Wall clock time and date at job start Mon Mar 30 2020 07:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47178 * 2 1 4 4 N 1.46901 * 109.47391 * 180.02562 * 3 2 1 5 5 C 1.46894 * 110.99978 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47091 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.47184 * 180.02562 * 6 5 4 8 8 O 1.42904 * 109.47099 * 180.02562 * 7 6 5 9 9 C 1.35670 * 117.00011 * 179.97438 * 8 7 6 10 10 C 1.39317 * 119.81652 * 359.72382 * 9 8 7 11 11 C 1.36442 * 120.18330 * 179.76018 * 10 9 8 12 12 C 1.40836 * 119.81102 * 0.51543 * 11 10 9 13 13 C 1.41216 * 120.17949 * 179.72017 * 12 11 10 14 14 H 1.08000 * 119.99881 * 204.56305 * 13 12 11 15 15 C 1.39893 * 119.99776 * 24.56420 * 13 12 11 16 16 N 1.30880 * 120.00328 * 17.92398 * 15 13 12 17 17 Si 1.86801 * 119.99652 * 197.92340 * 15 13 12 18 18 H 1.48505 * 109.46934 * 90.00185 * 17 15 13 19 19 H 1.48495 * 109.46999 * 209.99650 * 17 15 13 20 20 H 1.48499 * 109.47289 * 330.00281 * 17 15 13 21 21 C 1.40840 * 119.64201 * 359.73675 * 12 11 10 22 22 C 1.36437 * 119.81170 * 0.02562 * 21 12 11 23 23 H 1.08999 * 109.47437 * 59.99494 * 1 2 3 24 24 H 1.09000 * 109.46788 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46815 * 299.99527 * 1 2 3 26 26 H 1.09002 * 109.46815 * 240.00473 * 2 1 3 27 27 H 1.08999 * 109.47437 * 120.00506 * 2 1 3 28 28 H 1.09002 * 109.46861 * 60.00501 * 3 2 1 29 29 H 1.08999 * 109.47349 * 300.00559 * 3 2 1 30 30 H 1.00898 * 110.99696 * 303.95309 * 4 3 2 31 31 H 1.09003 * 109.47489 * 59.99952 * 5 4 3 32 32 H 1.09004 * 109.47481 * 300.00154 * 5 4 3 33 33 H 1.09004 * 109.46781 * 60.00270 * 6 5 4 34 34 H 1.09000 * 109.47270 * 299.99733 * 6 5 4 35 35 H 1.08994 * 109.47305 * 59.99872 * 7 6 5 36 36 H 1.09007 * 109.47240 * 299.99558 * 7 6 5 37 37 H 1.07998 * 119.90759 * 0.02562 * 10 9 8 38 38 H 1.08001 * 120.09447 * 180.25025 * 11 10 9 39 39 H 0.96998 * 119.99635 * 180.02562 * 16 15 13 40 40 H 1.07993 * 120.09165 * 179.97438 * 21 12 11 41 41 H 1.07993 * 119.90814 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0354 2.8140 0.0000 6 6 5.5648 2.7732 0.0000 7 6 6.1131 4.2016 0.0012 8 8 7.5416 4.1635 0.0006 9 6 8.1896 5.3555 0.0010 10 6 7.4584 6.5414 -0.0038 11 6 8.1024 7.7443 0.0016 12 6 9.5101 7.7849 0.0010 13 6 10.1846 9.0256 0.0005 14 1 11.1897 9.0937 -0.3887 15 6 9.5507 10.1664 0.5043 16 7 8.5049 10.0446 1.2817 17 14 10.1970 11.8637 0.0672 18 1 9.5308 12.3435 -1.1703 19 1 9.9103 12.8041 1.1801 20 1 11.6634 11.7927 -0.1557 21 6 10.2417 6.5814 0.0005 22 6 9.5824 5.3869 0.0001 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.6767 1.9563 0.8901 29 1 1.6766 1.9564 -0.8899 30 1 3.8709 0.9163 0.7805 31 1 3.6863 3.3368 0.8904 32 1 3.6855 3.3379 -0.8895 33 1 5.9143 2.2503 -0.8903 34 1 5.9144 2.2495 0.8897 35 1 5.7636 4.7242 0.8916 36 1 5.7637 4.7258 -0.8884 37 1 6.3790 6.5084 -0.0074 38 1 7.5341 8.6627 0.0019 39 1 8.0653 10.8357 1.6306 40 1 11.3214 6.6040 -0.0004 41 1 10.1418 4.4631 -0.0007 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020525093.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:24 Heat of formation + Delta-G solvation = -58.408964 kcal Electronic energy + Delta-G solvation = -18539.835725 eV Core-core repulsion = 15611.055294 eV Total energy + Delta-G solvation = -2928.780431 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.54597 -38.48668 -37.83101 -35.37872 -34.72359 -32.18061 -31.53387 -30.79996 -27.45355 -26.46679 -24.69890 -23.24659 -22.62350 -22.22037 -21.60074 -19.27376 -18.62522 -17.44171 -17.17798 -16.67174 -16.36085 -15.79166 -15.67772 -15.40331 -15.08524 -14.77417 -14.20301 -13.99446 -13.93678 -13.68531 -13.51920 -13.14001 -12.92845 -12.78674 -12.77638 -12.40566 -12.38013 -12.20288 -12.03245 -11.77471 -11.64464 -11.60298 -11.42461 -11.21266 -10.86872 -9.57616 -9.44785 -8.92173 -8.60621 -6.23145 0.92821 1.03783 1.39543 1.52455 1.52728 2.22638 2.47843 2.71762 3.28189 3.69418 3.90699 4.03391 4.12466 4.17536 4.23901 4.27783 4.41435 4.42676 4.45917 4.50989 4.66638 4.71380 4.79877 4.86985 4.89702 4.99992 5.10952 5.14630 5.19315 5.19488 5.30120 5.36481 5.40340 5.52482 5.66116 5.97013 6.00587 6.05960 6.23069 6.41106 6.55801 6.79057 6.94593 7.09617 8.36302 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.039461 B = 0.002712 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.385651 B =10321.439962 C =10922.935462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C 0.057 3.943 4 N -0.697 5.697 5 C 0.069 3.931 6 C -0.102 4.102 7 C 0.063 3.937 8 O -0.336 6.336 9 C -0.002 4.002 10 C -0.177 4.177 11 C -0.156 4.156 12 C 0.053 3.947 13 C -0.498 4.498 14 H 0.077 0.923 15 C 0.032 3.968 16 N -0.832 5.832 17 Si 0.983 3.017 18 H -0.263 1.263 19 H -0.269 1.269 20 H -0.258 1.258 21 C -0.204 4.204 22 C -0.122 4.122 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.031 0.969 29 H 0.069 0.931 30 H 0.347 0.653 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.117 0.883 38 H 0.107 0.893 39 H 0.287 0.713 40 H 0.111 0.889 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.845 -12.450 -1.023 17.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.072 4.072 4 N -0.329 5.329 5 C -0.060 4.060 6 C -0.140 4.140 7 C -0.013 4.013 8 O -0.252 6.252 9 C -0.046 4.046 10 C -0.195 4.195 11 C -0.175 4.175 12 C 0.051 3.949 13 C -0.528 4.528 14 H 0.095 0.905 15 C -0.181 4.181 16 N -0.459 5.459 17 Si 0.804 3.196 18 H -0.188 1.188 19 H -0.194 1.194 20 H -0.182 1.182 21 C -0.224 4.224 22 C -0.141 4.141 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.050 0.950 29 H 0.087 0.913 30 H 0.165 0.835 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.134 0.866 38 H 0.125 0.875 39 H 0.097 0.903 40 H 0.129 0.871 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.888 -12.580 -1.558 18.077 hybrid contribution -0.044 1.353 0.915 1.634 sum -12.932 -11.228 -0.643 17.138 Atomic orbital electron populations 1.21723 0.94716 1.02332 1.02000 1.21477 0.96285 0.95448 1.02532 1.22054 0.86666 0.97903 1.00596 1.60431 1.08221 1.13603 1.50656 1.21718 0.92938 0.90208 1.01157 1.21341 0.94915 0.93953 1.03787 1.22647 0.78934 0.98966 1.00762 1.85779 1.20569 1.27983 1.90908 1.18718 0.91810 0.83775 1.10304 1.20824 0.98831 0.92589 1.07297 1.20922 0.94919 0.96307 1.05391 1.17986 0.92545 0.93432 0.90984 1.19722 1.01931 0.93227 1.37915 0.90532 1.26750 0.94400 1.05157 0.91835 1.69894 1.19219 1.33384 1.23373 0.85184 0.79729 0.75810 0.78846 1.18774 1.19381 1.18201 1.20809 0.98630 0.91825 1.11133 1.19924 0.91176 0.97909 1.05085 0.92554 0.91790 0.92610 0.91654 0.91745 0.95034 0.91299 0.83506 0.94551 0.90709 0.90643 0.90906 0.93115 0.92765 0.86559 0.87516 0.90257 0.87090 0.86100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 71.98 0.71 -0.90 16 2 C -0.12 -1.55 6.19 30.60 0.19 -1.36 16 3 C 0.06 0.88 5.69 86.30 0.49 1.37 16 4 N -0.70 -12.61 6.50 -513.89 -3.34 -15.95 16 5 C 0.07 1.39 5.68 86.30 0.49 1.88 16 6 C -0.10 -2.46 5.84 30.59 0.18 -2.29 16 7 C 0.06 1.97 4.73 71.98 0.34 2.31 16 8 O -0.34 -13.61 10.12 -89.86 -0.91 -14.52 16 9 C 0.00 -0.10 6.71 22.79 0.15 0.05 16 10 C -0.18 -8.46 8.96 22.11 0.20 -8.26 16 11 C -0.16 -8.39 8.64 22.49 0.19 -8.19 16 12 C 0.05 2.91 5.57 -21.28 -0.12 2.80 16 13 C -0.50 -27.25 9.04 23.40 0.21 -27.04 16 14 H 0.08 4.03 7.91 -2.91 -0.02 4.00 16 15 C 0.03 1.65 5.13 85.24 0.44 2.09 16 16 N -0.83 -44.08 10.96 21.82 0.24 -43.84 16 17 Si 0.98 38.63 29.60 68.60 2.03 40.66 16 18 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 19 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 20 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 21 C -0.20 -10.32 9.74 22.49 0.22 -10.10 16 22 C -0.12 -5.74 9.92 22.11 0.22 -5.52 16 23 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.35 5.56 8.73 -89.70 -0.78 4.78 16 31 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.05 1.58 7.66 -2.39 -0.02 1.57 16 36 H 0.05 1.67 7.63 -2.38 -0.02 1.65 16 37 H 0.12 4.89 6.27 -2.91 -0.02 4.87 16 38 H 0.11 5.95 6.16 -2.91 -0.02 5.93 16 39 H 0.29 13.72 8.30 -92.71 -0.77 12.95 16 40 H 0.11 5.18 8.06 -2.91 -0.02 5.16 16 41 H 0.12 4.98 8.06 -2.91 -0.02 4.96 16 Total: -1.00 -60.24 338.62 2.15 -58.09 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: 0.21 Total: 28.73 kcal Atomic # 6 Polarization: -57.08 SS G_CDS: 3.92 Total: -53.16 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: -3.10 Total: -59.79 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.91 Total: -14.52 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Total: -60.24 2.15 -58.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020525093.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.321 kcal (2) G-P(sol) polarization free energy of solvation -60.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds