Wall clock time and date at job start Mon Mar 30 2020 06:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34507 * 125.79177 * 2 1 4 4 C 1.41385 * 106.84104 * 179.97438 * 3 2 1 5 5 C 1.50696 * 126.57985 * 179.73601 * 4 3 2 6 6 N 1.46899 * 109.47311 * 260.02309 * 5 4 3 7 7 C 1.46899 * 111.00330 * 179.97438 * 6 5 4 8 8 H 1.09008 * 110.43372 * 327.54232 * 7 6 5 9 9 C 1.54265 * 110.48685 * 90.22703 * 7 6 5 10 10 C 1.53874 * 106.59926 * 142.28947 * 9 7 6 11 11 C 1.54266 * 106.59583 * 0.02562 * 10 9 7 12 12 H 1.09004 * 110.48688 * 95.06923 * 11 10 9 13 13 C 1.50707 * 110.48595 * 217.70792 * 11 10 9 14 14 H 1.08000 * 119.99935 * 114.77118 * 13 11 10 15 15 C 1.37883 * 119.99803 * 294.78097 * 13 11 10 16 16 N 1.31512 * 119.99409 * 179.97438 * 15 13 11 17 17 Si 1.86794 * 120.00228 * 359.97438 * 15 13 11 18 18 H 1.48499 * 109.47131 * 90.00194 * 17 15 13 19 19 H 1.48505 * 109.47024 * 210.00157 * 17 15 13 20 20 H 1.48501 * 109.47197 * 329.99813 * 17 15 13 21 21 C 1.54885 * 104.20088 * 336.38868 * 11 10 9 22 22 C 1.34515 * 106.84000 * 0.02562 * 4 3 2 23 23 C 1.50697 * 125.79159 * 180.02562 * 22 4 3 24 24 O 1.34300 * 125.78413 * 179.97438 * 2 1 3 25 25 H 1.09011 * 109.47086 * 89.99600 * 1 2 3 26 26 H 1.08999 * 109.47695 * 209.99816 * 1 2 3 27 27 H 1.09000 * 109.46742 * 330.00504 * 1 2 3 28 28 H 1.08003 * 126.58477 * 359.94862 * 3 2 1 29 29 H 1.08999 * 109.47575 * 20.02586 * 5 4 3 30 30 H 1.09001 * 109.47450 * 140.02684 * 5 4 3 31 31 H 1.00907 * 110.99776 * 56.04812 * 6 5 4 32 32 H 1.08999 * 110.03455 * 261.57502 * 9 7 6 33 33 H 1.08996 * 110.03141 * 23.00400 * 9 7 6 34 34 H 1.08994 * 110.03498 * 240.71538 * 10 9 7 35 35 H 1.09008 * 110.02981 * 119.28570 * 10 9 7 36 36 H 0.97002 * 119.99607 * 180.02562 * 16 15 13 37 37 H 1.08998 * 110.75653 * 279.63504 * 21 11 10 38 38 H 1.08995 * 110.75603 * 156.25564 * 21 11 10 39 39 H 1.09004 * 109.47529 * 89.99271 * 23 22 4 40 40 H 1.09002 * 109.47437 * 209.99884 * 23 22 4 41 41 H 1.09010 * 109.46752 * 329.99687 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6319 0.0006 5 6 4.8733 1.4848 -0.0047 6 7 5.4112 1.5578 -1.3697 7 6 6.6253 2.3836 -1.4137 8 1 6.5694 3.1822 -0.6738 9 6 7.8783 1.5144 -1.1804 10 6 8.9762 2.0687 -2.1051 11 6 8.3523 3.2557 -2.8675 12 1 8.5779 4.1948 -2.3620 13 6 8.8489 3.2885 -4.2900 14 1 8.1606 3.1253 -5.1062 15 6 10.1820 3.5267 -4.5495 16 7 10.6153 3.5548 -5.7909 17 14 11.3723 3.8095 -3.1380 18 1 11.9448 2.5095 -2.7053 19 1 12.4667 4.7080 -3.5858 20 1 10.6516 4.4361 -2.0008 21 6 6.8299 2.9727 -2.8312 22 6 3.5813 -0.7123 0.0004 23 6 4.7704 -1.6381 0.0014 24 8 2.2923 -1.0895 0.0005 25 1 -0.3634 0.0001 -1.0278 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8901 0.5138 28 1 1.9667 2.1204 -0.0008 29 1 4.6268 2.4880 0.3428 30 1 5.6193 1.0442 0.6566 31 1 4.7160 1.9031 -2.0144 32 1 8.1947 1.5871 -0.1398 33 1 7.6650 0.4762 -1.4345 34 1 9.2958 1.2994 -2.8080 35 1 9.8255 2.4103 -1.5132 36 1 11.5532 3.7220 -5.9734 37 1 6.5539 2.2455 -3.5948 38 1 6.2625 3.8955 -2.9519 39 1 5.0563 -1.8614 1.0293 40 1 4.5109 -2.5635 -0.5128 41 1 5.6044 -1.1589 -0.5117 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824683497.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:35 Heat of formation + Delta-G solvation = -5.100922 kcal Electronic energy + Delta-G solvation = -19623.456905 eV Core-core repulsion = 16696.988084 eV Total energy + Delta-G solvation = -2926.468821 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.64493 -38.02487 -35.26890 -33.10185 -32.84257 -31.77589 -29.67119 -28.37534 -27.72138 -25.20277 -23.91239 -23.14546 -21.35139 -19.74877 -19.32819 -18.88152 -16.65454 -16.38637 -16.32610 -15.42420 -15.00406 -14.68357 -14.11535 -13.84056 -13.72385 -13.45354 -13.13846 -12.85922 -12.76339 -12.68349 -12.49637 -12.37711 -12.13467 -11.95315 -11.44307 -11.19267 -10.84762 -10.52762 -10.31974 -10.06817 -9.94746 -9.70511 -9.60860 -9.31684 -8.91645 -8.50219 -8.21757 -8.11347 -6.02279 -4.00343 1.67198 2.50228 2.86728 3.32771 3.40782 3.43053 4.46909 4.47424 4.66269 4.83717 4.86852 5.08858 5.20974 5.24144 5.32700 5.33469 5.40535 5.47455 5.50931 5.58428 5.66656 5.75214 5.78346 5.86960 6.06351 6.09941 6.24693 6.38201 6.45836 6.53070 6.53521 6.68768 6.75209 6.87781 7.00586 7.16644 7.21602 7.43587 7.61603 7.67766 7.85278 8.59225 9.02158 9.61105 11.11218 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.040729 B = 0.003681 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.301272 B = 7604.838275 C = 7812.623954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.027 4.027 3 C -0.202 4.202 4 C -0.175 4.175 5 C 0.130 3.870 6 N -0.677 5.677 7 C 0.077 3.923 8 H 0.041 0.959 9 C -0.108 4.108 10 C -0.129 4.129 11 C 0.014 3.986 12 H 0.029 0.971 13 C -0.507 4.507 14 H 0.073 0.927 15 C 0.069 3.931 16 N -0.905 5.905 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.295 1.295 20 H -0.265 1.265 21 C -0.105 4.105 22 C 0.008 3.992 23 C -0.074 4.074 24 O -0.179 6.179 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.143 0.857 29 H 0.034 0.966 30 H 0.076 0.924 31 H 0.341 0.659 32 H 0.042 0.958 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.038 0.962 36 H 0.262 0.738 37 H 0.071 0.929 38 H 0.049 0.951 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.478 -7.242 14.428 23.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.076 4.076 3 C -0.221 4.221 4 C -0.177 4.177 5 C 0.001 3.999 6 N -0.308 5.308 7 C -0.032 4.032 8 H 0.059 0.941 9 C -0.146 4.146 10 C -0.168 4.168 11 C -0.006 4.006 12 H 0.047 0.953 13 C -0.544 4.544 14 H 0.091 0.909 15 C -0.132 4.132 16 N -0.543 5.543 17 Si 0.708 3.292 18 H -0.203 1.203 19 H -0.221 1.221 20 H -0.190 1.190 21 C -0.143 4.143 22 C -0.042 4.042 23 C -0.131 4.131 24 O -0.076 6.076 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.104 0.896 28 H 0.161 0.839 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.159 0.841 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -16.065 -8.097 14.373 23.027 hybrid contribution 0.421 1.273 0.784 1.553 sum -15.645 -6.825 15.158 22.827 Atomic orbital electron populations 1.20249 0.85381 1.03678 1.03346 1.22262 0.93802 0.84205 1.07354 1.21452 0.92395 0.99205 1.09061 1.20102 0.95044 0.93294 1.09260 1.20230 0.91772 0.96105 0.91824 1.60628 1.07984 1.56159 1.06064 1.22534 0.89471 0.92875 0.98356 0.94059 1.22138 0.94592 0.99752 0.98122 1.22597 0.96379 1.00389 0.97407 1.19896 0.90945 0.93316 0.96423 0.95283 1.21049 0.94387 1.48256 0.90753 0.90915 1.25005 0.98289 0.94687 0.95231 1.69913 1.15524 1.50315 1.18574 0.86891 0.80770 0.78323 0.83180 1.20322 1.22143 1.19015 1.22577 0.98843 0.98956 0.93936 1.22260 0.82816 0.94401 1.04748 1.20366 0.92048 0.97631 1.03037 1.83939 1.16568 1.35041 1.72058 0.90282 0.90846 0.89607 0.83892 0.94829 0.90555 0.84136 0.93878 0.91454 0.91413 0.94359 0.92792 0.90992 0.93264 0.90640 0.90925 0.87979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.42 36.01 0.38 -0.13 16 2 C -0.03 -0.30 7.32 -35.63 -0.26 -0.56 16 3 C -0.20 -2.40 10.77 -39.70 -0.43 -2.83 16 4 C -0.18 -2.27 5.68 -104.74 -0.59 -2.86 16 5 C 0.13 1.68 5.55 -4.98 -0.03 1.65 16 6 N -0.68 -9.90 6.30 -106.25 -0.67 -10.57 16 7 C 0.08 1.28 3.19 -66.07 -0.21 1.07 16 8 H 0.04 0.68 7.82 -51.92 -0.41 0.27 16 9 C -0.11 -1.89 6.53 -25.61 -0.17 -2.05 16 10 C -0.13 -2.77 4.88 -25.61 -0.13 -2.90 16 11 C 0.01 0.32 2.28 -90.11 -0.21 0.11 16 12 H 0.03 0.70 7.06 -51.93 -0.37 0.33 16 13 C -0.51 -14.27 8.94 -34.43 -0.31 -14.58 16 14 H 0.07 2.22 8.01 -52.49 -0.42 1.80 16 15 C 0.07 2.00 5.46 -17.82 -0.10 1.90 16 16 N -0.90 -27.96 13.96 55.43 0.77 -27.18 16 17 Si 0.88 21.97 24.88 -169.99 -4.23 17.74 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 20 H -0.27 -6.35 6.41 56.52 0.36 -5.99 16 21 C -0.11 -2.07 5.65 -24.75 -0.14 -2.21 16 22 C 0.01 0.11 7.32 -35.63 -0.26 -0.15 16 23 C -0.07 -0.77 10.21 36.00 0.37 -0.40 16 24 O -0.18 -2.33 10.65 5.71 0.06 -2.27 16 25 H 0.08 0.50 8.14 -51.92 -0.42 0.07 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 29 H 0.03 0.43 8.07 -51.93 -0.42 0.01 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.34 4.94 8.41 -39.29 -0.33 4.61 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 1.15 8.04 -51.93 -0.42 0.73 16 34 H 0.07 1.55 7.83 -51.93 -0.41 1.14 16 35 H 0.04 0.81 6.05 -51.92 -0.31 0.50 16 36 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.07 1.48 8.05 -51.93 -0.42 1.07 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.10 1.15 7.87 -51.92 -0.41 0.74 16 LS Contribution 329.33 15.07 4.96 4.96 Total: -1.00 -31.05 329.33 -8.07 -39.12 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.89 Total: 2.13 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: -2.08 Total: -23.94 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.10 Total: -37.75 kcal Atomic # 8 Polarization: -2.33 SS G_CDS: 0.06 Total: -2.27 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.23 Total: 17.74 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.05 -8.07 -39.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824683497.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.018 kcal (2) G-P(sol) polarization free energy of solvation -31.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds