Wall clock time and date at job start Mon Mar 30 2020 07:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53003 * 109.46819 * 103.54676 * 3 2 1 5 5 H 1.09002 * 109.49908 * 54.99881 * 4 3 2 6 6 C 1.53039 * 109.49634 * 294.93411 * 4 3 2 7 7 C 1.53049 * 109.53353 * 178.65292 * 6 4 3 8 8 C 1.53187 * 109.31497 * 61.36666 * 7 6 4 9 9 N 1.46931 * 108.77274 * 305.36469 * 8 7 6 10 10 C 1.34781 * 120.62766 * 233.60345 * 9 8 7 11 11 O 1.21281 * 119.99997 * 179.97438 * 10 9 8 12 12 C 1.50699 * 119.99906 * 0.02562 * 10 9 8 13 13 C 1.53002 * 109.46948 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46910 * 179.97438 * 13 12 10 15 15 C 1.50703 * 109.47035 * 179.97438 * 14 13 12 16 16 H 1.08010 * 119.99802 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00149 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00115 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99967 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47367 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47084 * 119.99910 * 19 17 15 22 22 H 1.48496 * 109.47165 * 239.99691 * 19 17 15 23 23 C 1.46925 * 118.74018 * 53.60848 * 9 8 7 24 24 H 4.44655 * 5.63382 * 180.02562 * 4 1 2 25 25 H 1.09000 * 109.47074 * 343.55165 * 3 2 1 26 26 H 1.08996 * 109.46697 * 223.54536 * 3 2 1 27 27 H 1.08998 * 109.46238 * 298.67145 * 6 4 3 28 28 H 1.08993 * 109.46127 * 58.63642 * 6 4 3 29 29 H 1.09006 * 109.49335 * 181.31393 * 7 6 4 30 30 H 1.08993 * 109.49810 * 301.41219 * 7 6 4 31 31 H 1.09002 * 109.58909 * 65.14881 * 8 7 6 32 32 H 1.08996 * 109.59133 * 185.57767 * 8 7 6 33 33 H 1.08997 * 109.47359 * 299.99315 * 12 10 9 34 34 H 1.09000 * 109.47383 * 59.99653 * 12 10 9 35 35 H 1.09005 * 109.47047 * 299.99779 * 13 12 10 36 36 H 1.09000 * 109.46969 * 59.99881 * 13 12 10 37 37 H 1.08997 * 109.47470 * 299.99841 * 14 13 12 38 38 H 1.09000 * 109.47310 * 60.00202 * 14 13 12 39 39 H 0.96998 * 119.99817 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.58300 * 186.60199 * 23 9 8 41 41 H 1.08998 * 109.58651 * 66.18140 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1558 0.3388 -1.4024 5 1 2.7210 1.2832 -1.7297 6 6 2.7532 -0.7729 -2.3741 7 6 3.2335 -0.4194 -3.7836 8 6 4.7612 -0.3062 -3.7847 9 7 5.1648 0.6563 -2.7505 10 6 5.9622 1.6989 -3.0566 11 8 6.2880 2.4868 -2.1940 12 6 6.4481 1.8862 -4.4707 13 6 7.3291 3.1349 -4.5461 14 6 7.8229 3.3247 -5.9817 15 6 8.6901 4.5550 -6.0561 16 1 8.8705 5.1430 -5.1682 17 6 9.2522 4.9306 -7.2577 18 7 9.0320 4.2150 -8.3389 19 14 10.3265 6.4561 -7.3500 20 1 10.4174 7.0796 -6.0053 21 1 11.6858 6.0769 -7.8121 22 1 9.7308 7.4239 -8.3057 23 6 4.6827 0.4606 -1.3765 24 1 -1.0501 0.0002 0.0001 25 1 3.0098 -0.9848 0.2910 26 1 3.0090 0.7457 0.7080 27 1 3.2085 -1.7121 -2.0602 28 1 1.6683 -0.8782 -2.3759 29 1 2.9261 -1.2004 -4.4792 30 1 2.7980 0.5321 -4.0884 31 1 5.2000 -1.2803 -3.5685 32 1 5.1012 0.0415 -4.7602 33 1 7.0270 1.0141 -4.7746 34 1 5.5930 2.0046 -5.1361 35 1 6.7499 4.0070 -4.2424 36 1 8.1843 3.0169 -3.8806 37 1 8.4021 2.4527 -6.2850 38 1 6.9679 3.4426 -6.6475 39 1 9.4278 4.4791 -9.1842 40 1 4.9708 1.3144 -0.7631 41 1 5.1151 -0.4509 -0.9639 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847095926.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:35 Heat of formation + Delta-G solvation = -34.396500 kcal Electronic energy + Delta-G solvation = -19322.342827 eV Core-core repulsion = 16394.603655 eV Total energy + Delta-G solvation = -2927.739172 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.29226 -38.93384 -36.15130 -35.89148 -34.06713 -33.27525 -32.43046 -29.95969 -27.95520 -26.69850 -25.23680 -23.40485 -22.38087 -21.30803 -19.93716 -18.88565 -18.48883 -17.96764 -16.85847 -16.78565 -16.47043 -15.86591 -15.58411 -15.31991 -14.89859 -14.69147 -14.39599 -14.12291 -13.89809 -13.80763 -13.59227 -13.27922 -13.09855 -12.64458 -12.52462 -12.38584 -12.18571 -11.93433 -11.78955 -11.57025 -11.55975 -11.45192 -11.22179 -11.07717 -10.91376 -10.67046 -10.54852 -9.62756 -8.20635 -6.30445 1.39217 1.39470 1.53414 1.61184 1.84433 1.95383 2.09024 2.41631 3.12313 3.45621 3.60457 3.78511 3.89654 4.00645 4.13302 4.19324 4.23747 4.31707 4.40173 4.56078 4.58631 4.74359 4.78822 4.83318 4.89930 4.91331 4.95610 5.07540 5.12611 5.15240 5.18649 5.20325 5.26142 5.44312 5.53072 5.60931 5.74967 5.86250 6.26662 6.38476 6.74138 6.84899 7.18838 7.38247 8.91165 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.041059 B = 0.003136 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.779428 B = 8927.775662 C = 9197.521034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.208 4.208 3 C -0.006 4.006 4 C -0.088 4.088 5 H 0.054 0.946 6 C -0.109 4.109 7 C -0.132 4.132 8 C 0.098 3.902 9 N -0.612 5.612 10 C 0.514 3.486 11 O -0.586 6.586 12 C -0.128 4.128 13 C -0.082 4.082 14 C 0.027 3.973 15 C -0.547 4.547 16 H 0.050 0.950 17 C 0.003 3.997 18 N -0.929 5.929 19 Si 0.962 3.038 20 H -0.269 1.269 21 H -0.274 1.274 22 H -0.275 1.275 23 C 0.113 3.887 24 H 0.239 0.761 25 H 0.108 0.892 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.099 0.901 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.037 0.963 36 H 0.040 0.960 37 H 0.002 0.998 38 H 0.001 0.999 39 H 0.265 0.735 40 H 0.070 0.930 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.027 -15.439 13.041 25.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.208 4.208 3 C -0.043 4.043 4 C -0.108 4.108 5 H 0.072 0.928 6 C -0.146 4.146 7 C -0.170 4.170 8 C -0.024 4.024 9 N -0.345 5.345 10 C 0.304 3.696 11 O -0.466 6.466 12 C -0.167 4.167 13 C -0.120 4.120 14 C -0.010 4.010 15 C -0.585 4.585 16 H 0.068 0.932 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.786 3.214 20 H -0.193 1.193 21 H -0.200 1.200 22 H -0.200 1.200 23 C -0.009 4.009 24 H 0.256 0.744 25 H 0.126 0.874 26 H 0.109 0.891 27 H 0.101 0.899 28 H 0.084 0.916 29 H 0.118 0.882 30 H 0.071 0.929 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.126 0.874 34 H 0.122 0.878 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.021 0.979 38 H 0.019 0.981 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.806 -15.050 13.310 25.563 hybrid contribution 0.370 1.049 -0.295 1.151 sum -15.436 -14.001 13.016 24.570 Atomic orbital electron populations 1.25640 0.96905 1.00722 0.99989 1.23473 0.95258 1.00947 1.01154 1.18749 0.84490 1.04350 0.96687 1.21387 0.94279 0.99653 0.95447 0.92756 1.21575 1.01243 0.98015 0.93816 1.21922 0.94411 1.02653 0.98063 1.22071 0.95924 0.93010 0.91395 1.48224 1.48708 1.26589 1.10932 1.21103 0.77589 0.79804 0.91129 1.90642 1.59088 1.45456 1.51464 1.21689 1.01470 1.00750 0.92839 1.21166 0.97574 0.95720 0.97526 1.19011 0.94852 0.95369 0.91765 1.21716 1.30565 1.11389 0.94816 0.93175 1.25902 0.97958 1.00285 0.95332 1.70070 1.45928 1.40738 1.00199 0.85448 0.78519 0.79117 0.78280 1.19306 1.19973 1.20029 1.21679 0.93514 1.02851 0.82879 0.74416 0.87360 0.89130 0.89884 0.91585 0.88241 0.92877 0.88935 0.88927 0.87403 0.87794 0.94363 0.94114 0.97934 0.98102 0.92631 0.91105 0.89091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.24 19.25 74.32 1.43 -1.81 16 2 C -0.21 -3.53 12.29 31.13 0.38 -3.15 16 3 C -0.01 -0.08 5.19 28.79 0.15 0.07 16 4 C -0.09 -1.48 2.31 -10.72 -0.02 -1.51 16 5 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 6 C -0.11 -1.46 5.00 30.62 0.15 -1.31 16 7 C -0.13 -1.87 6.08 30.67 0.19 -1.68 16 8 C 0.10 1.62 6.34 86.36 0.55 2.17 16 9 N -0.61 -14.67 2.97 -818.90 -2.43 -17.11 16 10 C 0.51 17.11 7.70 87.66 0.67 17.79 16 11 O -0.59 -24.60 15.39 -3.03 -0.05 -24.65 16 12 C -0.13 -4.31 4.05 29.85 0.12 -4.19 16 13 C -0.08 -3.69 4.44 30.60 0.14 -3.55 16 14 C 0.03 1.45 4.97 29.85 0.15 1.60 16 15 C -0.55 -32.56 9.11 25.60 0.23 -32.33 16 16 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 17 C 0.00 0.18 5.46 84.65 0.46 0.65 16 18 N -0.93 -56.63 13.29 21.45 0.28 -56.35 16 19 Si 0.96 45.55 29.54 68.60 2.03 47.58 16 20 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 21 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 22 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 23 C 0.11 2.29 5.72 86.36 0.49 2.78 16 24 H 0.24 1.93 7.80 -4.41 -0.03 1.90 16 25 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 0.92 7.34 -2.39 -0.02 0.90 16 29 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.09 1.56 5.93 -2.39 -0.01 1.55 16 33 H 0.11 3.19 7.94 -2.39 -0.02 3.17 16 34 H 0.10 3.15 7.69 -2.39 -0.02 3.13 16 35 H 0.04 1.81 8.10 -2.38 -0.02 1.79 16 36 H 0.04 1.92 8.10 -2.39 -0.02 1.90 16 37 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 38 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 39 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 40 H 0.07 1.79 7.01 -2.38 -0.02 1.77 16 41 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -74.12 337.82 5.90 -68.22 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: 0.97 Total: 6.77 kcal Atomic # 6 Polarization: -29.56 SS G_CDS: 5.09 Total: -24.46 kcal Atomic # 7 Polarization: -71.30 SS G_CDS: -2.15 Total: -73.45 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.05 Total: -24.65 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -74.12 5.90 -68.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847095926.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.824 kcal (2) G-P(sol) polarization free energy of solvation -74.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds