Wall clock time and date at job start Mon Mar 30 2020 07:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46649 * 2 1 4 4 N 1.46895 * 109.46704 * 119.99900 * 2 1 3 5 5 C 1.46901 * 111.00227 * 85.00361 * 4 2 1 6 6 C 1.52997 * 109.47497 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.47256 * 179.97438 * 6 5 4 8 8 O 1.42895 * 109.47118 * 180.02562 * 7 6 5 9 9 C 1.35676 * 117.00189 * 180.02562 * 8 7 6 10 10 C 1.39314 * 119.81644 * 0.25097 * 9 8 7 11 11 C 1.36433 * 120.18492 * 180.26044 * 10 9 8 12 12 C 1.40834 * 119.81344 * 359.46774 * 11 10 9 13 13 C 1.41212 * 120.18284 * 180.30274 * 12 11 10 14 14 H 1.08009 * 119.99828 * 335.13728 * 13 12 11 15 15 C 1.39889 * 120.00430 * 155.14349 * 13 12 11 16 16 N 1.30880 * 119.99560 * 342.15123 * 15 13 12 17 17 Si 1.86797 * 120.00332 * 162.15359 * 15 13 12 18 18 H 1.48502 * 109.47009 * 94.65485 * 17 15 13 19 19 H 1.48493 * 109.47104 * 214.65540 * 17 15 13 20 20 H 1.48502 * 109.47051 * 334.65599 * 17 15 13 21 21 C 1.40835 * 119.63793 * 0.27628 * 12 11 10 22 22 C 1.36438 * 119.81360 * 0.02562 * 21 12 11 23 23 H 1.08997 * 109.47425 * 299.99864 * 1 2 3 24 24 H 1.09004 * 109.47109 * 59.99984 * 1 2 3 25 25 H 1.09004 * 109.46820 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47050 * 240.00109 * 2 1 3 27 27 H 1.09001 * 109.46344 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47156 * 299.99608 * 3 2 1 29 29 H 1.08997 * 109.47096 * 59.99935 * 3 2 1 30 30 H 1.00901 * 111.00264 * 321.04631 * 4 2 1 31 31 H 1.09002 * 109.47180 * 59.99456 * 5 4 2 32 32 H 1.08996 * 109.46796 * 300.00166 * 5 4 2 33 33 H 1.09002 * 109.46774 * 59.99913 * 6 5 4 34 34 H 1.09001 * 109.47116 * 300.00308 * 6 5 4 35 35 H 1.09002 * 109.47050 * 60.00388 * 7 6 5 36 36 H 1.09003 * 109.47076 * 300.00543 * 7 6 5 37 37 H 1.08001 * 119.90559 * 0.02562 * 10 9 8 38 38 H 1.08004 * 120.09541 * 179.74021 * 11 10 9 39 39 H 0.96996 * 120.00015 * 180.02562 * 16 15 13 40 40 H 1.08002 * 120.09015 * 180.02562 * 21 12 11 41 41 H 1.07998 * 119.90554 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0825 -2.1437 0.9807 6 6 2.5961 -2.8289 2.2486 7 6 2.6610 -4.3405 2.0210 8 8 3.1401 -4.9804 3.2054 9 6 3.2582 -6.3316 3.1707 10 6 2.9222 -7.0268 2.0112 11 6 3.0330 -8.3860 1.9698 12 6 3.4993 -9.0852 3.0999 13 6 3.6231 -10.4914 3.0636 14 1 3.0193 -11.0692 2.3793 15 6 4.5276 -11.1362 3.9138 16 7 5.4919 -10.4563 4.4802 17 14 4.3592 -12.9676 4.2408 18 1 5.2356 -13.7198 3.3072 19 1 4.7608 -13.2596 5.6403 20 1 2.9474 -13.3795 4.0347 21 6 3.8419 -8.3742 4.2664 22 6 3.7194 -7.0156 4.2933 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.4495 -0.4721 2.0022 31 1 2.7589 -2.3575 0.1531 32 1 1.0871 -2.5187 0.7425 33 1 1.9200 -2.6151 3.0764 34 1 3.5916 -2.4538 2.4865 35 1 3.3369 -4.5546 1.1931 36 1 1.6653 -4.7152 1.7833 37 1 2.5694 -6.4886 1.1438 38 1 2.7681 -8.9239 1.0715 39 1 6.1193 -10.9034 5.0694 40 1 4.2007 -8.9030 5.1371 41 1 3.9822 -6.4689 5.1868 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020525092.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:21 Heat of formation + Delta-G solvation = -55.030795 kcal Electronic energy + Delta-G solvation = -18720.273983 eV Core-core repulsion = 15791.640041 eV Total energy + Delta-G solvation = -2928.633942 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.54759 -38.68983 -38.07038 -35.33425 -34.43341 -31.77584 -31.03518 -30.37873 -27.98717 -26.87621 -25.59888 -23.20980 -22.45023 -22.15764 -21.44850 -19.22971 -18.67482 -17.21615 -17.03807 -16.68554 -16.17962 -15.89266 -15.73061 -15.31453 -14.81500 -14.47877 -14.16766 -14.06635 -13.97700 -13.73268 -13.31829 -13.09389 -13.05900 -12.79400 -12.69617 -12.43519 -12.40382 -12.18840 -12.03094 -12.00953 -11.69543 -11.69404 -11.41927 -11.18366 -10.86392 -9.56721 -9.36625 -8.92649 -8.59770 -6.22948 0.94670 1.02125 1.40024 1.50173 1.56183 2.23090 2.49896 2.72648 3.31575 3.69452 3.92484 4.00300 4.13420 4.19275 4.27532 4.30046 4.37298 4.40790 4.45332 4.50556 4.72245 4.77004 4.84383 4.91540 4.97069 5.03205 5.07632 5.13628 5.19894 5.23583 5.26755 5.29857 5.42759 5.59006 5.64831 5.88804 6.05348 6.09358 6.26224 6.46627 6.56641 6.80814 6.94805 7.09959 8.37167 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.066178 B = 0.002691 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.999604 B =10402.750827 C =10633.217014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.074 3.926 3 C -0.136 4.136 4 N -0.693 5.693 5 C 0.071 3.929 6 C -0.104 4.104 7 C 0.062 3.938 8 O -0.339 6.339 9 C -0.001 4.001 10 C -0.165 4.165 11 C -0.209 4.209 12 C 0.055 3.945 13 C -0.499 4.499 14 H 0.076 0.924 15 C 0.032 3.968 16 N -0.831 5.831 17 Si 0.983 3.017 18 H -0.263 1.263 19 H -0.267 1.267 20 H -0.259 1.259 21 C -0.153 4.153 22 C -0.134 4.134 23 H 0.061 0.939 24 H 0.070 0.930 25 H 0.048 0.952 26 H 0.074 0.926 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.346 0.654 31 H 0.073 0.927 32 H 0.039 0.961 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.127 0.873 38 H 0.106 0.894 39 H 0.288 0.712 40 H 0.111 0.889 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.282 15.972 -6.573 18.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.035 4.035 3 C -0.194 4.194 4 N -0.324 5.324 5 C -0.058 4.058 6 C -0.142 4.142 7 C -0.014 4.014 8 O -0.255 6.255 9 C -0.045 4.045 10 C -0.184 4.184 11 C -0.229 4.229 12 C 0.053 3.947 13 C -0.529 4.529 14 H 0.094 0.906 15 C -0.182 4.182 16 N -0.458 5.458 17 Si 0.804 3.196 18 H -0.188 1.188 19 H -0.191 1.191 20 H -0.183 1.183 21 C -0.172 4.172 22 C -0.153 4.153 23 H 0.080 0.920 24 H 0.089 0.911 25 H 0.067 0.933 26 H 0.092 0.908 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.164 0.836 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.145 0.855 38 H 0.124 0.876 39 H 0.098 0.902 40 H 0.128 0.872 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.365 16.192 -6.435 18.550 hybrid contribution -0.769 -1.216 0.084 1.441 sum -7.134 14.976 -6.352 17.763 Atomic orbital electron populations 1.22470 0.96452 1.01783 1.03077 1.21630 0.93258 0.95864 0.92774 1.21738 1.01187 0.94458 1.02028 1.60560 1.58100 1.07122 1.06642 1.21730 0.99715 0.87666 0.96728 1.21357 1.03029 0.90912 0.98896 1.22675 0.98570 0.93405 0.86709 1.85799 1.83348 1.17447 1.38929 1.18688 1.08090 0.81797 0.95897 1.20708 1.05645 0.94957 0.97080 1.20814 1.10438 0.93691 0.97935 1.17963 0.91390 0.94298 0.91098 1.19708 1.20679 0.92240 1.20255 0.90552 1.26759 0.92601 1.05576 0.93218 1.69891 1.11147 1.40508 1.24288 0.85186 0.79772 0.76128 0.78557 1.18791 1.19124 1.18270 1.20904 1.05140 0.92489 0.98712 1.20027 1.04183 0.94070 0.96976 0.92035 0.91107 0.93272 0.90816 0.92922 0.91295 0.92594 0.83568 0.90804 0.94271 0.91025 0.91074 0.92741 0.92462 0.85520 0.87597 0.90186 0.87162 0.87247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.18 9.16 71.98 0.66 -1.52 16 2 C 0.07 1.07 3.20 44.92 0.14 1.21 16 3 C -0.14 -1.75 9.52 71.98 0.69 -1.06 16 4 N -0.69 -11.96 6.25 -491.57 -3.07 -15.03 16 5 C 0.07 1.34 5.48 86.30 0.47 1.82 16 6 C -0.10 -2.46 5.84 30.59 0.18 -2.28 16 7 C 0.06 1.88 4.73 71.98 0.34 2.22 16 8 O -0.34 -13.75 10.12 -89.93 -0.91 -14.66 16 9 C 0.00 -0.04 6.71 22.79 0.15 0.11 16 10 C -0.17 -7.45 8.96 22.11 0.20 -7.25 16 11 C -0.21 -10.45 9.74 22.48 0.22 -10.24 16 12 C 0.05 3.03 5.57 -21.28 -0.12 2.91 16 13 C -0.50 -27.34 9.04 23.40 0.21 -27.13 16 14 H 0.08 4.01 7.91 -2.91 -0.02 3.98 16 15 C 0.03 1.66 5.13 85.23 0.44 2.09 16 16 N -0.83 -44.38 10.97 21.82 0.24 -44.14 16 17 Si 0.98 38.67 29.60 68.60 2.03 40.71 16 18 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 19 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 20 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 21 C -0.15 -8.35 8.64 22.48 0.19 -8.15 16 22 C -0.13 -6.68 9.92 22.11 0.22 -6.47 16 23 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 24 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 25 H 0.05 0.66 7.45 -2.39 -0.02 0.64 16 26 H 0.07 1.11 7.80 -2.39 -0.02 1.09 16 27 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.35 5.43 8.47 -89.69 -0.76 4.67 16 31 H 0.07 1.42 8.06 -2.39 -0.02 1.40 16 32 H 0.04 0.69 7.44 -2.39 -0.02 0.68 16 33 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.05 1.61 7.63 -2.39 -0.02 1.59 16 36 H 0.06 1.63 7.66 -2.39 -0.02 1.61 16 37 H 0.13 4.76 6.27 -2.91 -0.02 4.74 16 38 H 0.11 4.91 8.06 -2.91 -0.02 4.88 16 39 H 0.29 13.84 8.30 -92.71 -0.77 13.07 16 40 H 0.11 6.22 6.18 -2.91 -0.02 6.20 16 41 H 0.11 5.03 8.06 -2.91 -0.02 5.01 16 Total: -1.00 -60.67 336.18 2.52 -58.15 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 0.24 Total: 28.71 kcal Atomic # 6 Polarization: -57.73 SS G_CDS: 4.00 Total: -53.73 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: -2.83 Total: -59.17 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.91 Total: -14.66 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.71 kcal Total: -60.67 2.52 -58.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020525092.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.118 kcal (2) G-P(sol) polarization free energy of solvation -60.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds