Wall clock time and date at job start Mon Mar 30 2020 06:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47169 * 2 1 4 4 C 1.53000 * 109.47227 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46857 * 55.00057 * 4 3 2 6 6 C 1.53004 * 109.47078 * 295.00007 * 4 3 2 7 7 C 1.53002 * 109.47263 * 174.99686 * 4 3 2 8 8 N 1.46497 * 109.47103 * 184.99963 * 7 4 3 9 9 C 1.39668 * 119.99969 * 180.02562 * 8 7 4 10 10 C 1.39011 * 120.04085 * 359.97438 * 9 8 7 11 11 C 1.38149 * 120.06218 * 180.02562 * 10 9 8 12 12 C 1.38176 * 120.14500 * 359.72293 * 11 10 9 13 13 C 1.38918 * 120.07431 * 0.55384 * 12 11 10 14 14 O 1.35753 * 120.02696 * 179.72007 * 13 12 11 15 15 C 1.34835 * 116.99726 * 174.18640 * 14 13 12 16 16 H 1.08000 * 119.99927 * 5.06436 * 15 14 13 17 17 C 1.38651 * 119.99920 * 185.05751 * 15 14 13 18 18 N 1.31558 * 119.99943 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99837 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47026 * 90.00115 * 19 17 15 21 21 H 1.48508 * 109.46728 * 209.99951 * 19 17 15 22 22 H 1.48500 * 109.47044 * 329.99801 * 19 17 15 23 23 C 1.38757 * 119.94038 * 359.44745 * 13 12 11 24 24 H 1.08995 * 109.47378 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47232 * 300.00472 * 1 2 3 26 26 H 1.09006 * 109.46885 * 59.99996 * 1 2 3 27 27 H 1.09000 * 109.47232 * 239.99528 * 2 1 3 28 28 H 1.09000 * 109.46974 * 119.99569 * 2 1 3 29 29 H 1.09000 * 109.47428 * 59.99648 * 3 2 1 30 30 H 1.08993 * 109.47056 * 299.99929 * 3 2 1 31 31 H 1.08992 * 109.47021 * 299.99823 * 6 4 3 32 32 H 1.08995 * 109.47230 * 60.00037 * 6 4 3 33 33 H 1.09001 * 109.46840 * 179.97438 * 6 4 3 34 34 H 1.08996 * 109.46740 * 65.00577 * 7 4 3 35 35 H 1.08996 * 109.46959 * 305.00275 * 7 4 3 36 36 H 0.97005 * 120.00018 * 0.02562 * 8 7 4 37 37 H 1.07992 * 119.96556 * 0.02562 * 10 9 8 38 38 H 1.08004 * 119.92685 * 180.02562 * 11 10 9 39 39 H 1.07999 * 119.96177 * 180.29756 * 12 11 10 40 40 H 0.97001 * 120.00127 * 180.02562 * 18 17 15 41 41 H 1.08001 * 120.07612 * 180.29913 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9336 0.8529 -0.8409 6 6 4.0795 0.8331 1.3083 7 6 4.0801 2.8795 -0.1252 8 7 5.5401 2.8707 -0.2446 9 6 6.2377 4.0740 -0.3716 10 6 5.5473 5.2805 -0.3853 11 6 6.2368 6.4710 -0.5115 12 6 7.6144 6.4671 -0.6186 13 6 8.3097 5.2645 -0.6114 14 8 9.6627 5.2614 -0.7224 15 6 10.2852 4.0730 -0.5876 16 1 9.7049 3.1683 -0.4820 17 6 11.6704 4.0124 -0.5848 18 7 12.3773 5.1144 -0.7131 19 14 12.5328 2.3658 -0.3988 20 1 12.7572 1.7703 -1.7405 21 1 13.8390 2.5650 0.2791 22 1 11.6879 1.4534 0.4128 23 6 7.6206 4.0668 -0.4848 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6767 1.9563 -0.8899 31 1 3.7158 1.4226 2.1498 32 1 3.7161 -0.1906 1.3979 33 1 5.1695 0.8327 1.3086 34 1 3.7914 3.4462 0.7600 35 1 3.6458 3.3429 -1.0110 36 1 6.0225 2.0291 -0.2355 37 1 4.4710 5.2871 -0.2973 38 1 5.6982 7.4071 -0.5215 39 1 8.1507 7.3997 -0.7123 40 1 13.3464 5.0720 -0.7115 41 1 8.1594 3.1308 -0.4741 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037069410.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:23 Heat of formation + Delta-G solvation = -27.712959 kcal Electronic energy + Delta-G solvation = -19156.312138 eV Core-core repulsion = 16228.862786 eV Total energy + Delta-G solvation = -2927.449352 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.08575 -37.91072 -36.49268 -34.39899 -32.27978 -31.91326 -29.17240 -28.10700 -26.98844 -25.45601 -25.16079 -22.06784 -21.63951 -20.47167 -20.08830 -17.80899 -17.26229 -15.83781 -15.67665 -15.07112 -14.87607 -14.65056 -14.27372 -13.87742 -13.79319 -13.52897 -13.28630 -13.02073 -12.79073 -12.54960 -12.26670 -12.07336 -11.72715 -11.59573 -11.50348 -11.17775 -10.95626 -10.90407 -10.75036 -10.70046 -10.57342 -10.50638 -10.34725 -9.34925 -9.31611 -8.71975 -7.29673 -6.70948 -6.37285 -3.96406 2.43464 2.62862 3.16332 3.17229 3.21631 3.82391 4.02747 4.54364 4.61986 4.73281 4.76053 4.91709 5.04232 5.18562 5.19643 5.41744 5.41889 5.42720 5.51707 5.63656 5.65827 5.72657 5.76140 5.82160 5.87030 5.92984 5.97872 6.04912 6.16103 6.23178 6.33185 6.41904 6.70773 6.71160 7.10024 7.19983 7.44174 7.54241 7.72743 8.08689 8.09476 8.27153 9.08963 9.82281 10.81247 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.022304 B = 0.003869 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.092202 B = 7234.379102 C = 8361.231571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.112 4.112 4 C -0.104 4.104 5 H 0.074 0.926 6 C -0.148 4.148 7 C 0.137 3.863 8 N -0.754 5.754 9 C 0.249 3.751 10 C -0.279 4.279 11 C -0.040 4.040 12 C -0.237 4.237 13 C 0.189 3.811 14 O -0.179 6.179 15 C -0.388 4.388 16 H 0.090 0.910 17 C 0.038 3.962 18 N -0.865 5.865 19 Si 0.939 3.061 20 H -0.274 1.274 21 H -0.278 1.278 22 H -0.269 1.269 23 C -0.303 4.303 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.393 0.607 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.269 0.731 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.978 -8.699 2.036 20.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.150 4.150 4 C -0.122 4.122 5 H 0.092 0.908 6 C -0.205 4.205 7 C 0.012 3.988 8 N -0.386 5.386 9 C 0.148 3.852 10 C -0.302 4.302 11 C -0.059 4.059 12 C -0.258 4.258 13 C 0.135 3.865 14 O -0.083 6.083 15 C -0.465 4.465 16 H 0.108 0.892 17 C -0.166 4.166 18 N -0.501 5.501 19 Si 0.764 3.236 20 H -0.200 1.200 21 H -0.203 1.203 22 H -0.193 1.193 23 C -0.327 4.327 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.228 0.772 37 H 0.121 0.879 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.078 0.922 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -18.756 -8.401 2.005 20.649 hybrid contribution 0.601 -1.201 0.090 1.346 sum -18.155 -9.602 2.095 20.644 Atomic orbital electron populations 1.21780 0.96008 1.01458 1.01791 1.21573 0.95662 0.96932 1.02147 1.21582 0.94135 0.96960 1.02319 1.21371 0.95675 0.96193 0.98990 0.90753 1.21880 1.01379 1.00450 0.96836 1.21218 0.81395 0.95755 1.00471 1.44553 1.04940 1.05857 1.83229 1.17480 0.90433 0.85544 0.91787 1.20073 0.98129 0.91388 1.20630 1.20376 0.93033 0.96525 0.96001 1.20037 0.93531 0.95982 1.16257 1.19068 0.84662 0.92655 0.90130 1.83988 1.13273 1.33485 1.77510 1.21293 0.89560 0.83884 1.51719 0.89236 1.25264 0.95439 0.99070 0.96823 1.70043 1.06643 1.26976 1.46435 0.85742 0.78861 0.80315 0.78650 1.19985 1.20320 1.19328 1.20501 0.92066 0.98885 1.21206 0.92922 0.92781 0.92787 0.92090 0.91754 0.91731 0.91760 0.92563 0.92561 0.92406 0.92817 0.92889 0.77242 0.87924 0.87257 0.86952 0.92160 0.85893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.13 -0.91 5.69 -26.73 -0.15 -1.06 16 3 C -0.11 -0.90 4.68 -26.73 -0.13 -1.02 16 4 C -0.10 -0.98 2.42 -90.62 -0.22 -1.20 16 5 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 6 C -0.15 -1.40 8.82 37.16 0.33 -1.07 16 7 C 0.14 1.65 4.30 -4.04 -0.02 1.63 16 8 N -0.75 -11.51 5.46 -58.65 -0.32 -11.83 16 9 C 0.25 4.81 6.65 -83.81 -0.56 4.25 16 10 C -0.28 -5.15 9.31 -39.33 -0.37 -5.52 16 11 C -0.04 -0.77 10.03 -39.64 -0.40 -1.17 16 12 C -0.24 -5.31 9.99 -39.35 -0.39 -5.70 16 13 C 0.19 4.79 6.64 -39.14 -0.26 4.53 16 14 O -0.18 -5.29 9.76 0.03 0.00 -5.29 16 15 C -0.39 -11.13 9.49 30.89 0.29 -10.84 16 16 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 17 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 18 N -0.87 -25.93 13.67 55.48 0.76 -25.17 16 19 Si 0.94 20.93 29.55 -169.99 -5.02 15.91 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 C -0.30 -6.87 9.01 -39.20 -0.35 -7.22 16 24 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 33 H 0.06 0.61 7.18 -51.93 -0.37 0.23 16 34 H 0.05 0.66 7.95 -51.93 -0.41 0.25 16 35 H 0.05 0.65 7.95 -51.93 -0.41 0.24 16 36 H 0.39 5.63 7.67 -40.82 -0.31 5.32 16 37 H 0.10 1.64 6.72 -52.49 -0.35 1.29 16 38 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 39 H 0.11 2.44 8.06 -52.49 -0.42 2.01 16 40 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.12 2.80 5.64 -52.49 -0.30 2.51 16 LS Contribution 333.20 15.07 5.02 5.02 Total: -1.00 -31.11 333.20 -7.99 -39.10 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -6.48 Total: 6.32 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: -1.95 Total: -24.07 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.44 Total: -36.99 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: 0.00 Total: -5.29 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.11 -7.99 -39.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037069410.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.385 kcal (2) G-P(sol) polarization free energy of solvation -31.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds