Wall clock time and date at job start Mon Mar 30 2020 06:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 111.00139 * 2 1 4 4 C 1.50697 * 109.47435 * 185.12660 * 3 2 1 5 5 C 1.38157 * 120.03038 * 256.25231 * 4 3 2 6 6 C 1.38246 * 120.05589 * 179.97438 * 5 4 3 7 7 C 1.38284 * 120.11067 * 0.02562 * 6 5 4 8 8 C 1.38119 * 120.05843 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.02789 * 179.72019 * 8 7 6 10 10 C 1.38720 * 120.02618 * 76.25144 * 4 3 2 11 11 O 1.35903 * 120.05302 * 0.04826 * 10 4 3 12 12 C 1.42899 * 117.00076 * 107.04011 * 11 10 4 13 13 H 1.09004 * 109.47076 * 42.03628 * 12 11 10 14 14 C 1.53002 * 109.46802 * 282.03909 * 12 11 10 15 15 C 1.53000 * 109.47021 * 162.04009 * 12 11 10 16 16 C 1.50694 * 109.47164 * 296.41007 * 15 12 11 17 17 H 1.08001 * 120.00103 * 0.53467 * 16 15 12 18 18 C 1.37875 * 120.00077 * 180.52520 * 16 15 12 19 19 N 1.31512 * 119.99933 * 5.14892 * 18 16 15 20 20 Si 1.86801 * 120.00197 * 185.14666 * 18 16 15 21 21 H 1.48499 * 109.47050 * 5.00630 * 20 18 16 22 22 H 1.48501 * 109.47047 * 125.00487 * 20 18 16 23 23 H 1.48503 * 109.47221 * 245.00601 * 20 18 16 24 24 H 1.08999 * 109.47294 * 295.10842 * 1 2 3 25 25 H 1.09007 * 109.46882 * 55.11151 * 1 2 3 26 26 H 1.09001 * 109.47219 * 175.10199 * 1 2 3 27 27 H 1.00895 * 110.99629 * 123.95411 * 2 1 3 28 28 H 1.09008 * 109.47216 * 65.12489 * 3 2 1 29 29 H 1.09006 * 109.47053 * 305.13163 * 3 2 1 30 30 H 1.08003 * 119.97567 * 359.97438 * 5 4 3 31 31 H 1.08001 * 119.94311 * 180.02562 * 6 5 4 32 32 H 1.08010 * 119.97238 * 179.97438 * 7 6 5 33 33 H 1.08998 * 109.46990 * 97.58616 * 9 8 7 34 34 H 1.08998 * 109.47516 * 217.58553 * 9 8 7 35 35 H 1.08999 * 109.47485 * 337.58366 * 9 8 7 36 36 H 1.09008 * 109.46731 * 184.57367 * 14 12 11 37 37 H 1.08991 * 109.47577 * 304.57286 * 14 12 11 38 38 H 1.09003 * 109.47286 * 64.57873 * 14 12 11 39 39 H 1.08997 * 109.47299 * 56.41616 * 15 12 11 40 40 H 1.09007 * 109.46982 * 176.41248 * 15 12 11 41 41 H 0.97006 * 120.00416 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.4966 1.3333 -0.1270 5 6 4.2902 1.5626 0.9805 6 6 5.6673 1.5272 0.8647 7 6 6.2541 1.2629 -0.3593 8 6 5.4652 1.0340 -1.4696 9 6 6.1053 0.7522 -2.8045 10 6 4.0828 1.0679 -1.3559 11 8 3.3043 0.8429 -2.4469 12 6 3.2482 1.8796 -3.4288 13 1 4.2471 2.2875 -3.5840 14 6 2.3134 2.9901 -2.9451 15 6 2.7209 1.3066 -4.7458 16 6 3.6873 0.2746 -5.2672 17 1 4.5832 0.0435 -4.7102 18 6 3.4275 -0.3749 -6.4554 19 7 2.3908 -0.0232 -7.1841 20 14 4.5483 -1.7545 -7.0302 21 1 5.5624 -2.0371 -5.9829 22 1 3.7415 -2.9758 -7.2805 23 1 5.2318 -1.3471 -8.2840 24 1 -0.3634 0.4361 0.9305 25 1 -0.3633 0.5878 -0.8430 26 1 -0.3634 -1.0239 -0.0877 27 1 1.8305 -0.5261 0.7813 28 1 1.7221 1.8656 0.9324 29 1 1.5736 1.9225 -0.8405 30 1 3.8344 1.7697 1.9374 31 1 6.2860 1.7063 1.7317 32 1 7.3303 1.2362 -0.4472 33 1 6.1327 -0.3241 -2.9743 34 1 5.5251 1.2299 -3.5939 35 1 7.1213 1.1470 -2.8108 36 1 2.2068 3.7416 -3.7275 37 1 1.3363 2.5669 -2.7124 38 1 2.7312 3.4530 -2.0511 39 1 1.7494 0.8423 -4.5770 40 1 2.6179 2.1095 -5.4759 41 1 2.2078 -0.4804 -8.0198 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829189104.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:01 Heat of formation + Delta-G solvation = -42.491101 kcal Electronic energy + Delta-G solvation = -20653.751789 eV Core-core repulsion = 17725.661608 eV Total energy + Delta-G solvation = -2928.090181 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.20793 -38.48585 -36.96859 -35.31922 -33.60910 -33.27331 -31.19727 -29.34800 -27.75998 -27.39789 -25.26869 -24.51545 -22.86535 -21.78744 -21.56303 -18.59985 -18.51113 -17.23854 -16.84014 -16.61639 -16.05013 -15.81586 -15.30766 -15.13930 -14.76616 -14.54975 -14.36896 -13.83758 -13.79107 -13.42970 -13.40131 -13.31600 -13.10712 -13.00189 -12.82834 -12.69865 -12.64122 -12.40293 -12.20968 -11.99977 -11.97590 -11.19629 -10.96809 -10.53922 -10.43171 -9.56747 -9.23687 -9.18564 -8.15047 -6.20302 0.41872 0.44512 1.38140 1.40496 1.52563 2.43852 2.63803 3.11430 3.23492 3.55237 3.84306 3.97867 4.13378 4.17736 4.31178 4.36146 4.42636 4.47590 4.53172 4.57796 4.62543 4.64722 4.78398 4.82409 4.85949 4.92088 5.04364 5.10106 5.13428 5.20704 5.38475 5.48836 5.55007 5.58789 5.63053 5.77636 5.86648 6.04805 6.11895 6.29469 6.55414 6.91540 7.03012 7.45955 8.97761 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017610 B = 0.006774 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.618099 B = 4132.619459 C = 4904.695588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.702 5.702 3 C 0.108 3.892 4 C -0.116 4.116 5 C -0.105 4.105 6 C -0.129 4.129 7 C -0.108 4.108 8 C -0.140 4.140 9 C -0.120 4.120 10 C 0.104 3.896 11 O -0.322 6.322 12 C 0.104 3.896 13 H 0.052 0.948 14 C -0.165 4.165 15 C 0.033 3.967 16 C -0.520 4.520 17 H 0.071 0.929 18 C 0.000 4.000 19 N -0.936 5.936 20 Si 0.952 3.048 21 H -0.264 1.264 22 H -0.284 1.284 23 H -0.276 1.276 24 H 0.038 0.962 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.345 0.655 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.149 0.851 31 H 0.155 0.845 32 H 0.143 0.857 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.062 0.938 39 H -0.009 1.009 40 H 0.016 0.984 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.883 4.794 18.584 19.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.334 5.334 3 C -0.021 4.021 4 C -0.117 4.117 5 C -0.123 4.123 6 C -0.147 4.147 7 C -0.126 4.126 8 C -0.140 4.140 9 C -0.176 4.176 10 C 0.059 3.941 11 O -0.239 6.239 12 C 0.049 3.951 13 H 0.069 0.931 14 C -0.222 4.222 15 C -0.004 4.004 16 C -0.558 4.558 17 H 0.089 0.911 18 C -0.197 4.197 19 N -0.577 5.577 20 Si 0.778 3.222 21 H -0.188 1.188 22 H -0.210 1.210 23 H -0.201 1.201 24 H 0.056 0.944 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.163 0.837 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.167 0.833 31 H 0.173 0.827 32 H 0.161 0.839 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.010 0.990 40 H 0.034 0.966 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.707 4.533 17.692 18.636 hybrid contribution 0.010 -0.478 -0.145 0.500 sum 3.717 4.055 17.547 18.389 Atomic orbital electron populations 1.22143 0.86850 1.02327 1.00163 1.60173 1.08442 1.14145 1.50608 1.20771 0.90262 0.90211 1.00812 1.20129 0.96222 1.02122 0.93239 1.21205 0.93866 0.99612 0.97660 1.21391 0.94868 1.00579 0.97859 1.21212 1.00353 0.99259 0.91794 1.20540 0.93433 1.02553 0.97483 1.20928 1.00936 1.01548 0.94236 1.18887 0.89171 0.98047 0.88009 1.86226 1.66544 1.41620 1.29494 1.22374 0.97815 0.86910 0.87984 0.93064 1.22356 0.99998 0.98357 1.01519 1.19039 0.95517 0.95566 0.90237 1.21724 1.07606 1.21183 1.05326 0.91111 1.25840 0.97073 0.99734 0.97025 1.70094 1.30295 1.42931 1.14378 0.85580 0.79022 0.79207 0.78394 1.18800 1.21000 1.20125 0.94369 0.93100 0.91114 0.83713 0.92756 0.91347 0.83302 0.82705 0.83933 0.92743 0.91649 0.89899 0.91100 0.92587 0.91869 0.99047 0.96582 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 10.71 127.69 1.37 2.21 16 2 N -0.70 -20.20 6.82 -541.22 -3.69 -23.88 16 3 C 0.11 2.99 5.43 85.56 0.46 3.45 16 4 C -0.12 -3.45 5.45 -19.77 -0.11 -3.56 16 5 C -0.11 -2.38 9.66 22.25 0.22 -2.16 16 6 C -0.13 -2.73 10.04 22.28 0.22 -2.51 16 7 C -0.11 -2.76 9.67 22.25 0.22 -2.54 16 8 C -0.14 -4.69 5.76 -19.77 -0.11 -4.81 16 9 C -0.12 -4.26 8.89 71.24 0.63 -3.63 16 10 C 0.10 3.80 5.45 22.51 0.12 3.92 16 11 O -0.32 -14.27 8.40 -92.46 -0.78 -15.05 16 12 C 0.10 4.56 2.12 30.60 0.06 4.62 16 13 H 0.05 2.23 5.75 -2.39 -0.01 2.21 16 14 C -0.17 -5.91 8.10 71.98 0.58 -5.32 16 15 C 0.03 1.81 4.70 29.85 0.14 1.95 16 16 C -0.52 -30.13 8.71 25.60 0.22 -29.90 16 17 H 0.07 3.95 5.44 -2.91 -0.02 3.93 16 18 C 0.00 0.01 5.45 84.65 0.46 0.47 16 19 N -0.94 -58.07 13.29 21.45 0.29 -57.79 16 20 Si 0.95 45.97 29.54 68.60 2.03 48.00 16 21 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.05 1.38 8.09 -2.38 -0.02 1.36 16 26 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.34 8.54 8.86 -89.70 -0.79 7.75 16 28 H 0.05 1.18 7.96 -2.38 -0.02 1.16 16 29 H 0.07 2.15 5.36 -2.38 -0.01 2.14 16 30 H 0.15 2.37 8.01 -2.91 -0.02 2.35 16 31 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 32 H 0.14 2.87 8.05 -2.91 -0.02 2.85 16 33 H 0.05 2.07 8.13 -2.39 -0.02 2.05 16 34 H 0.06 2.68 3.49 -2.39 -0.01 2.67 16 35 H 0.08 2.36 8.03 -2.39 -0.02 2.34 16 36 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 37 H 0.06 2.03 7.19 -2.39 -0.02 2.01 16 38 H 0.06 1.98 7.92 -2.39 -0.02 1.96 16 39 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 40 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 Total: -1.00 -69.21 328.91 2.56 -66.64 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.22 Total: 19.90 kcal Atomic # 6 Polarization: -42.31 SS G_CDS: 4.49 Total: -37.81 kcal Atomic # 7 Polarization: -78.27 SS G_CDS: -3.40 Total: -81.67 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.78 Total: -15.05 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -69.21 2.56 -66.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829189104.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.152 kcal (2) G-P(sol) polarization free energy of solvation -69.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds