Wall clock time and date at job start Mon Mar 30 2020 06:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46900 * 111.00237 * 2 1 4 4 C 1.50702 * 109.47377 * 183.17950 * 3 2 1 5 5 C 1.38166 * 120.03073 * 264.98015 * 4 3 2 6 6 C 1.38237 * 120.05742 * 179.97438 * 5 4 3 7 7 C 1.38292 * 120.11449 * 359.97438 * 6 5 4 8 8 C 1.38124 * 120.05192 * 359.76511 * 7 6 5 9 9 C 1.50699 * 120.02915 * 180.27613 * 8 7 6 10 10 C 1.38710 * 120.02573 * 84.95196 * 4 3 2 11 11 O 1.35897 * 120.05582 * 0.02696 * 10 4 3 12 12 C 1.42900 * 117.00278 * 257.16066 * 11 10 4 13 13 H 1.09005 * 109.46915 * 320.15753 * 12 11 10 14 14 C 1.52997 * 109.47097 * 80.15609 * 12 11 10 15 15 C 1.53001 * 109.47491 * 200.15954 * 12 11 10 16 16 C 1.50702 * 109.47038 * 62.46849 * 15 12 11 17 17 H 1.07993 * 120.00136 * 355.03099 * 16 15 12 18 18 C 1.37873 * 119.99583 * 175.29549 * 16 15 12 19 19 N 1.31514 * 120.00422 * 5.09200 * 18 16 15 20 20 Si 1.86802 * 120.00057 * 185.08845 * 18 16 15 21 21 H 1.48498 * 109.47032 * 5.01247 * 20 18 16 22 22 H 1.48503 * 109.47018 * 125.01124 * 20 18 16 23 23 H 1.48499 * 109.47211 * 245.01326 * 20 18 16 24 24 H 1.08997 * 109.47443 * 64.69959 * 1 2 3 25 25 H 1.09006 * 109.46977 * 184.69967 * 1 2 3 26 26 H 1.09003 * 109.47253 * 304.69516 * 1 2 3 27 27 H 1.00901 * 111.00021 * 123.95612 * 2 1 3 28 28 H 1.09004 * 109.46693 * 63.18650 * 3 2 1 29 29 H 1.08995 * 109.46907 * 303.18324 * 3 2 1 30 30 H 1.08004 * 119.96904 * 359.95189 * 5 4 3 31 31 H 1.07999 * 119.94455 * 179.97438 * 6 5 4 32 32 H 1.07992 * 119.97869 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.47397 * 264.86733 * 9 8 7 34 34 H 1.08996 * 109.46939 * 24.87118 * 9 8 7 35 35 H 1.09004 * 109.47050 * 144.86669 * 9 8 7 36 36 H 1.09005 * 109.46676 * 170.17189 * 14 12 11 37 37 H 1.09000 * 109.47234 * 290.16690 * 14 12 11 38 38 H 1.08999 * 109.47272 * 50.17087 * 14 12 11 39 39 H 1.09000 * 109.46946 * 302.47556 * 15 12 11 40 40 H 1.08992 * 109.47018 * 182.47547 * 15 12 11 41 41 H 0.97004 * 120.00451 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.4999 1.3320 -0.0788 5 6 4.2547 1.3948 1.0767 6 6 5.6347 1.3582 1.0051 7 6 6.2634 1.2580 -0.2226 8 6 5.5132 1.1895 -1.3803 9 6 6.1987 1.0741 -2.7174 10 6 4.1280 1.2320 -1.3115 11 8 3.3878 1.1700 -2.4495 12 6 3.2431 -0.1137 -3.0603 13 1 4.1896 -0.6516 -3.0040 14 6 2.1606 -0.9083 -2.3270 15 6 2.8424 0.0612 -4.5265 16 6 3.9364 0.7910 -5.2626 17 1 4.7912 1.1697 -4.7222 18 6 3.8431 0.9798 -6.6251 19 7 2.7555 0.6128 -7.2670 20 14 5.2617 1.7570 -7.5596 21 1 6.4063 1.9666 -6.6371 22 1 5.6763 0.8584 -8.6669 23 1 4.8300 3.0636 -8.1177 24 1 -0.3634 0.4392 -0.9290 25 1 -0.3633 -1.0243 0.0842 26 1 -0.3634 0.5850 0.8450 27 1 1.8305 -0.5262 0.7814 28 1 1.6928 1.8767 0.9172 29 1 1.6006 1.9121 -0.8600 30 1 3.7661 1.4730 2.0368 31 1 6.2230 1.4078 1.9095 32 1 7.3416 1.2292 -0.2759 33 1 6.3059 2.0655 -3.1575 34 1 7.1839 0.6276 -2.5832 35 1 5.6019 0.4457 -3.3786 36 1 1.9268 -1.8107 -2.8921 37 1 2.5206 -1.1835 -1.3357 38 1 1.2634 -0.2970 -2.2310 39 1 1.9188 0.6371 -4.5845 40 1 2.6893 -0.9178 -4.9806 41 1 2.6897 0.7460 -8.2256 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829189105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:04 Heat of formation + Delta-G solvation = -30.968093 kcal Electronic energy + Delta-G solvation = -20795.714919 eV Core-core repulsion = 17868.124413 eV Total energy + Delta-G solvation = -2927.590505 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.19730 -38.41569 -37.07139 -35.31975 -33.56272 -33.23302 -31.10812 -29.15815 -27.75021 -27.38673 -25.18533 -24.47585 -22.87117 -21.78353 -21.47107 -18.57923 -18.51014 -17.19266 -16.85264 -16.55634 -16.12863 -15.65717 -15.39326 -15.18888 -14.63914 -14.54282 -14.35485 -13.75395 -13.71235 -13.41337 -13.31048 -13.23030 -13.03552 -12.87100 -12.77011 -12.62205 -12.47267 -12.38667 -12.13076 -12.04675 -11.84662 -11.12960 -10.90549 -10.58110 -10.36640 -9.58183 -9.22360 -9.04613 -8.14543 -6.21011 0.40359 0.45294 1.38693 1.39273 1.52081 2.43550 2.63941 3.13791 3.25481 3.56690 3.86223 3.98240 4.16529 4.33632 4.37649 4.49916 4.53086 4.57051 4.64086 4.66396 4.67188 4.73187 4.80801 4.84879 4.91872 5.09450 5.11763 5.17946 5.34121 5.42823 5.50495 5.56690 5.59369 5.62095 5.72504 5.81101 5.89109 6.02985 6.10416 6.31800 6.57607 6.92367 7.03759 7.45706 8.98030 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.019174 B = 0.006924 C = 0.005367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.930165 B = 4042.717674 C = 5216.105601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.687 5.687 3 C 0.112 3.888 4 C -0.112 4.112 5 C -0.104 4.104 6 C -0.127 4.127 7 C -0.110 4.110 8 C -0.134 4.134 9 C -0.123 4.123 10 C 0.096 3.904 11 O -0.337 6.337 12 C 0.114 3.886 13 H 0.039 0.961 14 C -0.145 4.145 15 C 0.031 3.969 16 C -0.525 4.525 17 H 0.077 0.923 18 C -0.002 4.002 19 N -0.937 5.937 20 Si 0.954 3.046 21 H -0.260 1.260 22 H -0.278 1.278 23 H -0.283 1.283 24 H 0.047 0.953 25 H 0.079 0.921 26 H 0.033 0.967 27 H 0.347 0.653 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.151 0.849 31 H 0.155 0.845 32 H 0.142 0.858 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.039 0.961 37 H 0.086 0.914 38 H 0.060 0.940 39 H -0.012 1.012 40 H 0.012 0.988 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.850 -0.665 20.065 20.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.319 5.319 3 C -0.017 4.017 4 C -0.113 4.113 5 C -0.123 4.123 6 C -0.144 4.144 7 C -0.129 4.129 8 C -0.134 4.134 9 C -0.180 4.180 10 C 0.052 3.948 11 O -0.255 6.255 12 C 0.059 3.941 13 H 0.057 0.943 14 C -0.202 4.202 15 C -0.006 4.006 16 C -0.563 4.563 17 H 0.095 0.905 18 C -0.199 4.199 19 N -0.578 5.578 20 Si 0.779 3.221 21 H -0.184 1.184 22 H -0.203 1.203 23 H -0.209 1.209 24 H 0.066 0.934 25 H 0.098 0.902 26 H 0.052 0.948 27 H 0.165 0.835 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.168 0.832 31 H 0.173 0.827 32 H 0.160 0.840 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.006 0.994 40 H 0.030 0.970 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.702 -0.605 19.118 19.318 hybrid contribution 0.169 0.589 -0.448 0.759 sum 2.871 -0.016 18.670 18.890 Atomic orbital electron populations 1.22169 0.87006 1.02366 1.00253 1.60760 1.08281 1.13188 1.49638 1.20599 0.89916 0.90643 1.00527 1.20125 0.96222 1.02974 0.91986 1.21188 0.94113 0.99625 0.97333 1.21403 0.94659 1.00348 0.98023 1.21206 1.00484 0.99810 0.91350 1.20526 0.93476 1.02492 0.96950 1.20954 1.00640 1.02144 0.94222 1.18897 0.89523 0.99693 0.86714 1.86054 1.70552 1.31373 1.37524 1.22296 0.97187 0.81831 0.92752 0.94347 1.22484 0.99000 0.98330 1.00401 1.19087 0.95791 0.95671 0.90076 1.21874 1.06643 1.34967 0.92834 0.90541 1.25904 0.98227 0.96669 0.99091 1.70118 1.28536 1.50146 1.09007 0.85562 0.79921 0.77983 0.78657 1.18362 1.20345 1.20900 0.93397 0.90232 0.94805 0.83491 0.92607 0.92621 0.83181 0.82689 0.84028 0.92553 0.90123 0.91506 0.94165 0.89568 0.92152 0.99366 0.96957 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.05 127.69 1.28 1.93 16 2 N -0.69 -16.36 2.39 -541.24 -1.29 -17.65 16 3 C 0.11 2.96 5.34 85.56 0.46 3.42 16 4 C -0.11 -3.26 5.43 -19.77 -0.11 -3.37 16 5 C -0.10 -2.29 9.68 22.25 0.22 -2.07 16 6 C -0.13 -2.64 10.04 22.28 0.22 -2.41 16 7 C -0.11 -2.83 9.68 22.26 0.22 -2.61 16 8 C -0.13 -4.55 5.77 -19.77 -0.11 -4.66 16 9 C -0.12 -4.48 8.91 71.24 0.63 -3.84 16 10 C 0.10 3.54 5.50 22.51 0.12 3.67 16 11 O -0.34 -15.13 8.07 -92.39 -0.75 -15.88 16 12 C 0.11 5.15 2.10 30.59 0.06 5.21 16 13 H 0.04 1.75 6.33 -2.38 -0.02 1.73 16 14 C -0.14 -5.47 7.68 71.98 0.55 -4.91 16 15 C 0.03 1.70 4.69 29.85 0.14 1.84 16 16 C -0.53 -30.67 8.61 25.60 0.22 -30.45 16 17 H 0.08 4.28 4.94 -2.91 -0.01 4.26 16 18 C 0.00 -0.13 5.45 84.65 0.46 0.33 16 19 N -0.94 -58.66 13.29 21.45 0.29 -58.38 16 20 Si 0.95 45.80 29.54 68.60 2.03 47.83 16 21 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 23 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 24 H 0.05 1.19 7.76 -2.39 -0.02 1.17 16 25 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 26 H 0.03 0.58 8.13 -2.39 -0.02 0.56 16 27 H 0.35 6.77 8.84 -89.69 -0.79 5.98 16 28 H 0.06 1.18 8.05 -2.38 -0.02 1.16 16 29 H 0.06 1.85 7.69 -2.39 -0.02 1.83 16 30 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 31 H 0.16 2.09 8.06 -2.91 -0.02 2.06 16 32 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 33 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.08 2.39 8.05 -2.39 -0.02 2.37 16 35 H 0.07 2.86 3.37 -2.38 -0.01 2.85 16 36 H 0.04 1.49 8.12 -2.38 -0.02 1.47 16 37 H 0.09 2.88 6.29 -2.39 -0.02 2.87 16 38 H 0.06 2.31 6.19 -2.39 -0.01 2.30 16 39 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 40 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -69.21 322.39 4.87 -64.34 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.23 Total: 17.67 kcal Atomic # 6 Polarization: -42.30 SS G_CDS: 4.37 Total: -37.93 kcal Atomic # 7 Polarization: -75.02 SS G_CDS: -1.01 Total: -76.03 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.75 Total: -15.88 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -69.21 4.87 -64.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829189105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.369 kcal (2) G-P(sol) polarization free energy of solvation -69.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds