Wall clock time and date at job start Mon Mar 30 2020 06:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 111.00139 * 2 1 4 4 C 1.50697 * 109.47435 * 185.12660 * 3 2 1 5 5 C 1.38157 * 120.03038 * 256.25231 * 4 3 2 6 6 C 1.38246 * 120.05589 * 179.97438 * 5 4 3 7 7 C 1.38284 * 120.11067 * 0.02562 * 6 5 4 8 8 C 1.38119 * 120.05843 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.02789 * 179.72019 * 8 7 6 10 10 C 1.38720 * 120.02618 * 76.25144 * 4 3 2 11 11 O 1.35903 * 120.05302 * 0.04826 * 10 4 3 12 12 C 1.42899 * 117.00076 * 107.04011 * 11 10 4 13 13 H 1.09004 * 109.47076 * 42.03628 * 12 11 10 14 14 C 1.53002 * 109.46802 * 282.03909 * 12 11 10 15 15 C 1.53000 * 109.47021 * 162.04009 * 12 11 10 16 16 C 1.50694 * 109.47164 * 296.41007 * 15 12 11 17 17 H 1.08001 * 120.00103 * 0.53467 * 16 15 12 18 18 C 1.37875 * 120.00077 * 180.52520 * 16 15 12 19 19 N 1.31512 * 119.99933 * 5.14892 * 18 16 15 20 20 Si 1.86801 * 120.00197 * 185.14666 * 18 16 15 21 21 H 1.48499 * 109.47050 * 5.00630 * 20 18 16 22 22 H 1.48501 * 109.47047 * 125.00487 * 20 18 16 23 23 H 1.48503 * 109.47221 * 245.00601 * 20 18 16 24 24 H 1.08999 * 109.47294 * 295.10842 * 1 2 3 25 25 H 1.09007 * 109.46882 * 55.11151 * 1 2 3 26 26 H 1.09001 * 109.47219 * 175.10199 * 1 2 3 27 27 H 1.00895 * 110.99629 * 123.95411 * 2 1 3 28 28 H 1.09008 * 109.47216 * 65.12489 * 3 2 1 29 29 H 1.09006 * 109.47053 * 305.13163 * 3 2 1 30 30 H 1.08003 * 119.97567 * 359.97438 * 5 4 3 31 31 H 1.08001 * 119.94311 * 180.02562 * 6 5 4 32 32 H 1.08010 * 119.97238 * 179.97438 * 7 6 5 33 33 H 1.08998 * 109.46990 * 97.58616 * 9 8 7 34 34 H 1.08998 * 109.47516 * 217.58553 * 9 8 7 35 35 H 1.08999 * 109.47485 * 337.58366 * 9 8 7 36 36 H 1.09008 * 109.46731 * 184.57367 * 14 12 11 37 37 H 1.08991 * 109.47577 * 304.57286 * 14 12 11 38 38 H 1.09003 * 109.47286 * 64.57873 * 14 12 11 39 39 H 1.08997 * 109.47299 * 56.41616 * 15 12 11 40 40 H 1.09007 * 109.46982 * 176.41248 * 15 12 11 41 41 H 0.97006 * 120.00416 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.4966 1.3333 -0.1270 5 6 4.2902 1.5626 0.9805 6 6 5.6673 1.5272 0.8647 7 6 6.2541 1.2629 -0.3593 8 6 5.4652 1.0340 -1.4696 9 6 6.1053 0.7522 -2.8045 10 6 4.0828 1.0679 -1.3559 11 8 3.3043 0.8429 -2.4469 12 6 3.2482 1.8796 -3.4288 13 1 4.2471 2.2875 -3.5840 14 6 2.3134 2.9901 -2.9451 15 6 2.7209 1.3066 -4.7458 16 6 3.6873 0.2746 -5.2672 17 1 4.5832 0.0435 -4.7102 18 6 3.4275 -0.3749 -6.4554 19 7 2.3908 -0.0232 -7.1841 20 14 4.5483 -1.7545 -7.0302 21 1 5.5624 -2.0371 -5.9829 22 1 3.7415 -2.9758 -7.2805 23 1 5.2318 -1.3471 -8.2840 24 1 -0.3634 0.4361 0.9305 25 1 -0.3633 0.5878 -0.8430 26 1 -0.3634 -1.0239 -0.0877 27 1 1.8305 -0.5261 0.7813 28 1 1.7221 1.8656 0.9324 29 1 1.5736 1.9225 -0.8405 30 1 3.8344 1.7697 1.9374 31 1 6.2860 1.7063 1.7317 32 1 7.3303 1.2362 -0.4472 33 1 6.1327 -0.3241 -2.9743 34 1 5.5251 1.2299 -3.5939 35 1 7.1213 1.1470 -2.8108 36 1 2.2068 3.7416 -3.7275 37 1 1.3363 2.5669 -2.7124 38 1 2.7312 3.4530 -2.0511 39 1 1.7494 0.8423 -4.5770 40 1 2.6179 2.1095 -5.4759 41 1 2.2078 -0.4804 -8.0198 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829189104.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:02 Heat of formation + Delta-G solvation = -23.303296 kcal Electronic energy + Delta-G solvation = -20652.919743 eV Core-core repulsion = 17725.661608 eV Total energy + Delta-G solvation = -2927.258135 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.92429 -37.08213 -35.87066 -33.31823 -32.41716 -31.48062 -29.98261 -27.47271 -26.46832 -26.27655 -23.42843 -23.31151 -21.48517 -20.47521 -20.10950 -17.23498 -16.43190 -16.03382 -15.53982 -14.92861 -14.74757 -14.42303 -14.13368 -13.71327 -13.40729 -13.22699 -12.85996 -12.57783 -12.31241 -11.94898 -11.89830 -11.79048 -11.73265 -11.54830 -11.32761 -11.24497 -11.06647 -10.88148 -10.64306 -10.52326 -10.27246 -9.30974 -9.11399 -8.78265 -8.43642 -8.30620 -8.18483 -7.92725 -5.93961 -3.92756 1.55951 1.61817 3.36325 3.44249 3.48832 3.82189 4.46591 4.52913 4.64328 4.97497 5.07161 5.21148 5.36490 5.43741 5.49206 5.53274 5.66105 5.67629 5.73408 5.80449 5.85732 5.94049 6.00309 6.04382 6.14470 6.24788 6.28451 6.34419 6.63878 6.66274 6.69181 6.83143 6.86709 6.95109 7.14395 7.16432 7.54596 7.63460 7.72522 8.05388 8.39470 8.54608 9.11349 9.69572 11.18018 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017610 B = 0.006774 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.618099 B = 4132.619459 C = 4904.695588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.677 5.677 3 C 0.106 3.894 4 C -0.111 4.111 5 C -0.112 4.112 6 C -0.142 4.142 7 C -0.108 4.108 8 C -0.117 4.117 9 C -0.125 4.125 10 C 0.142 3.858 11 O -0.297 6.297 12 C 0.094 3.906 13 H 0.053 0.947 14 C -0.177 4.177 15 C 0.027 3.973 16 C -0.509 4.509 17 H 0.066 0.934 18 C 0.056 3.944 19 N -0.898 5.898 20 Si 0.887 3.113 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.286 1.286 24 H 0.013 0.987 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.336 0.664 28 H 0.027 0.973 29 H 0.088 0.912 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.042 0.958 39 H 0.026 0.974 40 H 0.035 0.965 41 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.250 4.532 15.694 16.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.307 5.307 3 C -0.023 4.023 4 C -0.112 4.112 5 C -0.130 4.130 6 C -0.160 4.160 7 C -0.127 4.127 8 C -0.117 4.117 9 C -0.181 4.181 10 C 0.097 3.903 11 O -0.213 6.213 12 C 0.040 3.960 13 H 0.071 0.929 14 C -0.235 4.235 15 C -0.009 4.009 16 C -0.547 4.547 17 H 0.084 0.916 18 C -0.144 4.144 19 N -0.538 5.538 20 Si 0.715 3.285 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.212 1.212 24 H 0.032 0.968 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.153 0.847 28 H 0.045 0.955 29 H 0.106 0.894 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.091 0.909 34 H 0.112 0.888 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.044 0.956 40 H 0.053 0.947 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.067 4.266 14.784 15.526 hybrid contribution 0.494 -0.412 0.636 0.905 sum 2.561 3.854 15.421 16.100 Atomic orbital electron populations 1.22170 0.87832 1.02141 0.99630 1.60229 1.07228 1.13587 1.49658 1.20812 0.90870 0.90263 1.00333 1.19939 0.95376 1.02325 0.93523 1.20808 0.93619 1.01338 0.97259 1.20921 0.94609 1.03117 0.97343 1.20909 0.99264 1.00289 0.92200 1.20454 0.93464 1.00951 0.96840 1.21043 0.99748 1.03006 0.94263 1.18550 0.88687 0.94973 0.88111 1.86298 1.65488 1.41108 1.28416 1.22742 0.97522 0.86352 0.89409 0.92947 1.22501 1.00984 0.99411 1.00593 1.19223 0.97366 0.96622 0.87724 1.21314 1.07190 1.20924 1.05300 0.91611 1.24971 0.95490 0.97252 0.96700 1.69969 1.28469 1.41554 1.13843 0.86607 0.80816 0.82511 0.78520 1.19654 1.21135 1.21235 0.96834 0.91482 0.91458 0.84677 0.95503 0.89392 0.86653 0.86561 0.86362 0.90850 0.88786 0.92596 0.91781 0.92162 0.93928 0.95613 0.94710 0.93196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.71 60.07 0.64 1.04 16 2 N -0.68 -10.03 6.82 -122.42 -0.83 -10.86 16 3 C 0.11 1.54 5.43 -4.98 -0.03 1.52 16 4 C -0.11 -1.75 5.45 -104.47 -0.57 -2.32 16 5 C -0.11 -1.49 9.66 -39.61 -0.38 -1.88 16 6 C -0.14 -1.83 10.04 -39.56 -0.40 -2.23 16 7 C -0.11 -1.56 9.67 -39.61 -0.38 -1.94 16 8 C -0.12 -2.02 5.76 -104.48 -0.60 -2.62 16 9 C -0.12 -2.20 8.89 36.00 0.32 -1.88 16 10 C 0.14 2.64 5.45 -39.22 -0.21 2.42 16 11 O -0.30 -6.38 8.40 -19.43 -0.16 -6.54 16 12 C 0.09 1.99 2.12 -26.73 -0.06 1.93 16 13 H 0.05 1.09 5.75 -51.93 -0.30 0.79 16 14 C -0.18 -3.12 8.10 37.16 0.30 -2.82 16 15 C 0.03 0.70 4.70 -27.89 -0.13 0.57 16 16 C -0.51 -14.17 8.71 -34.44 -0.30 -14.47 16 17 H 0.07 1.77 5.44 -52.49 -0.29 1.48 16 18 C 0.06 1.61 5.45 -17.82 -0.10 1.52 16 19 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 20 Si 0.89 21.96 29.54 -169.99 -5.02 16.93 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 25 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.34 4.42 8.86 -39.29 -0.35 4.07 16 28 H 0.03 0.33 7.96 -51.92 -0.41 -0.08 16 29 H 0.09 1.40 5.36 -51.93 -0.28 1.12 16 30 H 0.12 1.24 8.01 -52.48 -0.42 0.82 16 31 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.12 1.43 8.05 -52.48 -0.42 1.00 16 33 H 0.07 1.36 8.13 -51.93 -0.42 0.94 16 34 H 0.09 1.87 3.49 -51.93 -0.18 1.69 16 35 H 0.06 0.82 8.03 -51.93 -0.42 0.40 16 36 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 37 H 0.06 1.05 7.19 -51.93 -0.37 0.68 16 38 H 0.04 0.68 7.92 -51.93 -0.41 0.26 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 328.91 15.07 4.96 4.96 Total: -1.00 -30.77 328.91 -8.59 -39.35 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -6.36 Total: 3.54 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -1.90 Total: -21.15 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: -0.10 Total: -37.08 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.16 Total: -6.54 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.77 -8.59 -39.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829189104.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.048 kcal (2) G-P(sol) polarization free energy of solvation -30.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds