Wall clock time and date at job start Mon Mar 30 2020 06:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53014 * 109.33489 * 2 1 4 4 C 1.53228 * 109.37564 * 183.47761 * 3 2 1 5 5 C 1.51271 * 108.69509 * 305.65665 * 4 3 2 6 6 C 1.32996 * 120.85270 * 231.23416 * 5 4 3 7 7 C 1.47107 * 119.99898 * 192.05338 * 6 5 4 8 8 O 1.21612 * 120.00143 * 7.06494 * 7 6 5 9 9 N 1.34775 * 119.99679 * 187.06545 * 7 6 5 10 10 C 1.47064 * 136.05747 * 359.62331 * 9 7 6 11 11 C 1.53244 * 88.08396 * 207.20667 * 10 9 7 12 12 C 1.50695 * 114.32791 * 220.47330 * 11 10 9 13 13 H 1.08005 * 120.00480 * 93.75581 * 12 11 10 14 14 C 1.37878 * 120.00054 * 273.75917 * 12 11 10 15 15 N 1.31513 * 119.99866 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99985 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47097 * 60.00298 * 16 14 12 18 18 H 1.48504 * 109.47162 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47274 * 300.00131 * 16 14 12 20 20 C 1.47065 * 136.05486 * 180.02562 * 9 7 6 21 21 C 1.51272 * 118.30076 * 51.25940 * 5 4 3 22 22 C 1.52954 * 109.41565 * 120.51186 * 2 1 3 23 23 H 1.08997 * 109.47158 * 299.48912 * 1 2 3 24 24 H 1.09005 * 109.47176 * 59.49015 * 1 2 3 25 25 H 1.08998 * 109.47169 * 179.48477 * 1 2 3 26 26 H 1.08999 * 109.41227 * 240.37358 * 2 1 3 27 27 H 1.08997 * 109.33608 * 63.59899 * 3 2 1 28 28 H 1.08995 * 109.65231 * 303.54509 * 3 2 1 29 29 H 1.09006 * 109.62543 * 185.85469 * 4 3 2 30 30 H 1.08993 * 109.63135 * 65.47283 * 4 3 2 31 31 H 1.07994 * 119.99979 * 12.04601 * 6 5 4 32 32 H 1.08991 * 113.47279 * 321.93948 * 10 9 7 33 33 H 1.09007 * 113.46665 * 92.38474 * 10 9 7 34 34 H 1.09001 * 114.19505 * 87.73031 * 11 10 9 35 35 H 0.97006 * 119.99918 * 179.97438 * 15 14 12 36 36 H 1.09003 * 113.46718 * 267.62183 * 20 9 7 37 37 H 1.08995 * 113.47019 * 38.06136 * 20 9 7 38 38 H 1.09004 * 109.62561 * 68.35755 * 21 5 4 39 39 H 1.08994 * 109.63094 * 188.74222 * 21 5 4 40 40 H 1.09000 * 109.48295 * 56.38660 * 22 2 1 41 41 H 1.09004 * 109.49566 * 296.35472 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0366 1.4438 0.0000 4 6 3.5664 1.4458 -0.0877 5 6 4.1172 0.5880 1.0299 6 6 5.0605 1.0521 1.8444 7 6 5.7703 0.1327 2.7472 8 8 5.5881 -1.0665 2.6601 9 7 6.6225 0.6195 3.6709 10 6 7.1011 1.9508 4.0728 11 6 8.3921 1.2833 4.5588 12 6 8.9225 1.8305 5.8589 13 1 8.6566 1.3572 6.7926 14 6 9.7471 2.9355 5.8565 15 7 10.0712 3.5116 4.7196 16 14 10.4039 3.6142 7.4681 17 1 11.2057 2.5698 8.1550 18 1 11.2612 4.7957 7.1950 19 1 9.2677 4.0164 8.3356 20 6 7.4885 0.0527 4.7157 21 6 3.5680 -0.8116 1.1970 22 6 2.0384 -0.7324 1.2428 23 1 -0.3633 0.5059 0.8945 24 1 -0.3634 0.5218 -0.8854 25 1 -0.3633 -1.0276 -0.0092 26 1 1.8922 -0.5082 -0.8936 27 1 1.7246 1.9358 0.9212 28 1 1.6227 1.9775 -0.8555 29 1 3.9377 2.4654 0.0165 30 1 3.8785 1.0390 -1.0494 31 1 5.3056 2.1039 1.8430 32 1 7.2543 2.6288 3.2333 33 1 6.5152 2.3986 4.8755 34 1 9.1582 1.1799 3.7904 35 1 10.6511 4.2893 4.7179 36 1 7.0068 -0.0107 5.6915 37 1 7.9703 -0.8797 4.4215 38 1 3.8774 -1.4294 0.3539 39 1 3.9430 -1.2438 2.1246 40 1 1.6228 -1.7398 1.2666 41 1 1.7291 -0.1903 2.1365 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855474999.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:52 Heat of formation + Delta-G solvation = -4.984335 kcal Electronic energy + Delta-G solvation = -19610.493102 eV Core-core repulsion = 16684.029337 eV Total energy + Delta-G solvation = -2926.463765 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.72729 -38.60226 -37.00462 -33.52870 -32.69251 -31.00875 -29.86550 -28.37693 -25.52285 -24.95475 -23.99193 -22.98904 -21.03325 -20.24036 -18.86965 -17.70263 -16.87211 -16.26594 -15.41763 -14.84120 -14.56619 -14.44270 -14.43016 -14.22748 -13.78265 -13.33102 -12.97923 -12.51724 -12.49651 -12.20867 -12.12781 -11.74917 -11.53497 -11.50143 -11.29595 -11.05900 -10.96494 -10.84987 -10.78430 -10.51115 -10.29133 -10.25322 -9.43702 -9.16667 -8.92189 -8.67012 -8.53235 -7.77676 -6.18027 -4.23754 1.66897 3.25390 3.30806 3.32822 3.65123 3.81209 4.33551 4.60867 4.67078 4.74066 4.94355 5.07028 5.11678 5.26756 5.36048 5.44410 5.47300 5.53583 5.58293 5.68367 5.75719 5.84108 5.92384 6.00473 6.05792 6.10289 6.12974 6.18321 6.23562 6.34735 6.43899 6.48402 6.56629 6.68294 6.75553 6.81996 7.00133 7.55992 7.79821 8.18751 8.59266 8.79993 8.84592 9.43003 10.91730 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.041221 B = 0.003560 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.103669 B = 7862.873773 C = 8149.493024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.111 4.111 4 C -0.090 4.090 5 C -0.040 4.040 6 C -0.209 4.209 7 C 0.563 3.437 8 O -0.563 6.563 9 N -0.638 5.638 10 C 0.099 3.901 11 C 0.034 3.966 12 C -0.518 4.518 13 H 0.063 0.937 14 C 0.068 3.932 15 N -0.886 5.886 16 Si 0.896 3.104 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.099 3.901 21 C -0.119 4.119 22 C -0.110 4.110 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.123 0.877 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.265 0.735 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.123 0.877 40 H 0.063 0.937 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.768 -2.639 -8.690 17.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.148 4.148 4 C -0.128 4.128 5 C -0.042 4.042 6 C -0.230 4.230 7 C 0.357 3.643 8 O -0.447 6.447 9 N -0.370 5.370 10 C -0.023 4.023 11 C 0.015 3.985 12 C -0.556 4.556 13 H 0.081 0.919 14 C -0.135 4.135 15 N -0.523 5.523 16 Si 0.724 3.276 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.023 4.023 21 C -0.155 4.155 22 C -0.148 4.148 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.141 0.859 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.141 0.859 40 H 0.082 0.918 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.884 -3.159 -8.955 17.655 hybrid contribution 0.359 0.741 0.763 1.122 sum -14.525 -2.419 -8.192 16.851 Atomic orbital electron populations 1.21839 0.95467 1.01562 1.01571 1.21182 0.95210 0.96076 0.98977 1.21629 0.94548 0.96563 1.02071 1.20911 0.95707 0.99221 0.96915 1.22553 0.92512 0.96443 0.92678 1.22359 1.00676 0.99725 1.00195 1.18066 0.78332 0.87684 0.80254 1.90528 1.64658 1.16435 1.73125 1.49916 1.41585 1.13152 1.32316 1.23553 0.96480 0.84628 0.97686 1.20295 0.91124 0.89262 0.97842 1.20879 1.29925 1.12943 0.91860 0.91883 1.25031 0.95415 0.96604 0.96479 1.69946 1.35619 1.21381 1.25362 0.86591 0.79016 0.78476 0.83559 1.20041 1.21223 1.20057 1.23329 0.90086 0.99655 0.89229 1.21567 0.93984 0.93528 1.06438 1.21648 0.95575 1.00095 0.97436 0.92755 0.92903 0.92786 0.91264 0.91779 0.91730 0.90883 0.90119 0.85944 0.92228 0.90818 0.91416 0.92577 0.90908 0.92473 0.91135 0.85941 0.91812 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.18 37.16 0.34 -0.85 16 2 C -0.10 -0.92 2.61 -90.64 -0.24 -1.15 16 3 C -0.11 -1.06 5.23 -26.61 -0.14 -1.19 16 4 C -0.09 -0.99 6.03 -27.49 -0.17 -1.16 16 5 C -0.04 -0.57 5.39 -100.61 -0.54 -1.11 16 6 C -0.21 -3.48 9.49 -37.80 -0.36 -3.84 16 7 C 0.56 11.44 7.87 -12.66 -0.10 11.34 16 8 O -0.56 -12.42 13.99 5.27 0.07 -12.34 16 9 N -0.64 -13.43 3.69 -186.80 -0.69 -14.12 16 10 C 0.10 2.13 7.90 -8.64 -0.07 2.06 16 11 C 0.03 0.81 3.77 -91.40 -0.34 0.46 16 12 C -0.52 -13.26 8.83 -34.44 -0.30 -13.57 16 13 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 14 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 15 N -0.89 -24.21 13.26 55.43 0.74 -23.47 16 16 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 20 C 0.10 2.12 8.19 -8.51 -0.07 2.05 16 21 C -0.12 -1.69 5.30 -27.48 -0.15 -1.84 16 22 C -0.11 -1.25 5.22 -26.64 -0.14 -1.39 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.76 7.92 -51.93 -0.41 0.34 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.12 1.90 7.90 -52.49 -0.41 1.49 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.07 1.55 8.10 -51.92 -0.42 1.13 16 34 H 0.07 1.76 8.11 -51.93 -0.42 1.34 16 35 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 36 H 0.07 1.49 8.10 -51.93 -0.42 1.07 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.12 2.14 4.77 -52.96 -0.25 1.89 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 330.97 15.07 4.99 4.99 Total: -1.00 -27.97 330.97 -9.24 -37.21 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -6.96 Total: 1.17 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -2.37 Total: -8.50 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.05 Total: -37.60 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.07 Total: -12.34 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.97 -9.24 -37.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855474999.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.227 kcal (2) G-P(sol) polarization free energy of solvation -27.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds