Wall clock time and date at job start Mon Mar 30 2020 06:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.47125 * 2 1 4 4 H 1.09004 * 109.46625 * 54.59467 * 3 2 1 5 5 N 1.46897 * 109.47504 * 294.59602 * 3 2 1 6 6 C 1.46901 * 111.00411 * 153.57594 * 5 3 2 7 7 C 1.50693 * 109.47041 * 174.59253 * 3 2 1 8 8 C 1.38167 * 120.02635 * 100.00513 * 7 3 2 9 9 C 1.38247 * 120.05514 * 179.97438 * 8 7 3 10 10 C 1.38295 * 120.11237 * 0.02562 * 9 8 7 11 11 C 1.38120 * 120.05428 * 0.02562 * 10 9 8 12 12 C 1.38712 * 120.03035 * 280.02069 * 7 3 2 13 13 O 1.35901 * 120.05332 * 359.96128 * 12 7 3 14 14 C 1.42905 * 116.99746 * 179.97438 * 13 12 7 15 15 C 1.52996 * 109.46886 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47142 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99887 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00308 * 180.02562 * 16 15 14 19 19 N 1.31518 * 120.00053 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00214 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47201 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47138 * 120.00158 * 20 18 16 23 23 H 1.48497 * 109.47256 * 239.99836 * 20 18 16 24 24 H 1.08997 * 109.46974 * 306.32126 * 1 2 3 25 25 H 1.09004 * 109.46789 * 66.32043 * 1 2 3 26 26 H 1.08995 * 109.46678 * 186.32138 * 1 2 3 27 27 H 1.08999 * 109.47157 * 240.00450 * 2 1 3 28 28 H 1.08999 * 109.46957 * 120.00214 * 2 1 3 29 29 H 1.00900 * 110.99793 * 29.62282 * 5 3 2 30 30 H 1.08995 * 109.46998 * 182.65059 * 6 5 3 31 31 H 1.08996 * 109.47116 * 302.65534 * 6 5 3 32 32 H 1.08998 * 109.46627 * 62.64975 * 6 5 3 33 33 H 1.07999 * 119.97484 * 0.02562 * 8 7 3 34 34 H 1.08007 * 119.94426 * 180.02562 * 9 8 7 35 35 H 1.07997 * 119.97152 * 179.74851 * 10 9 8 36 36 H 1.08000 * 120.02481 * 179.97438 * 11 10 9 37 37 H 1.08998 * 109.47368 * 299.99857 * 14 13 12 38 38 H 1.09003 * 109.47069 * 60.00324 * 14 13 12 39 39 H 1.09004 * 109.47512 * 300.00306 * 15 14 13 40 40 H 1.09007 * 109.47316 * 60.00122 * 15 14 13 41 41 H 0.96994 * 120.00297 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5998 1.9835 0.8377 5 7 1.6599 2.0964 -1.2593 6 6 1.5470 3.5506 -1.0843 7 6 3.5410 1.4446 0.1339 8 6 4.3347 1.6163 -0.9840 9 6 5.7117 1.6189 -0.8618 10 6 6.2984 1.4491 0.3790 11 6 5.5095 1.2761 1.4994 12 6 4.1271 1.2739 1.3795 13 8 3.3487 1.1053 2.4806 14 6 4.0206 0.9346 3.7302 15 6 2.9875 0.7613 4.8453 16 6 3.6961 0.5819 6.1631 17 1 4.7754 0.5901 6.2014 18 6 2.9666 0.4061 7.3198 19 7 1.6523 0.3954 7.2731 20 14 3.8449 0.1829 8.9532 21 1 5.3132 0.2328 8.7366 22 1 3.4441 1.2691 9.8832 23 1 3.4757 -1.1310 9.5384 24 1 -0.3633 0.6087 0.8280 25 1 -0.3633 0.4128 -0.9412 26 1 -0.3632 -1.0214 0.1131 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 0.8027 1.7085 -1.6236 30 1 1.2189 4.0046 -2.0193 31 1 0.8209 3.7670 -0.3008 32 1 2.5177 3.9590 -0.8030 33 1 3.8789 1.7495 -1.9540 34 1 6.3304 1.7536 -1.7368 35 1 7.3745 1.4474 0.4712 36 1 5.9682 1.1432 2.4680 37 1 4.6566 0.0506 3.6830 38 1 4.6332 1.8123 3.9362 39 1 2.3518 1.6455 4.8924 40 1 2.3745 -0.1163 4.6395 41 1 1.1390 0.2714 8.0867 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037705117.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:47 Heat of formation + Delta-G solvation = -31.260264 kcal Electronic energy + Delta-G solvation = -19890.784766 eV Core-core repulsion = 16963.181591 eV Total energy + Delta-G solvation = -2927.603175 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.97852 -37.54783 -36.46882 -33.38945 -32.37278 -31.01000 -30.33934 -29.13448 -26.34636 -25.09155 -24.13839 -22.34863 -21.88819 -20.71771 -19.91903 -17.71998 -16.28609 -16.04882 -15.62194 -15.45562 -15.23891 -14.68452 -14.41955 -14.06850 -13.79490 -13.27654 -13.09201 -12.81861 -12.71222 -12.33291 -12.21759 -11.93657 -11.83744 -11.40321 -11.22413 -11.03098 -10.92583 -10.86216 -10.73340 -10.65065 -10.29021 -9.83815 -9.66217 -9.29271 -8.55984 -8.46505 -8.45701 -7.70952 -6.11894 -4.16263 1.62207 1.79499 3.25396 3.32676 3.36327 3.89851 4.05292 4.21225 4.40835 4.91635 5.10224 5.20217 5.24802 5.25272 5.29572 5.38636 5.45234 5.49305 5.66767 5.70699 5.77393 5.86655 5.92320 6.03322 6.04632 6.08704 6.14660 6.22002 6.33462 6.40759 6.58484 6.63335 6.75473 6.80651 7.08638 7.17995 7.38893 7.50663 7.62820 7.81503 8.08225 8.23284 8.89562 9.48259 10.99723 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.020573 B = 0.004732 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.713182 B = 5915.175243 C = 6846.247786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C 0.137 3.863 4 H 0.061 0.939 5 N -0.690 5.690 6 C 0.027 3.973 7 C -0.121 4.121 8 C -0.058 4.058 9 C -0.179 4.179 10 C -0.084 4.084 11 C -0.216 4.216 12 C 0.145 3.855 13 O -0.314 6.314 14 C 0.065 3.935 15 C 0.027 3.973 16 C -0.526 4.526 17 H 0.058 0.942 18 C 0.061 3.939 19 N -0.890 5.890 20 Si 0.898 3.102 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 H 0.057 0.943 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.341 0.659 30 H 0.063 0.937 31 H 0.023 0.977 32 H 0.065 0.935 33 H 0.136 0.864 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.128 0.872 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.026 0.974 40 H 0.027 0.973 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.932 2.470 -17.332 17.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C 0.028 3.972 4 H 0.079 0.921 5 N -0.322 5.322 6 C -0.122 4.122 7 C -0.122 4.122 8 C -0.076 4.076 9 C -0.197 4.197 10 C -0.102 4.102 11 C -0.235 4.235 12 C 0.097 3.903 13 O -0.227 6.227 14 C -0.009 4.009 15 C -0.010 4.010 16 C -0.564 4.564 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.528 5.528 20 Si 0.725 3.275 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.161 0.839 30 H 0.082 0.918 31 H 0.042 0.958 32 H 0.083 0.917 33 H 0.154 0.846 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.146 0.854 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.187 2.478 -17.415 17.726 hybrid contribution -0.057 -0.025 1.639 1.640 sum 2.130 2.453 -15.776 16.107 Atomic orbital electron populations 1.21826 0.95937 1.02171 1.01222 1.21666 0.95415 0.95623 1.03168 1.20217 0.91439 0.94896 0.90668 0.92106 1.60382 1.38996 1.04150 1.28658 1.22218 1.01285 0.88504 1.00221 1.19129 0.95286 1.07283 0.90501 1.20874 0.92405 0.95968 0.98340 1.20982 0.95052 1.06561 0.97145 1.20888 0.99168 0.97794 0.92364 1.21291 0.92859 1.09247 1.00111 1.19046 0.89738 0.94039 0.87441 1.86153 1.36011 1.85523 1.15022 1.23300 0.97811 0.99223 0.80538 1.19106 0.93733 0.98516 0.89686 1.21017 0.93127 1.50776 0.91454 0.92341 1.24983 0.94849 0.94994 0.99318 1.69983 1.05039 1.49363 1.28414 0.86445 0.79818 0.77833 0.83385 1.19628 1.20836 1.20827 0.92436 0.93181 0.92309 0.91461 0.90377 0.83942 0.91797 0.95843 0.91654 0.84626 0.86712 0.86565 0.85446 0.93219 0.93302 0.95548 0.95465 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.63 37.16 0.36 -1.40 16 2 C -0.12 -1.61 5.49 -26.73 -0.15 -1.76 16 3 C 0.14 1.94 1.92 -68.87 -0.13 1.81 16 4 H 0.06 1.00 7.45 -51.93 -0.39 0.61 16 5 N -0.69 -7.93 5.27 -115.25 -0.61 -8.53 16 6 C 0.03 0.30 10.51 60.06 0.63 0.93 16 7 C -0.12 -1.88 4.96 -104.48 -0.52 -2.40 16 8 C -0.06 -0.80 9.33 -39.60 -0.37 -1.17 16 9 C -0.18 -2.35 10.04 -39.56 -0.40 -2.74 16 10 C -0.08 -1.17 10.04 -39.60 -0.40 -1.57 16 11 C -0.22 -3.53 9.04 -39.43 -0.36 -3.89 16 12 C 0.14 2.57 6.66 -39.21 -0.26 2.31 16 13 O -0.31 -6.38 9.27 -19.43 -0.18 -6.56 16 14 C 0.07 1.41 4.68 37.16 0.17 1.58 16 15 C 0.03 0.70 5.34 -27.89 -0.15 0.55 16 16 C -0.53 -14.65 9.11 -34.44 -0.31 -14.96 16 17 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 20 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.47 6.67 -51.93 -0.35 0.12 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.08 1.22 8.04 -51.93 -0.42 0.81 16 29 H 0.34 3.39 6.67 -39.29 -0.26 3.13 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.02 0.26 7.99 -51.93 -0.41 -0.16 16 32 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 33 H 0.14 1.70 7.14 -52.49 -0.37 1.33 16 34 H 0.11 1.21 8.06 -52.48 -0.42 0.79 16 35 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.13 2.05 6.30 -52.49 -0.33 1.72 16 37 H 0.05 1.03 7.66 -51.93 -0.40 0.63 16 38 H 0.05 1.01 7.66 -51.93 -0.40 0.62 16 39 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 335.58 15.07 5.06 5.06 Total: -1.00 -29.51 335.58 -8.66 -38.17 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -6.67 Total: 2.37 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: -1.97 Total: -21.09 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 0.13 Total: -34.18 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.18 Total: -6.56 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.51 -8.66 -38.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037705117.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.914 kcal (2) G-P(sol) polarization free energy of solvation -29.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds