Wall clock time and date at job start Mon Mar 30 2020 06:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47169 * 2 1 4 4 C 1.53000 * 109.47227 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46857 * 55.00057 * 4 3 2 6 6 C 1.53004 * 109.47078 * 295.00007 * 4 3 2 7 7 C 1.53002 * 109.47263 * 174.99686 * 4 3 2 8 8 N 1.46497 * 109.47103 * 184.99963 * 7 4 3 9 9 C 1.39668 * 119.99969 * 180.02562 * 8 7 4 10 10 C 1.39011 * 120.04085 * 359.97438 * 9 8 7 11 11 C 1.38149 * 120.06218 * 180.02562 * 10 9 8 12 12 C 1.38176 * 120.14500 * 359.72293 * 11 10 9 13 13 C 1.38918 * 120.07431 * 0.55384 * 12 11 10 14 14 O 1.35753 * 120.02696 * 179.72007 * 13 12 11 15 15 C 1.34835 * 116.99726 * 174.18640 * 14 13 12 16 16 H 1.08000 * 119.99927 * 5.06436 * 15 14 13 17 17 C 1.38651 * 119.99920 * 185.05751 * 15 14 13 18 18 N 1.31558 * 119.99943 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99837 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47026 * 90.00115 * 19 17 15 21 21 H 1.48508 * 109.46728 * 209.99951 * 19 17 15 22 22 H 1.48500 * 109.47044 * 329.99801 * 19 17 15 23 23 C 1.38757 * 119.94038 * 359.44745 * 13 12 11 24 24 H 1.08995 * 109.47378 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47232 * 300.00472 * 1 2 3 26 26 H 1.09006 * 109.46885 * 59.99996 * 1 2 3 27 27 H 1.09000 * 109.47232 * 239.99528 * 2 1 3 28 28 H 1.09000 * 109.46974 * 119.99569 * 2 1 3 29 29 H 1.09000 * 109.47428 * 59.99648 * 3 2 1 30 30 H 1.08993 * 109.47056 * 299.99929 * 3 2 1 31 31 H 1.08992 * 109.47021 * 299.99823 * 6 4 3 32 32 H 1.08995 * 109.47230 * 60.00037 * 6 4 3 33 33 H 1.09001 * 109.46840 * 179.97438 * 6 4 3 34 34 H 1.08996 * 109.46740 * 65.00577 * 7 4 3 35 35 H 1.08996 * 109.46959 * 305.00275 * 7 4 3 36 36 H 0.97005 * 120.00018 * 0.02562 * 8 7 4 37 37 H 1.07992 * 119.96556 * 0.02562 * 10 9 8 38 38 H 1.08004 * 119.92685 * 180.02562 * 11 10 9 39 39 H 1.07999 * 119.96177 * 180.29756 * 12 11 10 40 40 H 0.97001 * 120.00127 * 180.02562 * 18 17 15 41 41 H 1.08001 * 120.07612 * 180.29913 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9336 0.8529 -0.8409 6 6 4.0795 0.8331 1.3083 7 6 4.0801 2.8795 -0.1252 8 7 5.5401 2.8707 -0.2446 9 6 6.2377 4.0740 -0.3716 10 6 5.5473 5.2805 -0.3853 11 6 6.2368 6.4710 -0.5115 12 6 7.6144 6.4671 -0.6186 13 6 8.3097 5.2645 -0.6114 14 8 9.6627 5.2614 -0.7224 15 6 10.2852 4.0730 -0.5876 16 1 9.7049 3.1683 -0.4820 17 6 11.6704 4.0124 -0.5848 18 7 12.3773 5.1144 -0.7131 19 14 12.5328 2.3658 -0.3988 20 1 12.7572 1.7703 -1.7405 21 1 13.8390 2.5650 0.2791 22 1 11.6879 1.4534 0.4128 23 6 7.6206 4.0668 -0.4848 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6767 1.9563 -0.8899 31 1 3.7158 1.4226 2.1498 32 1 3.7161 -0.1906 1.3979 33 1 5.1695 0.8327 1.3086 34 1 3.7914 3.4462 0.7600 35 1 3.6458 3.3429 -1.0110 36 1 6.0225 2.0291 -0.2355 37 1 4.4710 5.2871 -0.2973 38 1 5.6982 7.4071 -0.5215 39 1 8.1507 7.3997 -0.7123 40 1 13.3464 5.0720 -0.7115 41 1 8.1594 3.1308 -0.4741 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037069410.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:23 Heat of formation + Delta-G solvation = -45.848797 kcal Electronic energy + Delta-G solvation = -19157.098567 eV Core-core repulsion = 16228.862786 eV Total energy + Delta-G solvation = -2928.235781 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.77825 -39.16545 -37.88790 -35.59977 -34.21002 -32.95071 -30.76637 -29.65577 -27.71034 -27.25883 -26.40793 -23.46309 -22.81195 -21.82687 -21.00096 -19.69501 -18.97249 -17.21664 -16.73900 -16.58546 -16.17936 -15.88764 -15.67180 -15.47470 -15.27290 -14.77677 -14.41683 -14.17087 -14.04439 -13.93199 -13.48560 -13.25349 -13.00502 -12.74453 -12.55903 -12.45479 -12.37277 -12.16925 -12.04071 -11.92500 -11.56411 -11.46688 -11.31352 -11.20786 -10.92447 -10.59403 -9.09658 -8.44993 -8.21595 -6.13386 0.76970 0.92884 1.34051 1.44647 1.51974 2.18802 2.58019 2.89878 3.27508 3.60189 3.76558 3.93360 4.01539 4.22152 4.29190 4.40783 4.41432 4.51135 4.62090 4.68859 4.73486 4.75619 4.79865 4.92122 4.97467 5.03099 5.06830 5.12231 5.16428 5.17892 5.21557 5.29632 5.37839 5.47926 5.52501 5.53749 5.76033 5.81123 6.05028 6.12536 6.61877 6.87872 7.00319 7.83775 8.78749 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.022304 B = 0.003869 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.092202 B = 7234.379102 C = 8361.231571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.107 4.107 4 C -0.095 4.095 5 H 0.073 0.927 6 C -0.148 4.148 7 C 0.132 3.868 8 N -0.744 5.744 9 C 0.255 3.745 10 C -0.265 4.265 11 C -0.026 4.026 12 C -0.263 4.263 13 C 0.152 3.848 14 O -0.233 6.233 15 C -0.411 4.411 16 H 0.098 0.902 17 C -0.025 4.025 18 N -0.923 5.923 19 Si 1.019 2.981 20 H -0.263 1.263 21 H -0.270 1.270 22 H -0.254 1.254 23 C -0.318 4.318 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.043 0.957 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.398 0.602 37 H 0.141 0.859 38 H 0.152 0.848 39 H 0.106 0.894 40 H 0.272 0.728 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.050 -10.277 2.448 24.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.145 4.145 4 C -0.114 4.114 5 H 0.092 0.908 6 C -0.205 4.205 7 C 0.008 3.992 8 N -0.374 5.374 9 C 0.150 3.850 10 C -0.288 4.288 11 C -0.045 4.045 12 C -0.284 4.284 13 C 0.101 3.899 14 O -0.139 6.139 15 C -0.487 4.487 16 H 0.116 0.884 17 C -0.222 4.222 18 N -0.561 5.561 19 Si 0.838 3.162 20 H -0.188 1.188 21 H -0.195 1.195 22 H -0.178 1.178 23 C -0.341 4.341 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.232 0.768 37 H 0.159 0.841 38 H 0.170 0.830 39 H 0.125 0.875 40 H 0.081 0.919 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -21.915 -10.007 2.422 24.213 hybrid contribution 1.193 -0.676 -0.022 1.371 sum -20.722 -10.683 2.400 23.437 Atomic orbital electron populations 1.21776 0.95439 1.01855 1.01956 1.21561 0.96158 0.96361 1.02154 1.21548 0.92682 0.97600 1.02698 1.21307 0.96734 0.94392 0.98951 0.90840 1.21877 1.00459 1.01360 0.96786 1.21474 0.78993 0.97780 1.00941 1.44727 1.06427 1.04737 1.81525 1.17585 0.89384 0.87620 0.90401 1.20554 0.99944 0.90499 1.17779 1.20832 0.91494 0.98765 0.93365 1.20268 0.95251 0.94931 1.17927 1.19644 0.83783 0.94779 0.91718 1.83949 1.15507 1.34154 1.80280 1.21786 0.90401 0.84330 1.52164 0.88420 1.26594 0.95839 1.03648 0.96082 1.70193 1.07068 1.29913 1.48935 0.84591 0.77512 0.74860 0.79235 1.18774 1.19510 1.17770 1.20510 0.93738 0.97608 1.22294 0.92482 0.92558 0.92689 0.92229 0.91645 0.91314 0.91425 0.92561 0.91248 0.93791 0.92266 0.92170 0.76755 0.84148 0.83009 0.87547 0.91894 0.86981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 71.98 0.71 -0.89 16 2 C -0.12 -1.46 5.69 30.59 0.17 -1.29 16 3 C -0.11 -1.37 4.68 30.59 0.14 -1.23 16 4 C -0.10 -1.52 2.42 -10.79 -0.03 -1.54 16 5 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 6 C -0.15 -2.41 8.82 71.98 0.64 -1.78 16 7 C 0.13 2.72 4.30 86.38 0.37 3.09 16 8 N -0.74 -20.96 5.46 -339.48 -1.85 -22.81 16 9 C 0.25 9.38 6.65 38.20 0.25 9.64 16 10 C -0.27 -8.85 9.31 22.43 0.21 -8.64 16 11 C -0.03 -0.92 10.03 22.23 0.22 -0.70 16 12 C -0.26 -11.94 9.99 22.42 0.22 -11.72 16 13 C 0.15 8.01 6.64 22.56 0.15 8.16 16 14 O -0.23 -14.61 9.76 -22.82 -0.22 -14.84 16 15 C -0.41 -24.77 9.49 67.92 0.64 -24.13 16 16 H 0.10 5.45 5.20 -2.91 -0.02 5.44 16 17 C -0.02 -1.44 5.49 84.83 0.47 -0.97 16 18 N -0.92 -58.08 13.67 21.61 0.30 -57.79 16 19 Si 1.02 43.94 29.55 68.60 2.03 45.96 16 20 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 21 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 22 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 23 C -0.32 -14.66 9.01 22.52 0.20 -14.46 16 24 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.76 6.56 -2.39 -0.02 0.74 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 0.96 6.56 -2.39 -0.02 0.94 16 33 H 0.04 0.84 7.18 -2.39 -0.02 0.82 16 34 H 0.06 1.21 7.95 -2.39 -0.02 1.19 16 35 H 0.06 1.21 7.95 -2.39 -0.02 1.19 16 36 H 0.40 10.72 7.67 -92.70 -0.71 10.01 16 37 H 0.14 3.69 6.72 -2.91 -0.02 3.67 16 38 H 0.15 4.08 8.06 -2.91 -0.02 4.06 16 39 H 0.11 4.82 8.06 -2.91 -0.02 4.79 16 40 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 41 H 0.11 5.29 5.64 -2.91 -0.02 5.28 16 Total: -1.00 -71.74 333.20 4.93 -66.81 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: 0.30 Total: 29.12 kcal Atomic # 6 Polarization: -50.84 SS G_CDS: 4.38 Total: -46.45 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -1.56 Total: -80.60 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.22 Total: -14.84 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -71.74 4.93 -66.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037069410.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.960 kcal (2) G-P(sol) polarization free energy of solvation -71.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds