Wall clock time and date at job start Mon Mar 30 2020 07:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47270 * 121.03029 * 3 2 1 5 5 H 1.08998 * 109.49694 * 305.06591 * 4 3 2 6 6 C 1.53042 * 109.52551 * 65.14683 * 4 3 2 7 7 C 1.53040 * 109.53871 * 181.33389 * 6 4 3 8 8 C 1.53620 * 109.24368 * 298.50818 * 7 6 4 9 9 N 1.46921 * 108.54214 * 54.85383 * 8 7 6 10 10 C 1.34779 * 120.62879 * 126.36914 * 9 8 7 11 11 O 1.21286 * 120.00040 * 179.72216 * 10 9 8 12 12 C 1.50698 * 120.00201 * 359.72485 * 10 9 8 13 13 C 1.52992 * 109.47592 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47482 * 179.97438 * 13 12 10 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47432 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46890 * 120.00210 * 19 17 15 22 22 H 1.48501 * 109.47062 * 240.00257 * 19 17 15 23 23 C 1.46923 * 118.74197 * 306.09814 * 9 8 7 24 24 H 4.44646 * 5.63388 * 180.02562 * 4 1 2 25 25 H 1.08999 * 109.47392 * 1.02828 * 3 2 1 26 26 H 1.09006 * 109.46914 * 241.02638 * 3 2 1 27 27 H 1.09008 * 109.45680 * 301.35356 * 6 4 3 28 28 H 1.08996 * 109.46444 * 61.30973 * 6 4 3 29 29 H 1.09002 * 109.49699 * 58.58756 * 7 6 4 30 30 H 1.09005 * 109.49696 * 178.64346 * 7 6 4 31 31 H 1.09005 * 109.73786 * 295.11903 * 8 7 6 32 32 H 1.08995 * 109.66568 * 174.54975 * 8 7 6 33 33 H 1.09002 * 109.47210 * 59.99599 * 12 10 9 34 34 H 1.09001 * 109.46665 * 299.99857 * 12 10 9 35 35 H 1.09002 * 109.47103 * 59.99616 * 13 12 10 36 36 H 1.08998 * 109.46862 * 300.00428 * 13 12 10 37 37 H 1.09002 * 109.47153 * 59.99783 * 14 13 12 38 38 H 1.09001 * 109.46832 * 299.99974 * 14 13 12 39 39 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.59139 * 173.64403 * 23 9 8 41 41 H 1.09001 * 109.58516 * 293.92993 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1557 0.7445 -1.2360 5 1 2.7206 0.3019 -2.1321 6 6 2.7540 2.2186 -1.1478 7 6 3.2348 2.9559 -2.3996 8 6 4.7670 2.8766 -2.4769 9 7 5.1652 1.4636 -2.4190 10 6 5.9626 0.9354 -3.3685 11 8 6.2884 -0.2312 -3.3068 12 6 6.4496 1.7945 -4.5069 13 6 7.3312 0.9580 -5.4362 14 6 7.8251 1.8300 -6.5923 15 6 8.6941 1.0061 -7.5074 16 1 8.8756 -0.0353 -7.2866 17 6 9.2565 1.5818 -8.6269 18 7 9.0350 2.8499 -8.8959 19 14 10.3331 0.5604 -9.7614 20 1 10.4242 -0.8273 -9.2407 21 1 9.7385 0.5400 -11.1221 22 1 11.6918 1.1565 -9.8237 23 6 4.6825 0.6387 -1.3031 24 1 -1.0501 0.0001 0.0002 25 1 3.0098 -1.0266 -0.0184 26 1 3.0091 0.4987 0.8991 27 1 1.6690 2.2955 -1.0751 28 1 3.2095 2.6669 -0.2648 29 1 2.7989 2.4925 -3.2847 30 1 2.9274 4.0004 -2.3472 31 1 5.2063 3.4147 -1.6368 32 1 5.1102 3.3149 -3.4139 33 1 7.0286 2.6286 -4.1108 34 1 5.5948 2.1778 -5.0642 35 1 6.7525 0.1236 -5.8324 36 1 8.1859 0.5750 -4.8787 37 1 8.4037 2.6646 -6.1965 38 1 6.9701 2.2126 -7.1498 39 1 9.4310 3.2550 -9.6834 40 1 4.9699 -0.4001 -1.4654 41 1 5.1170 0.9964 -0.3696 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847095935.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:38 Heat of formation + Delta-G solvation = -34.382779 kcal Electronic energy + Delta-G solvation = -19321.390937 eV Core-core repulsion = 16393.652359 eV Total energy + Delta-G solvation = -2927.738577 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.28689 -38.92604 -36.15132 -35.88760 -34.06793 -33.27123 -32.41419 -29.95979 -27.95359 -26.69347 -25.23486 -23.40926 -22.37949 -21.30672 -19.93976 -18.88587 -18.48932 -17.96680 -16.85705 -16.78561 -16.47028 -15.86444 -15.58156 -15.31305 -14.89628 -14.69009 -14.39515 -14.12310 -13.89777 -13.80697 -13.58843 -13.27169 -13.09853 -12.64447 -12.52450 -12.38594 -12.19022 -11.93478 -11.79181 -11.57035 -11.55896 -11.45193 -11.22185 -11.07729 -10.91357 -10.67018 -10.54878 -9.62599 -8.20661 -6.30437 1.39208 1.39456 1.53404 1.61250 1.84391 1.95409 2.09130 2.41638 3.12303 3.45715 3.60393 3.78695 3.89760 4.00361 4.13133 4.19208 4.23746 4.31581 4.40048 4.55860 4.58660 4.74389 4.78842 4.83425 4.90037 4.91222 4.95599 5.07549 5.12546 5.15368 5.18665 5.20349 5.26057 5.44389 5.53100 5.60934 5.74953 5.86235 6.26689 6.38517 6.74151 6.84914 7.18858 7.38220 8.91145 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.041057 B = 0.003135 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.819260 B = 8928.310744 C = 9198.319322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.208 4.208 3 C -0.006 4.006 4 C -0.088 4.088 5 H 0.054 0.946 6 C -0.109 4.109 7 C -0.132 4.132 8 C 0.098 3.902 9 N -0.612 5.612 10 C 0.514 3.486 11 O -0.586 6.586 12 C -0.128 4.128 13 C -0.082 4.082 14 C 0.027 3.973 15 C -0.547 4.547 16 H 0.050 0.950 17 C 0.003 3.997 18 N -0.929 5.929 19 Si 0.962 3.038 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.274 1.274 23 C 0.113 3.887 24 H 0.239 0.761 25 H 0.090 0.910 26 H 0.108 0.892 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.053 0.947 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.037 0.963 36 H 0.040 0.960 37 H 0.002 0.998 38 H 0.001 0.999 39 H 0.265 0.735 40 H 0.070 0.930 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.022 1.855 20.128 25.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.208 4.208 3 C -0.043 4.043 4 C -0.107 4.107 5 H 0.072 0.928 6 C -0.147 4.147 7 C -0.170 4.170 8 C -0.024 4.024 9 N -0.345 5.345 10 C 0.304 3.696 11 O -0.467 6.467 12 C -0.167 4.167 13 C -0.120 4.120 14 C -0.010 4.010 15 C -0.585 4.585 16 H 0.068 0.932 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.786 3.214 20 H -0.193 1.193 21 H -0.200 1.200 22 H -0.200 1.200 23 C -0.009 4.009 24 H 0.256 0.744 25 H 0.109 0.891 26 H 0.126 0.874 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.126 0.874 34 H 0.122 0.878 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.021 0.979 38 H 0.019 0.981 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.803 1.388 20.045 25.563 hybrid contribution 0.374 -0.542 -0.945 1.151 sum -15.429 0.847 19.101 24.568 Atomic orbital electron populations 1.25639 0.96906 1.00596 1.00115 1.23471 0.95259 1.00922 1.01179 1.18749 0.84491 1.02119 0.98922 1.21383 0.94259 0.97319 0.97775 0.92751 1.21576 1.01237 0.93229 0.98609 1.21991 0.94356 1.02345 0.98325 1.22162 0.95911 0.79820 1.04513 1.48222 1.48780 1.12527 1.24928 1.21105 0.77569 0.87646 0.83316 1.90643 1.59070 1.19428 1.77519 1.21687 1.01454 0.99082 0.94524 1.21163 0.97572 0.97560 0.95691 1.19010 0.94844 0.94563 0.92575 1.21715 1.30492 0.97129 1.09160 0.93174 1.25902 0.97971 0.96220 0.99386 1.70069 1.45908 1.12878 1.28070 0.85449 0.78525 0.78908 0.78483 1.19305 1.20038 1.19959 1.21677 0.93513 0.96272 0.89464 0.74416 0.89130 0.87359 0.91591 0.89885 0.92860 0.88287 0.88901 0.88918 0.87405 0.87792 0.94373 0.94109 0.97941 0.98098 0.92630 0.91127 0.89098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.24 19.25 74.32 1.43 -1.81 16 2 C -0.21 -3.53 12.30 31.12 0.38 -3.15 16 3 C -0.01 -0.08 5.19 28.79 0.15 0.07 16 4 C -0.09 -1.48 2.31 -10.72 -0.02 -1.50 16 5 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 6 C -0.11 -1.46 5.00 30.62 0.15 -1.31 16 7 C -0.13 -1.86 6.10 30.82 0.19 -1.67 16 8 C 0.10 1.62 6.37 86.51 0.55 2.17 16 9 N -0.61 -14.67 2.97 -818.08 -2.43 -17.10 16 10 C 0.51 17.11 7.70 87.66 0.67 17.79 16 11 O -0.59 -24.61 15.40 -3.05 -0.05 -24.66 16 12 C -0.13 -4.31 4.05 29.84 0.12 -4.19 16 13 C -0.08 -3.69 4.44 30.59 0.14 -3.55 16 14 C 0.03 1.46 4.97 29.85 0.15 1.60 16 15 C -0.55 -32.57 9.11 25.60 0.23 -32.34 16 16 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 17 C 0.00 0.18 5.46 84.66 0.46 0.65 16 18 N -0.93 -56.62 13.29 21.45 0.28 -56.34 16 19 Si 0.96 45.55 29.54 68.60 2.03 47.57 16 20 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 21 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 23 C 0.11 2.29 5.71 86.36 0.49 2.78 16 24 H 0.24 1.93 7.80 -4.41 -0.03 1.90 16 25 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 27 H 0.07 0.92 7.35 -2.38 -0.02 0.90 16 28 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.09 1.56 5.93 -2.39 -0.01 1.55 16 33 H 0.11 3.19 7.93 -2.39 -0.02 3.17 16 34 H 0.10 3.15 7.70 -2.39 -0.02 3.13 16 35 H 0.04 1.81 8.10 -2.39 -0.02 1.79 16 36 H 0.04 1.92 8.10 -2.39 -0.02 1.90 16 37 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 38 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 39 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 40 H 0.07 1.78 7.01 -2.39 -0.02 1.77 16 41 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -74.13 337.86 5.91 -68.22 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: 0.97 Total: 6.76 kcal Atomic # 6 Polarization: -29.56 SS G_CDS: 5.10 Total: -24.46 kcal Atomic # 7 Polarization: -71.29 SS G_CDS: -2.14 Total: -73.44 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.05 Total: -24.66 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Total: -74.13 5.91 -68.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847095935.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.836 kcal (2) G-P(sol) polarization free energy of solvation -74.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds