80101 0.77599 1.19008 1.20350 1.17508 0.94342 0.91441 0.91535 0.89211 0.93179 0.83273 0.82558 0.83602 0.93164 0.89559 0.90241 0.96758 0.83617 0.84591 0.94172 0.94360 0.95765 0.95888 0.92096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 9.90 71.99 0.71 -2.59 16 2 C -0.08 -2.26 5.79 29.85 0.17 -2.09 16 3 C -0.11 -3.16 5.15 -19.77 -0.10 -3.26 16 4 C -0.11 -2.42 9.68 22.25 0.22 -2.20 16 5 C -0.12 -2.27 10.04 22.28 0.22 -2.05 16 6 C -0.11 -2.50 9.68 22.26 0.22 -2.28 16 7 C -0.11 -3.22 5.15 -19.77 -0.10 -3.32 16 8 C -0.07 -2.07 5.33 29.85 0.16 -1.91 16 9 C 0.08 2.06 6.77 86.30 0.58 2.64 16 10 N -0.85 -20.30 9.62 -186.72 -1.80 -22.10 16 11 C 0.07 2.43 5.67 22.51 0.13 2.55 16 12 O -0.35 -13.40 8.60 -92.39 -0.79 -14.20 16 13 C 0.10 4.31 5.32 71.98 0.38 4.69 16 14 C 0.00 0.06 4.41 29.85 0.13 0.19 16 15 C -0.54 -31.29 9.66 25.60 0.25 -31.04 16 16 H 0.04 2.34 7.99 -2.91 -0.02 2.32 16 17 C 0.02 0.93 5.47 84.65 0.46 1.40 16 18 N -0.94 -58.76 13.96 21.45 0.30 -58.46 16 19 Si 0.95 44.52 27.47 68.60 1.88 46.40 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.25 -11.18 6.54 99.48 0.65 -10.53 16 23 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.07 1.44 8.14 -2.38 -0.02 1.43 16 26 H 0.09 1.93 8.05 -2.39 -0.02 1.92 16 27 H 0.05 1.62 6.41 -2.38 -0.02 1.61 16 28 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 29 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 30 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 31 H 0.05 1.71 6.44 -2.38 -0.02 1.69 16 32 H 0.09 2.22 8.05 -2.39 -0.02 2.20 16 33 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 35 H 0.35 6.83 9.08 -89.69 -0.81 6.02 16 36 H 0.34 8.51 8.99 -89.70 -0.81 7.71 16 37 H 0.04 1.74 7.12 -2.39 -0.02 1.73 16 38 H 0.04 1.67 7.26 -2.39 -0.02 1.65 16 39 H 0.02 1.18 7.20 -2.39 -0.02 1.16 16 40 H 0.02 1.11 7.57 -2.39 -0.02 1.09 16 41 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -67.00 335.77 2.37 -64.64 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: -0.66 Total: 22.99 kcal Atomic # 6 Polarization: -42.70 SS G_CDS: 3.43 Total: -39.27 kcal Atomic # 7 Polarization: -79.06 SS G_CDS: -1.50 Total: -80.56 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.79 Total: -14.20 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.40 kcal Total: -67.00 2.37 -64.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821984707.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.126 kcal (2) G-P(sol) polarization free energy of solvation -67.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds