Wall clock time and date at job start Mon Mar 30 2020 06:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53014 * 109.33489 * 2 1 4 4 C 1.53228 * 109.37564 * 183.47761 * 3 2 1 5 5 C 1.51271 * 108.69509 * 305.65665 * 4 3 2 6 6 C 1.32996 * 120.85270 * 231.23416 * 5 4 3 7 7 C 1.47107 * 119.99898 * 192.05338 * 6 5 4 8 8 O 1.21612 * 120.00143 * 7.06494 * 7 6 5 9 9 N 1.34775 * 119.99679 * 187.06545 * 7 6 5 10 10 C 1.47064 * 136.05747 * 359.62331 * 9 7 6 11 11 C 1.53244 * 88.08396 * 207.20667 * 10 9 7 12 12 C 1.50695 * 114.32791 * 220.47330 * 11 10 9 13 13 H 1.08005 * 120.00480 * 93.75581 * 12 11 10 14 14 C 1.37878 * 120.00054 * 273.75917 * 12 11 10 15 15 N 1.31513 * 119.99866 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99985 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47097 * 60.00298 * 16 14 12 18 18 H 1.48504 * 109.47162 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47274 * 300.00131 * 16 14 12 20 20 C 1.47065 * 136.05486 * 180.02562 * 9 7 6 21 21 C 1.51272 * 118.30076 * 51.25940 * 5 4 3 22 22 C 1.52954 * 109.41565 * 120.51186 * 2 1 3 23 23 H 1.08997 * 109.47158 * 299.48912 * 1 2 3 24 24 H 1.09005 * 109.47176 * 59.49015 * 1 2 3 25 25 H 1.08998 * 109.47169 * 179.48477 * 1 2 3 26 26 H 1.08999 * 109.41227 * 240.37358 * 2 1 3 27 27 H 1.08997 * 109.33608 * 63.59899 * 3 2 1 28 28 H 1.08995 * 109.65231 * 303.54509 * 3 2 1 29 29 H 1.09006 * 109.62543 * 185.85469 * 4 3 2 30 30 H 1.08993 * 109.63135 * 65.47283 * 4 3 2 31 31 H 1.07994 * 119.99979 * 12.04601 * 6 5 4 32 32 H 1.08991 * 113.47279 * 321.93948 * 10 9 7 33 33 H 1.09007 * 113.46665 * 92.38474 * 10 9 7 34 34 H 1.09001 * 114.19505 * 87.73031 * 11 10 9 35 35 H 0.97006 * 119.99918 * 179.97438 * 15 14 12 36 36 H 1.09003 * 113.46718 * 267.62183 * 20 9 7 37 37 H 1.08995 * 113.47019 * 38.06136 * 20 9 7 38 38 H 1.09004 * 109.62561 * 68.35755 * 21 5 4 39 39 H 1.08994 * 109.63094 * 188.74222 * 21 5 4 40 40 H 1.09000 * 109.48295 * 56.38660 * 22 2 1 41 41 H 1.09004 * 109.49566 * 296.35472 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0366 1.4438 0.0000 4 6 3.5664 1.4458 -0.0877 5 6 4.1172 0.5880 1.0299 6 6 5.0605 1.0521 1.8444 7 6 5.7703 0.1327 2.7472 8 8 5.5881 -1.0665 2.6601 9 7 6.6225 0.6195 3.6709 10 6 7.1011 1.9508 4.0728 11 6 8.3921 1.2833 4.5588 12 6 8.9225 1.8305 5.8589 13 1 8.6566 1.3572 6.7926 14 6 9.7471 2.9355 5.8565 15 7 10.0712 3.5116 4.7196 16 14 10.4039 3.6142 7.4681 17 1 11.2057 2.5698 8.1550 18 1 11.2612 4.7957 7.1950 19 1 9.2677 4.0164 8.3356 20 6 7.4885 0.0527 4.7157 21 6 3.5680 -0.8116 1.1970 22 6 2.0384 -0.7324 1.2428 23 1 -0.3633 0.5059 0.8945 24 1 -0.3634 0.5218 -0.8854 25 1 -0.3633 -1.0276 -0.0092 26 1 1.8922 -0.5082 -0.8936 27 1 1.7246 1.9358 0.9212 28 1 1.6227 1.9775 -0.8555 29 1 3.9377 2.4654 0.0165 30 1 3.8785 1.0390 -1.0494 31 1 5.3056 2.1039 1.8430 32 1 7.2543 2.6288 3.2333 33 1 6.5152 2.3986 4.8755 34 1 9.1582 1.1799 3.7904 35 1 10.6511 4.2893 4.7179 36 1 7.0068 -0.0107 5.6915 37 1 7.9703 -0.8797 4.4215 38 1 3.8774 -1.4294 0.3539 39 1 3.9430 -1.2438 2.1246 40 1 1.6228 -1.7398 1.2666 41 1 1.7291 -0.1903 2.1365 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855474999.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:52 Heat of formation + Delta-G solvation = -18.817710 kcal Electronic energy + Delta-G solvation = -19611.092963 eV Core-core repulsion = 16684.029337 eV Total energy + Delta-G solvation = -2927.063625 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.27243 -39.84591 -38.49671 -34.65668 -34.58849 -31.96558 -31.39851 -29.62421 -27.19851 -26.71713 -25.15554 -23.94818 -22.51116 -21.34837 -20.22593 -19.14385 -18.74390 -17.90299 -16.75316 -16.57836 -16.17269 -15.82789 -15.28727 -15.17223 -15.06470 -14.45621 -14.34477 -14.09661 -13.70277 -13.38464 -13.34631 -13.26015 -13.10545 -12.73270 -12.61900 -12.53766 -12.42516 -12.18609 -11.96095 -11.72870 -11.51061 -11.22716 -11.11388 -11.04364 -10.57800 -10.29949 -9.98985 -9.45437 -8.16827 -6.28568 0.37090 1.48917 1.49576 1.57361 2.05884 2.28181 2.46937 3.13158 3.55080 3.75032 3.89611 3.93196 4.07185 4.20982 4.30342 4.39391 4.40913 4.48739 4.52171 4.56188 4.69133 4.71466 4.77330 4.81730 4.85003 4.95892 4.97457 5.02113 5.06561 5.14075 5.17835 5.26206 5.33973 5.39966 5.49592 5.58075 5.61622 5.74124 5.80565 6.22620 6.79872 6.94742 7.22677 7.41669 8.93112 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.041221 B = 0.003560 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.103669 B = 7862.873773 C = 8149.493024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.108 4.108 4 C -0.090 4.090 5 C -0.013 4.013 6 C -0.242 4.242 7 C 0.557 3.443 8 O -0.587 6.587 9 N -0.644 5.644 10 C 0.115 3.885 11 C 0.023 3.977 12 C -0.530 4.530 13 H 0.067 0.933 14 C 0.021 3.979 15 N -0.919 5.919 16 Si 0.960 3.040 17 H -0.271 1.271 18 H -0.286 1.286 19 H -0.267 1.267 20 C 0.105 3.895 21 C -0.123 4.123 22 C -0.105 4.105 23 H 0.052 0.948 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.132 0.868 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.265 0.735 36 H 0.083 0.917 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.582 -2.022 -9.388 19.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 C -0.145 4.145 4 C -0.127 4.127 5 C -0.015 4.015 6 C -0.263 4.263 7 C 0.352 3.648 8 O -0.473 6.473 9 N -0.376 5.376 10 C -0.008 4.008 11 C 0.004 3.996 12 C -0.568 4.568 13 H 0.085 0.915 14 C -0.180 4.180 15 N -0.557 5.557 16 Si 0.785 3.215 17 H -0.197 1.197 18 H -0.212 1.212 19 H -0.192 1.192 20 C -0.017 4.017 21 C -0.159 4.159 22 C -0.143 4.143 23 H 0.071 0.929 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.116 0.884 31 H 0.150 0.850 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.714 -2.551 -9.652 19.469 hybrid contribution 0.865 0.434 0.902 1.323 sum -15.849 -2.117 -8.750 18.227 Atomic orbital electron populations 1.21805 0.94069 1.02086 1.02179 1.21176 0.96345 0.95839 0.97876 1.21645 0.93134 0.96736 1.02981 1.21044 0.96823 0.99051 0.95817 1.23008 0.90127 0.96623 0.91707 1.22249 1.02758 0.99672 1.01604 1.18726 0.77997 0.88033 0.80034 1.90535 1.65442 1.17590 1.73732 1.49934 1.42215 1.12655 1.32758 1.23273 0.95163 0.84695 0.97652 1.20171 0.91441 0.91289 0.96708 1.21188 1.30055 1.13034 0.92559 0.91493 1.25787 0.95707 0.96923 0.99542 1.70059 1.36430 1.21899 1.27322 0.85575 0.78487 0.77670 0.79720 1.19658 1.21189 1.19163 1.23204 0.89840 0.98614 0.90090 1.21513 0.96197 0.93456 1.04765 1.21618 0.93175 1.01034 0.98439 0.92923 0.91522 0.92402 0.90621 0.92237 0.89295 0.89930 0.88433 0.84974 0.92326 0.90256 0.94436 0.92595 0.89857 0.92613 0.90643 0.89305 0.90958 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.18 71.98 0.66 -1.21 16 2 C -0.09 -1.51 2.61 -10.81 -0.03 -1.54 16 3 C -0.11 -1.69 5.23 30.68 0.16 -1.53 16 4 C -0.09 -1.72 6.03 30.11 0.18 -1.54 16 5 C -0.01 -0.34 5.39 -17.25 -0.09 -0.44 16 6 C -0.24 -8.02 9.49 23.43 0.22 -7.80 16 7 C 0.56 23.02 7.87 86.57 0.68 23.71 16 8 O -0.59 -26.55 13.99 -4.07 -0.06 -26.60 16 9 N -0.64 -27.60 3.69 -863.16 -3.19 -30.79 16 10 C 0.11 5.01 7.90 83.10 0.66 5.66 16 11 C 0.02 1.13 3.77 -11.30 -0.04 1.09 16 12 C -0.53 -27.37 8.83 25.60 0.23 -27.15 16 13 H 0.07 3.33 7.81 -2.91 -0.02 3.30 16 14 C 0.02 1.08 5.46 84.66 0.46 1.54 16 15 N -0.92 -50.87 13.26 21.45 0.28 -50.59 16 16 Si 0.96 41.05 29.54 68.60 2.03 43.08 16 17 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 18 H -0.29 -12.13 7.11 99.48 0.71 -11.43 16 19 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 20 C 0.10 4.57 8.19 83.17 0.68 5.25 16 21 C -0.12 -3.41 5.30 30.11 0.16 -3.25 16 22 C -0.11 -2.23 5.22 30.66 0.16 -2.07 16 23 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 1.47 7.92 -2.38 -0.02 1.45 16 30 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.13 4.05 7.90 -2.91 -0.02 4.02 16 32 H 0.06 2.53 8.14 -2.39 -0.02 2.52 16 33 H 0.08 3.35 8.10 -2.38 -0.02 3.33 16 34 H 0.04 2.04 8.11 -2.39 -0.02 2.02 16 35 H 0.27 13.96 8.31 -92.70 -0.77 13.19 16 36 H 0.08 3.42 8.10 -2.39 -0.02 3.40 16 37 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.08 2.02 8.14 -2.38 -0.02 2.01 16 39 H 0.09 3.17 4.77 -18.69 -0.09 3.08 16 40 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 Total: -1.00 -60.49 330.97 4.06 -56.44 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.91 Total: 17.74 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 4.09 Total: -9.27 kcal Atomic # 7 Polarization: -78.48 SS G_CDS: -2.90 Total: -81.38 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.06 Total: -26.60 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.08 kcal Total: -60.49 4.06 -56.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855474999.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.617 kcal (2) G-P(sol) polarization free energy of solvation -60.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds