Wall clock time and date at job start Mon Mar 30 2020 07:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47131 * 2 1 4 4 O 1.42905 * 109.47264 * 180.02562 * 3 2 1 5 5 C 1.35897 * 117.00093 * 180.02562 * 4 3 2 6 6 C 1.38737 * 120.05547 * 359.72645 * 5 4 3 7 7 C 1.38149 * 119.94020 * 179.74326 * 6 5 4 8 8 C 1.38269 * 120.05599 * 0.51033 * 7 6 5 9 9 C 1.50701 * 119.94263 * 179.74419 * 8 7 6 10 10 H 1.09001 * 109.46850 * 160.02189 * 9 8 7 11 11 C 1.52997 * 109.46893 * 280.02189 * 9 8 7 12 12 N 1.46904 * 109.46892 * 40.02217 * 9 8 7 13 13 C 1.46897 * 110.99671 * 154.99956 * 12 9 8 14 14 C 1.50703 * 109.47003 * 179.97438 * 13 12 9 15 15 H 1.07994 * 119.99656 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99896 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99630 * 179.97438 * 16 14 13 18 18 Si 1.86792 * 120.00120 * 359.97438 * 16 14 13 19 19 H 1.48493 * 109.47205 * 90.00353 * 18 16 14 20 20 H 1.48505 * 109.47221 * 210.00287 * 18 16 14 21 21 H 1.48507 * 109.47247 * 330.00032 * 18 16 14 22 22 C 1.38265 * 120.10911 * 359.76477 * 8 7 6 23 23 C 1.38141 * 120.06229 * 359.97438 * 22 8 7 24 24 H 1.09001 * 109.46997 * 299.99574 * 1 2 3 25 25 H 1.09004 * 109.47298 * 59.99717 * 1 2 3 26 26 H 1.09004 * 109.47552 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46997 * 240.00426 * 2 1 3 28 28 H 1.08992 * 109.47534 * 120.00480 * 2 1 3 29 29 H 1.09001 * 109.47289 * 60.00050 * 3 2 1 30 30 H 1.09004 * 109.47261 * 300.00306 * 3 2 1 31 31 H 1.08000 * 120.02659 * 359.97438 * 6 5 4 32 32 H 1.07994 * 119.96900 * 180.27568 * 7 6 5 33 33 H 1.09009 * 109.46773 * 179.97438 * 11 9 8 34 34 H 1.08997 * 109.47123 * 299.99381 * 11 9 8 35 35 H 1.08992 * 109.47552 * 60.00299 * 11 9 8 36 36 H 1.00904 * 110.99912 * 278.94835 * 12 9 8 37 37 H 1.08998 * 109.47536 * 299.99592 * 13 12 9 38 38 H 1.08998 * 109.47372 * 60.00157 * 13 12 9 39 39 H 0.96999 * 119.99723 * 179.97438 * 17 16 14 40 40 H 1.08005 * 119.96603 * 179.97438 * 22 8 7 41 41 H 1.07995 * 120.03119 * 180.02562 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0860 2.6534 -0.0001 6 6 3.3315 3.8176 -0.0049 7 6 3.9611 5.0473 0.0010 8 6 5.3420 5.1183 0.0009 9 6 6.0261 6.4610 0.0014 10 1 7.0517 6.3461 0.3524 11 6 6.0338 7.0300 -1.4188 12 7 5.3035 7.3784 0.8926 13 6 6.1913 8.4379 1.3896 14 6 5.4165 9.3576 2.2978 15 1 4.3692 9.1737 2.4865 16 6 6.0445 10.4345 2.8870 17 7 5.3681 11.2374 3.6792 18 14 7.8558 10.7530 2.5599 19 1 7.9969 11.6362 1.3746 20 1 8.4641 11.4122 3.7435 21 1 8.5464 9.4639 2.3019 22 6 6.0961 3.9594 -0.0002 23 6 5.4714 2.7273 -0.0006 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8898 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 2.2529 3.7626 -0.0093 32 1 3.3742 5.9538 0.0018 33 1 6.5283 8.0015 -1.4183 34 1 6.5701 6.3493 -2.0800 35 1 5.0084 7.1450 -1.7697 36 1 4.4963 7.7701 0.4309 37 1 7.0166 7.9904 1.9435 38 1 6.5852 9.0067 0.5474 39 1 5.8100 11.9948 4.0939 40 1 7.1745 4.0175 -0.0007 41 1 6.0608 1.8224 -0.0010 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020199832.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:26 Heat of formation + Delta-G solvation = -28.056230 kcal Electronic energy + Delta-G solvation = -19086.520004 eV Core-core repulsion = 16159.055766 eV Total energy + Delta-G solvation = -2927.464238 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.11629 -38.15934 -35.84089 -34.09829 -32.70334 -30.87161 -30.66672 -28.48208 -26.69582 -26.37053 -23.25480 -22.87435 -21.58433 -20.92068 -20.14660 -18.14880 -16.88661 -16.42456 -16.11581 -15.34219 -14.66324 -14.41181 -14.34362 -14.02269 -13.91364 -13.67927 -13.24658 -12.95437 -12.69895 -12.56319 -12.41594 -12.30902 -11.99327 -11.72101 -11.57178 -11.41220 -11.23280 -10.89720 -10.73869 -10.64627 -10.50843 -10.28887 -9.78682 -9.29236 -8.81094 -8.60710 -7.90262 -7.47364 -6.06163 -4.03964 1.52939 1.63831 3.12757 3.27876 3.35752 3.38306 3.94633 4.41681 4.58697 4.59398 4.89625 4.91601 4.97209 5.06120 5.12819 5.16453 5.23867 5.28702 5.34324 5.50158 5.57673 5.59292 5.61571 5.69204 5.74213 5.79700 5.90050 6.02753 6.10828 6.24254 6.34854 6.45731 6.58038 6.79490 6.90564 6.95024 7.02346 7.48882 7.61171 7.89842 8.31714 8.64679 9.01946 9.55772 11.07226 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.031415 B = 0.003420 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.076340 B = 8184.128577 C = 8672.084158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.059 3.941 4 O -0.321 6.321 5 C 0.116 3.884 6 C -0.208 4.208 7 C -0.056 4.056 8 C -0.089 4.089 9 C 0.118 3.882 10 H 0.079 0.921 11 C -0.175 4.175 12 N -0.671 5.671 13 C 0.165 3.835 14 C -0.515 4.515 15 H 0.079 0.921 16 C 0.068 3.932 17 N -0.901 5.901 18 Si 0.878 3.122 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.267 1.267 22 C -0.081 4.081 23 C -0.154 4.154 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.335 0.665 37 H 0.026 0.974 38 H -0.019 1.019 39 H 0.264 0.736 40 H 0.125 0.875 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.657 -19.836 -10.792 23.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.017 4.017 4 O -0.235 6.235 5 C 0.071 3.929 6 C -0.227 4.227 7 C -0.074 4.074 8 C -0.090 4.090 9 C 0.007 3.993 10 H 0.097 0.903 11 C -0.234 4.234 12 N -0.301 5.301 13 C 0.037 3.963 14 C -0.554 4.554 15 H 0.097 0.903 16 C -0.134 4.134 17 N -0.540 5.540 18 Si 0.705 3.295 19 H -0.204 1.204 20 H -0.212 1.212 21 H -0.191 1.191 22 C -0.099 4.099 23 C -0.173 4.173 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.140 0.860 32 H 0.144 0.856 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.153 0.847 37 H 0.044 0.956 38 H -0.001 1.001 39 H 0.073 0.927 40 H 0.143 0.857 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.476 -20.245 -10.100 23.063 hybrid contribution 0.847 1.063 -0.798 1.576 sum -3.629 -19.182 -10.898 22.358 Atomic orbital electron populations 1.21695 0.94329 1.02409 1.02324 1.21474 0.95984 0.95049 1.03553 1.22826 0.78881 0.98479 1.01479 1.86000 1.20958 1.27438 1.89129 1.18926 0.92253 0.83823 0.97908 1.21200 0.99670 0.92454 1.09395 1.20765 0.94257 0.96780 0.95618 1.19864 0.93686 0.94745 1.00746 1.20440 0.97381 0.90200 0.91293 0.90278 1.22487 1.01985 1.01219 0.97700 1.60612 1.09874 1.21299 1.38345 1.20034 0.93249 0.88942 0.94069 1.21060 0.98776 1.08518 1.27013 0.90331 1.24909 0.97916 0.95732 0.94809 1.69901 1.36465 1.16188 1.31411 0.86818 0.85993 0.78749 0.77907 1.20364 1.21165 1.19125 1.20809 0.99639 0.91029 0.98450 1.20287 0.91236 0.98299 1.07440 0.92258 0.92374 0.91830 0.90988 0.90888 0.92011 0.92201 0.85957 0.85615 0.92225 0.92713 0.92574 0.84720 0.95567 1.00144 0.92655 0.85705 0.85731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.12 -0.93 6.30 -26.73 -0.17 -1.10 16 3 C 0.06 0.56 4.74 37.16 0.18 0.74 16 4 O -0.32 -4.09 10.14 -19.42 -0.20 -4.29 16 5 C 0.12 1.60 6.69 -39.21 -0.26 1.34 16 6 C -0.21 -2.85 9.04 -39.43 -0.36 -3.21 16 7 C -0.06 -0.84 9.32 -39.60 -0.37 -1.21 16 8 C -0.09 -1.39 4.96 -104.60 -0.52 -1.91 16 9 C 0.12 1.97 2.79 -68.86 -0.19 1.78 16 10 H 0.08 1.35 7.66 -51.93 -0.40 0.95 16 11 C -0.17 -2.55 9.14 37.16 0.34 -2.21 16 12 N -0.67 -13.75 5.69 -109.22 -0.62 -14.37 16 13 C 0.16 3.98 4.31 -4.98 -0.02 3.95 16 14 C -0.52 -14.77 9.87 -34.44 -0.34 -15.11 16 15 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 16 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 17 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 18 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 21 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 22 C -0.08 -1.13 9.66 -39.61 -0.38 -1.51 16 23 C -0.15 -2.08 9.99 -39.43 -0.39 -2.48 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.58 7.67 -51.93 -0.40 0.18 16 30 H 0.06 0.53 7.65 -51.93 -0.40 0.13 16 31 H 0.12 1.41 6.30 -52.49 -0.33 1.08 16 32 H 0.13 1.85 7.24 -52.49 -0.38 1.47 16 33 H 0.06 0.92 7.45 -51.92 -0.39 0.53 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 36 H 0.33 6.59 7.81 -39.29 -0.31 6.28 16 37 H 0.03 0.66 7.11 -51.93 -0.37 0.29 16 38 H -0.02 -0.45 6.86 -51.93 -0.36 -0.81 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.13 1.50 8.03 -52.48 -0.42 1.08 16 41 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 335.38 15.07 5.05 5.05 Total: -1.00 -31.37 335.38 -8.59 -39.97 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -6.72 Total: 3.24 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -2.22 Total: -19.55 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.15 Total: -41.39 kcal Atomic # 8 Polarization: -4.09 SS G_CDS: -0.20 Total: -4.29 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.37 -8.59 -39.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199832.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.911 kcal (2) G-P(sol) polarization free energy of solvation -31.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds