Wall clock time and date at job start Mon Mar 30 2020 07:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47270 * 121.03029 * 3 2 1 5 5 H 1.08998 * 109.49694 * 305.06591 * 4 3 2 6 6 C 1.53042 * 109.52551 * 65.14683 * 4 3 2 7 7 C 1.53040 * 109.53871 * 181.33389 * 6 4 3 8 8 C 1.53620 * 109.24368 * 298.50818 * 7 6 4 9 9 N 1.46921 * 108.54214 * 54.85383 * 8 7 6 10 10 C 1.34779 * 120.62879 * 126.36914 * 9 8 7 11 11 O 1.21286 * 120.00040 * 179.72216 * 10 9 8 12 12 C 1.50698 * 120.00201 * 359.72485 * 10 9 8 13 13 C 1.52992 * 109.47592 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47482 * 179.97438 * 13 12 10 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47432 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46890 * 120.00210 * 19 17 15 22 22 H 1.48501 * 109.47062 * 240.00257 * 19 17 15 23 23 C 1.46923 * 118.74197 * 306.09814 * 9 8 7 24 24 H 4.44646 * 5.63388 * 180.02562 * 4 1 2 25 25 H 1.08999 * 109.47392 * 1.02828 * 3 2 1 26 26 H 1.09006 * 109.46914 * 241.02638 * 3 2 1 27 27 H 1.09008 * 109.45680 * 301.35356 * 6 4 3 28 28 H 1.08996 * 109.46444 * 61.30973 * 6 4 3 29 29 H 1.09002 * 109.49699 * 58.58756 * 7 6 4 30 30 H 1.09005 * 109.49696 * 178.64346 * 7 6 4 31 31 H 1.09005 * 109.73786 * 295.11903 * 8 7 6 32 32 H 1.08995 * 109.66568 * 174.54975 * 8 7 6 33 33 H 1.09002 * 109.47210 * 59.99599 * 12 10 9 34 34 H 1.09001 * 109.46665 * 299.99857 * 12 10 9 35 35 H 1.09002 * 109.47103 * 59.99616 * 13 12 10 36 36 H 1.08998 * 109.46862 * 300.00428 * 13 12 10 37 37 H 1.09002 * 109.47153 * 59.99783 * 14 13 12 38 38 H 1.09001 * 109.46832 * 299.99974 * 14 13 12 39 39 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.59139 * 173.64403 * 23 9 8 41 41 H 1.09001 * 109.58516 * 293.92993 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1557 0.7445 -1.2360 5 1 2.7206 0.3019 -2.1321 6 6 2.7540 2.2186 -1.1478 7 6 3.2348 2.9559 -2.3996 8 6 4.7670 2.8766 -2.4769 9 7 5.1652 1.4636 -2.4190 10 6 5.9626 0.9354 -3.3685 11 8 6.2884 -0.2312 -3.3068 12 6 6.4496 1.7945 -4.5069 13 6 7.3312 0.9580 -5.4362 14 6 7.8251 1.8300 -6.5923 15 6 8.6941 1.0061 -7.5074 16 1 8.8756 -0.0353 -7.2866 17 6 9.2565 1.5818 -8.6269 18 7 9.0350 2.8499 -8.8959 19 14 10.3331 0.5604 -9.7614 20 1 10.4242 -0.8273 -9.2407 21 1 9.7385 0.5400 -11.1221 22 1 11.6918 1.1565 -9.8237 23 6 4.6825 0.6387 -1.3031 24 1 -1.0501 0.0001 0.0002 25 1 3.0098 -1.0266 -0.0184 26 1 3.0091 0.4987 0.8991 27 1 1.6690 2.2955 -1.0751 28 1 3.2095 2.6669 -0.2648 29 1 2.7989 2.4925 -3.2847 30 1 2.9274 4.0004 -2.3472 31 1 5.2063 3.4147 -1.6368 32 1 5.1102 3.3149 -3.4139 33 1 7.0286 2.6286 -4.1108 34 1 5.5948 2.1778 -5.0642 35 1 6.7525 0.1236 -5.8324 36 1 8.1859 0.5750 -4.8787 37 1 8.4037 2.6646 -6.1965 38 1 6.9701 2.2126 -7.1498 39 1 9.4310 3.2550 -9.6834 40 1 4.9699 -0.4001 -1.4654 41 1 5.1170 0.9964 -0.3696 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847095935.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:38 Heat of formation + Delta-G solvation = -15.245836 kcal Electronic energy + Delta-G solvation = -19320.561097 eV Core-core repulsion = 16393.652359 eV Total energy + Delta-G solvation = -2926.908737 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.19353 -37.89383 -35.06001 -34.20738 -32.53359 -32.06452 -31.55454 -28.32775 -27.02443 -25.49365 -23.53851 -22.63938 -20.92243 -20.04447 -18.88260 -18.18339 -16.91080 -16.24347 -15.73078 -15.52891 -15.05217 -14.82802 -14.41179 -14.26610 -13.85737 -13.65174 -13.36108 -12.92989 -12.65712 -12.57849 -12.22777 -11.76785 -11.47580 -11.33958 -11.20997 -11.07570 -10.83444 -10.80710 -10.52424 -10.49180 -10.41397 -10.27399 -9.65212 -9.60699 -9.23547 -8.98290 -8.60793 -8.30811 -5.96360 -3.97454 2.52595 2.59156 2.91727 3.08363 3.34753 3.41971 3.47977 4.07158 4.40596 4.50688 4.55971 4.64902 4.82984 4.95843 5.03918 5.15332 5.25571 5.31078 5.39870 5.44267 5.49773 5.57727 5.61758 5.71533 5.73436 5.73927 5.81605 5.85524 5.93048 6.12329 6.27416 6.54259 6.75177 6.96011 7.18496 7.36412 7.49552 7.73144 7.85796 8.04709 8.43553 8.49049 9.09941 9.66491 11.15250 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.041057 B = 0.003135 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.819260 B = 8928.310744 C = 9198.319322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.178 4.178 3 C -0.008 4.008 4 C -0.097 4.097 5 H 0.079 0.921 6 C -0.114 4.114 7 C -0.136 4.136 8 C 0.106 3.894 9 N -0.621 5.621 10 C 0.516 3.484 11 O -0.538 6.538 12 C -0.137 4.137 13 C -0.095 4.095 14 C 0.020 3.980 15 C -0.516 4.516 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.116 3.884 24 H 0.215 0.785 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.015 0.985 38 H 0.015 0.985 39 H 0.259 0.741 40 H 0.093 0.907 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.363 1.004 19.031 24.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.178 4.178 3 C -0.046 4.046 4 C -0.117 4.117 5 H 0.097 0.903 6 C -0.151 4.151 7 C -0.174 4.174 8 C -0.017 4.017 9 N -0.356 5.356 10 C 0.306 3.694 11 O -0.414 6.414 12 C -0.177 4.177 13 C -0.133 4.133 14 C -0.017 4.017 15 C -0.555 4.555 16 H 0.075 0.925 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.007 4.007 24 H 0.232 0.768 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.111 0.889 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.108 0.500 18.917 24.215 hybrid contribution 0.238 -0.319 -0.639 0.753 sum -14.870 0.181 18.278 23.563 Atomic orbital electron populations 1.24883 0.95958 1.01483 1.01003 1.23035 0.94450 1.00030 1.00303 1.18744 0.84912 1.01986 0.98911 1.21514 0.95854 0.96210 0.98082 0.90280 1.21591 1.01084 0.94329 0.98106 1.22005 0.95613 1.01018 0.98786 1.21850 0.94767 0.81767 1.03346 1.48193 1.50554 1.11042 1.25826 1.21284 0.76988 0.88453 0.82702 1.90661 1.56832 1.17648 1.76281 1.21864 1.01515 0.99461 0.94847 1.21453 0.97445 0.98132 0.96278 1.19134 0.96001 0.94776 0.91764 1.21318 1.29341 0.96940 1.07867 0.92528 1.25022 0.96714 0.94969 0.97858 1.69973 1.45095 1.11394 1.27326 0.86542 0.80274 0.80594 0.80662 1.19680 1.21052 1.21043 1.21523 0.92223 0.97598 0.89386 0.76794 0.89151 0.89342 0.91645 0.91681 0.91285 0.90600 0.91401 0.88935 0.89412 0.89425 0.92749 0.92712 0.96618 0.96632 0.93142 0.88857 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.80 19.25 29.55 0.57 -1.23 16 2 C -0.18 -1.63 12.30 -37.12 -0.46 -2.09 16 3 C -0.01 -0.07 5.19 -29.52 -0.15 -0.22 16 4 C -0.10 -0.87 2.31 -90.50 -0.21 -1.08 16 5 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 6 C -0.11 -0.90 5.00 -26.69 -0.13 -1.04 16 7 C -0.14 -1.12 6.10 -26.39 -0.16 -1.29 16 8 C 0.11 1.01 6.37 -3.49 -0.02 0.99 16 9 N -0.62 -7.81 2.97 -172.51 -0.51 -8.32 16 10 C 0.52 8.58 7.70 -10.99 -0.08 8.50 16 11 O -0.54 -10.96 15.40 5.55 0.09 -10.87 16 12 C -0.14 -2.32 4.05 -27.89 -0.11 -2.44 16 13 C -0.09 -2.09 4.44 -26.74 -0.12 -2.21 16 14 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 15 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 16 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 17 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.23 13.29 55.43 0.74 -26.50 16 19 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 20 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 23 C 0.12 1.23 5.71 -3.71 -0.02 1.21 16 24 H 0.22 1.10 7.80 -54.09 -0.42 0.68 16 25 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.53 7.35 -51.92 -0.38 0.15 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.89 5.93 -51.93 -0.31 0.58 16 33 H 0.09 1.35 7.93 -51.93 -0.41 0.94 16 34 H 0.09 1.36 7.70 -51.93 -0.40 0.96 16 35 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 36 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.09 1.16 7.01 -51.93 -0.36 0.79 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 337.86 15.07 5.09 5.09 Total: -1.00 -33.80 337.86 -7.97 -41.77 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -6.90 Total: -3.94 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -1.45 Total: -14.37 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: 0.22 Total: -34.81 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.80 -7.97 -41.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847095935.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.521 kcal (2) G-P(sol) polarization free energy of solvation -33.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds