Wall clock time and date at job start Mon Mar 30 2020 06:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46900 * 111.00237 * 2 1 4 4 C 1.50702 * 109.47377 * 183.17950 * 3 2 1 5 5 C 1.38166 * 120.03073 * 264.98015 * 4 3 2 6 6 C 1.38237 * 120.05742 * 179.97438 * 5 4 3 7 7 C 1.38292 * 120.11449 * 359.97438 * 6 5 4 8 8 C 1.38124 * 120.05192 * 359.76511 * 7 6 5 9 9 C 1.50699 * 120.02915 * 180.27613 * 8 7 6 10 10 C 1.38710 * 120.02573 * 84.95196 * 4 3 2 11 11 O 1.35897 * 120.05582 * 0.02696 * 10 4 3 12 12 C 1.42900 * 117.00278 * 257.16066 * 11 10 4 13 13 H 1.09005 * 109.46915 * 320.15753 * 12 11 10 14 14 C 1.52997 * 109.47097 * 80.15609 * 12 11 10 15 15 C 1.53001 * 109.47491 * 200.15954 * 12 11 10 16 16 C 1.50702 * 109.47038 * 62.46849 * 15 12 11 17 17 H 1.07993 * 120.00136 * 355.03099 * 16 15 12 18 18 C 1.37873 * 119.99583 * 175.29549 * 16 15 12 19 19 N 1.31514 * 120.00422 * 5.09200 * 18 16 15 20 20 Si 1.86802 * 120.00057 * 185.08845 * 18 16 15 21 21 H 1.48498 * 109.47032 * 5.01247 * 20 18 16 22 22 H 1.48503 * 109.47018 * 125.01124 * 20 18 16 23 23 H 1.48499 * 109.47211 * 245.01326 * 20 18 16 24 24 H 1.08997 * 109.47443 * 64.69959 * 1 2 3 25 25 H 1.09006 * 109.46977 * 184.69967 * 1 2 3 26 26 H 1.09003 * 109.47253 * 304.69516 * 1 2 3 27 27 H 1.00901 * 111.00021 * 123.95612 * 2 1 3 28 28 H 1.09004 * 109.46693 * 63.18650 * 3 2 1 29 29 H 1.08995 * 109.46907 * 303.18324 * 3 2 1 30 30 H 1.08004 * 119.96904 * 359.95189 * 5 4 3 31 31 H 1.07999 * 119.94455 * 179.97438 * 6 5 4 32 32 H 1.07992 * 119.97869 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.47397 * 264.86733 * 9 8 7 34 34 H 1.08996 * 109.46939 * 24.87118 * 9 8 7 35 35 H 1.09004 * 109.47050 * 144.86669 * 9 8 7 36 36 H 1.09005 * 109.46676 * 170.17189 * 14 12 11 37 37 H 1.09000 * 109.47234 * 290.16690 * 14 12 11 38 38 H 1.08999 * 109.47272 * 50.17087 * 14 12 11 39 39 H 1.09000 * 109.46946 * 302.47556 * 15 12 11 40 40 H 1.08992 * 109.47018 * 182.47547 * 15 12 11 41 41 H 0.97004 * 120.00451 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.4999 1.3320 -0.0788 5 6 4.2547 1.3948 1.0767 6 6 5.6347 1.3582 1.0051 7 6 6.2634 1.2580 -0.2226 8 6 5.5132 1.1895 -1.3803 9 6 6.1987 1.0741 -2.7174 10 6 4.1280 1.2320 -1.3115 11 8 3.3878 1.1700 -2.4495 12 6 3.2431 -0.1137 -3.0603 13 1 4.1896 -0.6516 -3.0040 14 6 2.1606 -0.9083 -2.3270 15 6 2.8424 0.0612 -4.5265 16 6 3.9364 0.7910 -5.2626 17 1 4.7912 1.1697 -4.7222 18 6 3.8431 0.9798 -6.6251 19 7 2.7555 0.6128 -7.2670 20 14 5.2617 1.7570 -7.5596 21 1 6.4063 1.9666 -6.6371 22 1 5.6763 0.8584 -8.6669 23 1 4.8300 3.0636 -8.1177 24 1 -0.3634 0.4392 -0.9290 25 1 -0.3633 -1.0243 0.0842 26 1 -0.3634 0.5850 0.8450 27 1 1.8305 -0.5262 0.7814 28 1 1.6928 1.8767 0.9172 29 1 1.6006 1.9121 -0.8600 30 1 3.7661 1.4730 2.0368 31 1 6.2230 1.4078 1.9095 32 1 7.3416 1.2292 -0.2759 33 1 6.3059 2.0655 -3.1575 34 1 7.1839 0.6276 -2.5832 35 1 5.6019 0.4457 -3.3786 36 1 1.9268 -1.8107 -2.8921 37 1 2.5206 -1.1835 -1.3357 38 1 1.2634 -0.2970 -2.2310 39 1 1.9188 0.6371 -4.5845 40 1 2.6893 -0.9178 -4.9806 41 1 2.6897 0.7460 -8.2256 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829189105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:04 Heat of formation + Delta-G solvation = -13.898465 kcal Electronic energy + Delta-G solvation = -20794.974724 eV Core-core repulsion = 17868.124413 eV Total energy + Delta-G solvation = -2926.850311 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.91005 -36.98385 -36.03875 -33.29649 -32.37089 -31.44444 -29.83866 -27.26916 -26.48332 -26.25639 -23.54924 -23.12246 -21.50870 -20.44783 -19.98909 -17.21710 -16.40008 -16.02072 -15.56432 -14.97774 -14.70118 -14.40690 -14.17412 -13.83709 -13.32711 -13.08978 -12.77916 -12.46686 -12.22047 -11.95601 -11.86763 -11.77681 -11.59774 -11.34079 -11.22876 -11.15628 -11.00335 -10.84330 -10.62824 -10.46299 -10.15584 -9.23583 -9.01497 -8.77842 -8.46422 -8.27595 -8.05881 -7.91138 -5.92754 -3.91963 1.55449 1.61841 3.35582 3.43240 3.46767 3.81596 4.43907 4.52683 4.69448 4.97785 5.05091 5.22108 5.34640 5.43917 5.46603 5.48781 5.66126 5.74001 5.80753 5.95460 5.99591 6.06747 6.13389 6.20380 6.27373 6.33767 6.45902 6.66129 6.70105 6.72267 6.82864 6.94714 7.04870 7.06323 7.16591 7.29767 7.44781 7.67151 7.80162 8.07723 8.43544 8.58877 9.13401 9.70369 11.18992 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.019174 B = 0.006924 C = 0.005367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.930165 B = 4042.717674 C = 5216.105601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.675 5.675 3 C 0.105 3.895 4 C -0.109 4.109 5 C -0.112 4.112 6 C -0.140 4.140 7 C -0.110 4.110 8 C -0.111 4.111 9 C -0.127 4.127 10 C 0.139 3.861 11 O -0.314 6.314 12 C 0.102 3.898 13 H 0.044 0.956 14 C -0.162 4.162 15 C 0.025 3.975 16 C -0.513 4.513 17 H 0.069 0.931 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.886 3.114 21 H -0.272 1.272 22 H -0.286 1.286 23 H -0.285 1.285 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.016 0.984 27 H 0.334 0.666 28 H 0.030 0.970 29 H 0.089 0.911 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.099 0.901 36 H 0.042 0.958 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.023 0.977 40 H 0.034 0.966 41 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.190 -0.885 16.955 17.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.304 5.304 3 C -0.023 4.023 4 C -0.110 4.110 5 C -0.131 4.131 6 C -0.158 4.158 7 C -0.128 4.128 8 C -0.111 4.111 9 C -0.183 4.183 10 C 0.093 3.907 11 O -0.231 6.231 12 C 0.047 3.953 13 H 0.062 0.938 14 C -0.219 4.219 15 C -0.012 4.012 16 C -0.551 4.551 17 H 0.087 0.913 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.714 3.286 21 H -0.197 1.197 22 H -0.212 1.212 23 H -0.212 1.212 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.035 0.965 27 H 0.151 0.849 28 H 0.048 0.952 29 H 0.107 0.893 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.041 0.959 40 H 0.052 0.948 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.036 -0.822 15.984 16.038 hybrid contribution 0.680 0.638 0.392 1.012 sum 1.715 -0.184 16.376 16.466 Atomic orbital electron populations 1.22202 0.87966 1.01362 1.00654 1.60924 1.07263 1.13607 1.48640 1.20730 0.90677 0.90040 1.00844 1.19930 0.95348 1.03412 0.92297 1.20789 0.93834 1.01549 0.96930 1.20926 0.94435 1.03135 0.97331 1.20915 0.99341 1.00721 0.91837 1.20457 0.93565 1.00768 0.96359 1.21076 0.99738 1.03539 0.93949 1.18537 0.88970 0.96385 0.86790 1.86119 1.69581 1.31804 1.35586 1.22690 0.96702 0.80855 0.95037 0.93824 1.22613 1.00235 0.99170 0.99929 1.19252 0.97612 0.97740 0.86555 1.21448 1.06088 1.35274 0.92279 0.91292 1.24998 0.95580 0.95965 0.97966 1.69983 1.26440 1.48695 1.08650 0.86634 0.83020 0.79001 0.79970 1.19666 1.21199 1.21156 0.91284 0.91609 0.96541 0.84872 0.95160 0.89279 0.86719 0.86595 0.86378 0.91075 0.92654 0.88251 0.93952 0.91579 0.91740 0.95915 0.94787 0.93233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.05 60.06 0.60 0.91 16 2 N -0.67 -8.54 2.39 -122.42 -0.29 -8.84 16 3 C 0.11 1.47 5.34 -4.97 -0.03 1.44 16 4 C -0.11 -1.68 5.43 -104.47 -0.57 -2.25 16 5 C -0.11 -1.47 9.68 -39.61 -0.38 -1.85 16 6 C -0.14 -1.80 10.04 -39.56 -0.40 -2.19 16 7 C -0.11 -1.58 9.68 -39.60 -0.38 -1.96 16 8 C -0.11 -1.93 5.77 -104.47 -0.60 -2.53 16 9 C -0.13 -2.29 8.91 36.01 0.32 -1.97 16 10 C 0.14 2.56 5.50 -39.21 -0.22 2.34 16 11 O -0.31 -6.75 8.07 -19.42 -0.16 -6.91 16 12 C 0.10 2.19 2.10 -26.73 -0.06 2.13 16 13 H 0.04 0.95 6.33 -51.93 -0.33 0.62 16 14 C -0.16 -2.98 7.68 37.16 0.29 -2.70 16 15 C 0.03 0.66 4.69 -27.88 -0.13 0.53 16 16 C -0.51 -14.34 8.61 -34.44 -0.30 -14.63 16 17 H 0.07 1.85 4.94 -52.49 -0.26 1.59 16 18 C 0.06 1.59 5.45 -17.82 -0.10 1.49 16 19 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 20 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H 0.07 0.84 7.76 -51.93 -0.40 0.44 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.02 0.16 8.13 -51.93 -0.42 -0.26 16 27 H 0.33 3.73 8.84 -39.29 -0.35 3.38 16 28 H 0.03 0.36 8.05 -51.93 -0.42 -0.05 16 29 H 0.09 1.44 7.69 -51.93 -0.40 1.04 16 30 H 0.11 1.20 8.06 -52.48 -0.42 0.78 16 31 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.05 0.84 8.05 -51.93 -0.42 0.42 16 35 H 0.10 2.06 3.37 -51.93 -0.17 1.88 16 36 H 0.04 0.76 8.12 -51.93 -0.42 0.34 16 37 H 0.07 1.12 6.29 -51.93 -0.33 0.79 16 38 H 0.06 1.19 6.19 -51.93 -0.32 0.87 16 39 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 322.39 15.07 4.86 4.86 Total: -1.00 -30.36 322.39 -8.16 -38.51 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.34 Total: 3.16 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -1.95 Total: -21.26 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.44 Total: -35.18 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.16 Total: -6.91 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.36 -8.16 -38.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829189105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.616 kcal (2) G-P(sol) polarization free energy of solvation -30.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds