Wall clock time and date at job start Mon Mar 30 2020 07:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47062 * 68.44162 * 3 2 1 5 5 H 1.09003 * 110.88352 * 57.42992 * 4 3 2 6 6 C 1.55153 * 111.00844 * 293.54730 * 4 3 2 7 7 C 1.54323 * 103.10236 * 206.29737 * 6 4 3 8 8 N 1.47486 * 107.03754 * 22.24109 * 7 6 4 9 9 C 1.34774 * 125.59714 * 180.99239 * 8 7 6 10 10 O 1.21276 * 120.00198 * 180.02562 * 9 8 7 11 11 C 1.50699 * 119.99506 * 0.03910 * 9 8 7 12 12 C 1.53004 * 109.47083 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47371 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47006 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47079 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00260 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00421 * 179.97438 * 15 14 13 18 18 N 1.31523 * 119.99889 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00359 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47229 * 59.99954 * 19 17 15 21 21 H 1.48503 * 109.46999 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46927 * 299.99849 * 19 17 15 23 23 C 1.47428 * 108.75727 * 1.02624 * 8 7 6 24 24 H 4.44641 * 5.63408 * 180.02562 * 4 1 2 25 25 H 1.09003 * 109.47199 * 308.44689 * 3 2 1 26 26 H 1.08995 * 109.47514 * 188.44684 * 3 2 1 27 27 H 1.09002 * 110.72030 * 324.75004 * 6 4 3 28 28 H 1.09003 * 110.72184 * 87.84655 * 6 4 3 29 29 H 1.09000 * 109.88693 * 141.69901 * 7 6 4 30 30 H 1.09005 * 109.88012 * 262.86516 * 7 6 4 31 31 H 1.08997 * 109.47634 * 300.00232 * 11 9 8 32 32 H 1.09000 * 109.47268 * 60.00297 * 11 9 8 33 33 H 1.08997 * 109.47191 * 300.00646 * 12 11 9 34 34 H 1.09000 * 109.46710 * 60.00097 * 12 11 9 35 35 H 1.09000 * 109.46994 * 300.00602 * 13 12 11 36 36 H 1.09000 * 109.46901 * 60.00488 * 13 12 11 37 37 H 1.09000 * 109.47516 * 300.00013 * 14 13 12 38 38 H 1.09000 * 109.47113 * 60.00347 * 14 13 12 39 39 H 0.97001 * 120.00002 * 179.97438 * 18 17 15 40 40 H 1.09000 * 110.36462 * 217.05803 * 23 8 7 41 41 H 1.08996 * 110.46287 * 94.77884 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1562 -0.5292 -1.3416 5 1 2.7685 0.0671 -2.1676 6 6 2.7967 -2.0278 -1.5208 7 6 3.8925 -2.5381 -2.4801 8 7 5.0337 -1.6109 -2.3650 9 6 6.1874 -1.6971 -3.0563 10 8 7.0625 -0.8761 -2.8805 11 6 6.3898 -2.8137 -4.0480 12 6 7.7720 -2.6808 -4.6905 13 6 7.9779 -3.8147 -5.6968 14 6 9.3603 -3.6821 -6.3388 15 6 9.5628 -4.7986 -7.3305 16 1 8.7833 -5.5294 -7.4875 17 6 10.7428 -4.8866 -8.0381 18 7 11.6920 -3.9964 -7.8473 19 14 10.9935 -6.2702 -9.2679 20 1 9.9490 -6.1922 -10.3205 21 1 12.3354 -6.1415 -9.8909 22 1 10.8958 -7.5770 -8.5694 23 6 4.7044 -0.5753 -1.3687 24 1 -1.0499 0.0001 -0.0002 25 1 3.0096 -0.6382 0.8049 26 1 3.0089 1.0173 0.1509 27 1 2.8445 -2.5526 -0.5667 28 1 1.8096 -2.1366 -1.9702 29 1 4.1982 -3.5440 -2.1923 30 1 3.5172 -2.5411 -3.5036 31 1 6.3178 -3.7727 -3.5351 32 1 5.6234 -2.7566 -4.8209 33 1 7.8436 -1.7217 -5.2034 34 1 8.5388 -2.7376 -3.9178 35 1 7.9064 -4.7736 -5.1834 36 1 7.2112 -3.7583 -6.4695 37 1 9.4322 -2.7233 -6.8521 38 1 10.1268 -3.7388 -5.5658 39 1 12.5223 -4.0585 -8.3449 40 1 5.1073 0.3894 -1.6771 41 1 5.0929 -0.8521 -0.3887 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000862574355.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:40 Heat of formation + Delta-G solvation = -33.467866 kcal Electronic energy + Delta-G solvation = -18713.233209 eV Core-core repulsion = 15785.534305 eV Total energy + Delta-G solvation = -2927.698904 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.14586 -38.95543 -36.62695 -35.45244 -34.60591 -32.71354 -31.38522 -30.53327 -28.31274 -26.87943 -24.57504 -23.46684 -21.80644 -21.51510 -20.20158 -18.92967 -18.41779 -18.01587 -17.34440 -16.76331 -16.50511 -16.02505 -15.58929 -15.01419 -14.86864 -14.54795 -14.24944 -14.06099 -13.99524 -13.64505 -13.48057 -13.25352 -13.12922 -12.78628 -12.45465 -12.35719 -12.16734 -12.15050 -11.98493 -11.70374 -11.38036 -11.35579 -11.17879 -11.08137 -10.93588 -10.76418 -10.54006 -9.68065 -8.18001 -6.30418 1.40561 1.44898 1.52717 1.59998 1.83723 1.99169 2.07228 2.42489 3.14323 3.28231 3.60665 3.63899 3.84884 3.98392 4.04774 4.11982 4.31077 4.35985 4.47881 4.55759 4.64480 4.67394 4.74579 4.81200 4.83550 4.86145 4.94685 5.00138 5.10684 5.18329 5.22764 5.29048 5.32345 5.36161 5.40290 5.56373 5.77823 5.88004 6.25469 6.45734 6.77627 6.87661 7.14273 7.39000 8.94009 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.058084 B = 0.002559 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.946973 B =10940.386910 C =11314.235613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.209 4.209 3 C 0.000 4.000 4 C -0.085 4.085 5 H 0.083 0.917 6 C -0.118 4.118 7 C 0.092 3.908 8 N -0.624 5.624 9 C 0.522 3.478 10 O -0.590 6.590 11 C -0.122 4.122 12 C -0.096 4.096 13 C -0.095 4.095 14 C 0.018 3.982 15 C -0.542 4.542 16 H 0.067 0.933 17 C -0.008 4.008 18 N -0.938 5.938 19 Si 0.971 3.029 20 H -0.264 1.264 21 H -0.285 1.285 22 H -0.264 1.264 23 C 0.104 3.896 24 H 0.238 0.762 25 H 0.102 0.898 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.042 0.958 34 H 0.043 0.957 35 H 0.061 0.939 36 H 0.061 0.939 37 H -0.016 1.016 38 H -0.015 1.015 39 H 0.263 0.737 40 H 0.062 0.938 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.522 3.980 16.464 30.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.209 4.209 3 C -0.037 4.037 4 C -0.105 4.105 5 H 0.102 0.898 6 C -0.156 4.156 7 C -0.030 4.030 8 N -0.358 5.358 9 C 0.313 3.687 10 O -0.471 6.471 11 C -0.161 4.161 12 C -0.134 4.134 13 C -0.132 4.132 14 C -0.019 4.019 15 C -0.580 4.580 16 H 0.085 0.915 17 C -0.206 4.206 18 N -0.578 5.578 19 Si 0.795 3.205 20 H -0.189 1.189 21 H -0.211 1.211 22 H -0.189 1.189 23 C -0.019 4.019 24 H 0.255 0.745 25 H 0.120 0.880 26 H 0.115 0.885 27 H 0.107 0.893 28 H 0.112 0.888 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.003 0.997 38 H 0.003 0.997 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -24.823 4.440 16.460 30.113 hybrid contribution 0.673 -0.157 -0.679 0.969 sum -24.150 4.283 15.781 29.165 Atomic orbital electron populations 1.25628 0.96894 1.00540 0.99779 1.23366 0.95082 1.01056 1.01391 1.18642 0.84512 1.03520 0.97003 1.22223 0.92571 0.97510 0.98162 0.89824 1.22712 0.98358 0.94244 1.00291 1.22439 0.85390 0.93603 1.01533 1.48735 1.15912 1.30123 1.40997 1.20910 0.80208 0.86478 0.81108 1.90689 1.43681 1.44530 1.68211 1.21636 0.99027 0.97601 0.97861 1.21254 0.95852 0.98475 0.97800 1.21440 0.97251 0.97382 0.97135 1.19057 0.93320 0.95161 0.94341 1.21719 1.01394 1.12221 1.22656 0.91525 1.26122 0.95803 0.99103 0.99531 1.70134 1.06925 1.37446 1.43308 0.85414 0.77309 0.79061 0.78725 1.18887 1.21094 1.18876 1.22332 0.95418 0.91724 0.92397 0.74538 0.87951 0.88482 0.89262 0.88779 0.89529 0.89993 0.86590 0.86734 0.93928 0.93855 0.92001 0.92059 0.99745 0.99698 0.92862 0.91979 0.90442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.31 19.25 74.32 1.43 -0.88 16 2 C -0.21 -2.60 12.89 31.13 0.40 -2.20 16 3 C 0.00 0.00 5.23 28.79 0.15 0.15 16 4 C -0.09 -1.00 3.04 -9.40 -0.03 -1.03 16 5 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 6 C -0.12 -1.11 5.96 31.78 0.19 -0.92 16 7 C 0.09 1.17 6.52 86.64 0.56 1.74 16 8 N -0.62 -13.19 3.34 -810.60 -2.71 -15.89 16 9 C 0.52 15.47 7.85 87.66 0.69 16.15 16 10 O -0.59 -23.45 16.24 -3.02 -0.05 -23.50 16 11 C -0.12 -3.24 4.89 29.85 0.15 -3.10 16 12 C -0.10 -3.59 4.50 30.60 0.14 -3.46 16 13 C -0.09 -3.95 5.15 30.59 0.16 -3.79 16 14 C 0.02 1.02 4.97 29.85 0.15 1.17 16 15 C -0.54 -31.75 9.11 25.60 0.23 -31.52 16 16 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 17 C -0.01 -0.50 5.46 84.65 0.46 -0.04 16 18 N -0.94 -59.58 13.29 21.45 0.28 -59.29 16 19 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 20 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 21 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 22 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 23 C 0.10 1.83 6.38 86.86 0.55 2.38 16 24 H 0.24 1.06 7.80 -4.42 -0.03 1.03 16 25 H 0.10 0.75 8.11 -2.39 -0.02 0.73 16 26 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.09 0.69 8.01 -2.39 -0.02 0.67 16 28 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.04 1.75 8.10 -2.39 -0.02 1.73 16 34 H 0.04 1.78 8.10 -2.39 -0.02 1.76 16 35 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 37 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 38 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 39 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 40 H 0.06 1.32 8.04 -2.39 -0.02 1.30 16 41 H 0.08 1.24 8.04 -2.39 -0.02 1.22 16 Total: -1.00 -77.77 346.74 5.76 -72.01 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: 0.96 Total: 4.88 kcal Atomic # 6 Polarization: -30.56 SS G_CDS: 5.24 Total: -25.33 kcal Atomic # 7 Polarization: -72.77 SS G_CDS: -2.42 Total: -75.19 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.05 Total: -23.50 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -77.77 5.76 -72.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862574355.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.542 kcal (2) G-P(sol) polarization free energy of solvation -77.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds