Wall clock time and date at job start Mon Mar 30 2020 06:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34507 * 125.79177 * 2 1 4 4 C 1.41385 * 106.84104 * 179.97438 * 3 2 1 5 5 C 1.50696 * 126.57985 * 179.73601 * 4 3 2 6 6 N 1.46899 * 109.47311 * 260.02309 * 5 4 3 7 7 C 1.46899 * 111.00330 * 179.97438 * 6 5 4 8 8 H 1.09008 * 110.43372 * 327.54232 * 7 6 5 9 9 C 1.54265 * 110.48685 * 90.22703 * 7 6 5 10 10 C 1.53874 * 106.59926 * 142.28947 * 9 7 6 11 11 C 1.54266 * 106.59583 * 0.02562 * 10 9 7 12 12 H 1.09004 * 110.48688 * 95.06923 * 11 10 9 13 13 C 1.50707 * 110.48595 * 217.70792 * 11 10 9 14 14 H 1.08000 * 119.99935 * 114.77118 * 13 11 10 15 15 C 1.37883 * 119.99803 * 294.78097 * 13 11 10 16 16 N 1.31512 * 119.99409 * 179.97438 * 15 13 11 17 17 Si 1.86794 * 120.00228 * 359.97438 * 15 13 11 18 18 H 1.48499 * 109.47131 * 90.00194 * 17 15 13 19 19 H 1.48505 * 109.47024 * 210.00157 * 17 15 13 20 20 H 1.48501 * 109.47197 * 329.99813 * 17 15 13 21 21 C 1.54885 * 104.20088 * 336.38868 * 11 10 9 22 22 C 1.34515 * 106.84000 * 0.02562 * 4 3 2 23 23 C 1.50697 * 125.79159 * 180.02562 * 22 4 3 24 24 O 1.34300 * 125.78413 * 179.97438 * 2 1 3 25 25 H 1.09011 * 109.47086 * 89.99600 * 1 2 3 26 26 H 1.08999 * 109.47695 * 209.99816 * 1 2 3 27 27 H 1.09000 * 109.46742 * 330.00504 * 1 2 3 28 28 H 1.08003 * 126.58477 * 359.94862 * 3 2 1 29 29 H 1.08999 * 109.47575 * 20.02586 * 5 4 3 30 30 H 1.09001 * 109.47450 * 140.02684 * 5 4 3 31 31 H 1.00907 * 110.99776 * 56.04812 * 6 5 4 32 32 H 1.08999 * 110.03455 * 261.57502 * 9 7 6 33 33 H 1.08996 * 110.03141 * 23.00400 * 9 7 6 34 34 H 1.08994 * 110.03498 * 240.71538 * 10 9 7 35 35 H 1.09008 * 110.02981 * 119.28570 * 10 9 7 36 36 H 0.97002 * 119.99607 * 180.02562 * 16 15 13 37 37 H 1.08998 * 110.75653 * 279.63504 * 21 11 10 38 38 H 1.08995 * 110.75603 * 156.25564 * 21 11 10 39 39 H 1.09004 * 109.47529 * 89.99271 * 23 22 4 40 40 H 1.09002 * 109.47437 * 209.99884 * 23 22 4 41 41 H 1.09010 * 109.46752 * 329.99687 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6319 0.0006 5 6 4.8733 1.4848 -0.0047 6 7 5.4112 1.5578 -1.3697 7 6 6.6253 2.3836 -1.4137 8 1 6.5694 3.1822 -0.6738 9 6 7.8783 1.5144 -1.1804 10 6 8.9762 2.0687 -2.1051 11 6 8.3523 3.2557 -2.8675 12 1 8.5779 4.1948 -2.3620 13 6 8.8489 3.2885 -4.2900 14 1 8.1606 3.1253 -5.1062 15 6 10.1820 3.5267 -4.5495 16 7 10.6153 3.5548 -5.7909 17 14 11.3723 3.8095 -3.1380 18 1 11.9448 2.5095 -2.7053 19 1 12.4667 4.7080 -3.5858 20 1 10.6516 4.4361 -2.0008 21 6 6.8299 2.9727 -2.8312 22 6 3.5813 -0.7123 0.0004 23 6 4.7704 -1.6381 0.0014 24 8 2.2923 -1.0895 0.0005 25 1 -0.3634 0.0001 -1.0278 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8901 0.5138 28 1 1.9667 2.1204 -0.0008 29 1 4.6268 2.4880 0.3428 30 1 5.6193 1.0442 0.6566 31 1 4.7160 1.9031 -2.0144 32 1 8.1947 1.5871 -0.1398 33 1 7.6650 0.4762 -1.4345 34 1 9.2958 1.2994 -2.8080 35 1 9.8255 2.4103 -1.5132 36 1 11.5532 3.7220 -5.9734 37 1 6.5539 2.2455 -3.5948 38 1 6.2625 3.8955 -2.9519 39 1 5.0563 -1.8614 1.0293 40 1 4.5109 -2.5635 -0.5128 41 1 5.6044 -1.1589 -0.5117 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824683497.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:34 Heat of formation + Delta-G solvation = -24.536680 kcal Electronic energy + Delta-G solvation = -19624.299702 eV Core-core repulsion = 16696.988084 eV Total energy + Delta-G solvation = -2927.311618 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.53122 -39.50534 -36.53983 -34.59964 -33.84148 -33.28841 -30.46505 -30.05181 -29.12243 -26.44026 -25.12078 -24.61975 -22.24424 -21.21668 -20.87385 -20.07696 -18.64737 -17.29388 -17.25346 -16.83283 -16.65493 -16.05319 -15.40643 -15.02538 -14.78869 -14.69627 -14.27613 -14.09864 -13.93338 -13.68262 -13.52227 -13.38895 -13.30853 -13.15101 -12.84932 -12.66035 -12.27543 -12.13427 -11.87606 -11.72258 -11.56802 -11.50297 -11.14279 -10.91997 -10.69066 -10.58520 -9.31825 -9.04465 -8.27129 -6.29916 0.79543 1.34841 1.36949 1.47689 1.59548 2.05997 2.36553 3.08322 3.37180 3.81012 3.86032 3.96508 4.00846 4.08185 4.25458 4.46361 4.50915 4.51814 4.62446 4.68606 4.71811 4.74017 4.79768 4.84913 4.86890 4.96932 4.99554 5.05140 5.08932 5.15902 5.22330 5.28932 5.42524 5.46129 5.50977 5.66753 5.67626 5.83564 6.21467 6.29915 6.36265 6.48469 6.76862 7.35242 8.90139 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.040729 B = 0.003681 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.301272 B = 7604.838275 C = 7812.623954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.031 4.031 3 C -0.219 4.219 4 C -0.190 4.190 5 C 0.135 3.865 6 N -0.678 5.678 7 C 0.092 3.908 8 H 0.056 0.944 9 C -0.100 4.100 10 C -0.128 4.128 11 C 0.006 3.994 12 H 0.030 0.970 13 C -0.512 4.512 14 H 0.029 0.971 15 C 0.008 3.992 16 N -0.955 5.955 17 Si 0.944 3.056 18 H -0.265 1.265 19 H -0.295 1.295 20 H -0.243 1.243 21 C -0.101 4.101 22 C -0.008 4.008 23 C -0.072 4.072 24 O -0.193 6.193 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.104 0.896 28 H 0.157 0.843 29 H 0.040 0.960 30 H 0.082 0.918 31 H 0.341 0.659 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.044 0.956 36 H 0.264 0.736 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.317 -7.431 17.373 25.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.081 4.081 3 C -0.238 4.238 4 C -0.191 4.191 5 C 0.007 3.993 6 N -0.309 5.309 7 C -0.017 4.017 8 H 0.074 0.926 9 C -0.138 4.138 10 C -0.166 4.166 11 C -0.013 4.013 12 H 0.048 0.952 13 C -0.550 4.550 14 H 0.047 0.953 15 C -0.188 4.188 16 N -0.596 5.596 17 Si 0.769 3.231 18 H -0.190 1.190 19 H -0.222 1.222 20 H -0.167 1.167 21 C -0.139 4.139 22 C -0.058 4.058 23 C -0.128 4.128 24 O -0.091 6.091 25 H 0.107 0.893 26 H 0.101 0.899 27 H 0.123 0.877 28 H 0.175 0.825 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.159 0.841 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.933 -8.294 17.336 25.613 hybrid contribution 0.567 1.319 -0.237 1.455 sum -16.366 -6.975 17.099 24.675 Atomic orbital electron populations 1.20435 0.82673 1.05094 1.04386 1.23029 0.95415 0.83659 1.05953 1.21714 0.92228 1.00164 1.09698 1.20217 0.95461 0.93518 1.09919 1.20206 0.91942 0.96549 0.90606 1.60575 1.07540 1.55500 1.07311 1.22300 0.90190 0.93139 0.96113 0.92634 1.22074 0.93383 0.99766 0.98582 1.22458 0.97852 0.98790 0.97500 1.19890 0.93618 0.94312 0.93484 0.95233 1.21376 0.93907 1.47296 0.92443 0.95275 1.25914 1.00378 0.94581 0.97920 1.70072 1.16106 1.52272 1.21167 0.85851 0.78211 0.78797 0.80240 1.19036 1.22199 1.16661 1.22451 0.96387 0.99150 0.95889 1.22685 0.83309 0.94964 1.04883 1.20401 0.90941 0.97396 1.04104 1.83946 1.16914 1.35958 1.72310 0.89305 0.89913 0.87715 0.82538 0.94150 0.89958 0.84068 0.91146 0.91070 0.93773 0.93777 0.92701 0.92793 0.92570 0.88944 0.90265 0.88817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.42 71.24 0.74 -0.09 16 2 C -0.03 -0.65 7.32 24.83 0.18 -0.47 16 3 C -0.22 -4.81 10.77 22.19 0.24 -4.58 16 4 C -0.19 -4.56 5.68 -19.94 -0.11 -4.67 16 5 C 0.14 3.16 5.55 85.56 0.48 3.64 16 6 N -0.68 -18.39 6.30 -490.07 -3.09 -21.48 16 7 C 0.09 2.83 3.19 45.98 0.15 2.98 16 8 H 0.06 1.60 7.82 -2.38 -0.02 1.58 16 9 C -0.10 -3.20 6.53 31.32 0.20 -3.00 16 10 C -0.13 -5.25 4.88 31.32 0.15 -5.10 16 11 C 0.01 0.29 2.28 -10.46 -0.02 0.26 16 12 H 0.03 1.37 7.06 -2.39 -0.02 1.35 16 13 C -0.51 -29.70 8.94 25.60 0.23 -29.47 16 14 H 0.03 1.88 8.01 -2.91 -0.02 1.85 16 15 C 0.01 0.49 5.46 84.66 0.46 0.95 16 16 N -0.96 -60.98 13.96 21.45 0.30 -60.68 16 17 Si 0.94 45.05 24.88 68.60 1.71 46.76 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 20 H -0.24 -10.64 6.41 99.48 0.64 -10.01 16 21 C -0.10 -3.89 5.65 31.88 0.18 -3.71 16 22 C -0.01 -0.19 7.32 24.83 0.18 -0.01 16 23 C -0.07 -1.38 10.21 71.24 0.73 -0.65 16 24 O -0.19 -4.79 10.65 -2.50 -0.03 -4.82 16 25 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 26 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 29 H 0.04 0.90 8.07 -2.39 -0.02 0.88 16 30 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.34 9.36 8.41 -89.69 -0.75 8.61 16 32 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.07 2.24 8.04 -2.39 -0.02 2.23 16 34 H 0.04 1.99 7.83 -2.39 -0.02 1.98 16 35 H 0.04 1.74 6.05 -2.38 -0.01 1.73 16 36 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 37 H 0.05 2.26 8.05 -2.39 -0.02 2.24 16 38 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 39 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.09 1.95 7.87 -2.38 -0.02 1.93 16 Total: -1.00 -68.45 329.33 2.86 -65.59 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.18 Total: 18.55 kcal Atomic # 6 Polarization: -47.71 SS G_CDS: 3.79 Total: -43.92 kcal Atomic # 7 Polarization: -79.37 SS G_CDS: -2.79 Total: -82.16 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.03 Total: -4.82 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.71 Total: 46.76 kcal Total: -68.45 2.86 -65.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824683497.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.051 kcal (2) G-P(sol) polarization free energy of solvation -68.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds