Wall clock time and date at job start Mon Mar 30 2020 06:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.47125 * 2 1 4 4 H 1.09004 * 109.46625 * 54.59467 * 3 2 1 5 5 N 1.46897 * 109.47504 * 294.59602 * 3 2 1 6 6 C 1.46901 * 111.00411 * 153.57594 * 5 3 2 7 7 C 1.50693 * 109.47041 * 174.59253 * 3 2 1 8 8 C 1.38167 * 120.02635 * 100.00513 * 7 3 2 9 9 C 1.38247 * 120.05514 * 179.97438 * 8 7 3 10 10 C 1.38295 * 120.11237 * 0.02562 * 9 8 7 11 11 C 1.38120 * 120.05428 * 0.02562 * 10 9 8 12 12 C 1.38712 * 120.03035 * 280.02069 * 7 3 2 13 13 O 1.35901 * 120.05332 * 359.96128 * 12 7 3 14 14 C 1.42905 * 116.99746 * 179.97438 * 13 12 7 15 15 C 1.52996 * 109.46886 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47142 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99887 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00308 * 180.02562 * 16 15 14 19 19 N 1.31518 * 120.00053 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00214 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47201 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47138 * 120.00158 * 20 18 16 23 23 H 1.48497 * 109.47256 * 239.99836 * 20 18 16 24 24 H 1.08997 * 109.46974 * 306.32126 * 1 2 3 25 25 H 1.09004 * 109.46789 * 66.32043 * 1 2 3 26 26 H 1.08995 * 109.46678 * 186.32138 * 1 2 3 27 27 H 1.08999 * 109.47157 * 240.00450 * 2 1 3 28 28 H 1.08999 * 109.46957 * 120.00214 * 2 1 3 29 29 H 1.00900 * 110.99793 * 29.62282 * 5 3 2 30 30 H 1.08995 * 109.46998 * 182.65059 * 6 5 3 31 31 H 1.08996 * 109.47116 * 302.65534 * 6 5 3 32 32 H 1.08998 * 109.46627 * 62.64975 * 6 5 3 33 33 H 1.07999 * 119.97484 * 0.02562 * 8 7 3 34 34 H 1.08007 * 119.94426 * 180.02562 * 9 8 7 35 35 H 1.07997 * 119.97152 * 179.74851 * 10 9 8 36 36 H 1.08000 * 120.02481 * 179.97438 * 11 10 9 37 37 H 1.08998 * 109.47368 * 299.99857 * 14 13 12 38 38 H 1.09003 * 109.47069 * 60.00324 * 14 13 12 39 39 H 1.09004 * 109.47512 * 300.00306 * 15 14 13 40 40 H 1.09007 * 109.47316 * 60.00122 * 15 14 13 41 41 H 0.96994 * 120.00297 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5998 1.9835 0.8377 5 7 1.6599 2.0964 -1.2593 6 6 1.5470 3.5506 -1.0843 7 6 3.5410 1.4446 0.1339 8 6 4.3347 1.6163 -0.9840 9 6 5.7117 1.6189 -0.8618 10 6 6.2984 1.4491 0.3790 11 6 5.5095 1.2761 1.4994 12 6 4.1271 1.2739 1.3795 13 8 3.3487 1.1053 2.4806 14 6 4.0206 0.9346 3.7302 15 6 2.9875 0.7613 4.8453 16 6 3.6961 0.5819 6.1631 17 1 4.7754 0.5901 6.2014 18 6 2.9666 0.4061 7.3198 19 7 1.6523 0.3954 7.2731 20 14 3.8449 0.1829 8.9532 21 1 5.3132 0.2328 8.7366 22 1 3.4441 1.2691 9.8832 23 1 3.4757 -1.1310 9.5384 24 1 -0.3633 0.6087 0.8280 25 1 -0.3633 0.4128 -0.9412 26 1 -0.3632 -1.0214 0.1131 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 0.8027 1.7085 -1.6236 30 1 1.2189 4.0046 -2.0193 31 1 0.8209 3.7670 -0.3008 32 1 2.5177 3.9590 -0.8030 33 1 3.8789 1.7495 -1.9540 34 1 6.3304 1.7536 -1.7368 35 1 7.3745 1.4474 0.4712 36 1 5.9682 1.1432 2.4680 37 1 4.6566 0.0506 3.6830 38 1 4.6332 1.8123 3.9362 39 1 2.3518 1.6455 4.8924 40 1 2.3745 -0.1163 4.6395 41 1 1.1390 0.2714 8.0867 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037705117.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:46 Heat of formation + Delta-G solvation = -48.136243 kcal Electronic energy + Delta-G solvation = -19891.516563 eV Core-core repulsion = 16963.181591 eV Total energy + Delta-G solvation = -2928.334972 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.26343 -38.87043 -37.61813 -35.48294 -33.38397 -32.55932 -31.78239 -30.51779 -27.42250 -26.99110 -25.16984 -23.88395 -23.08391 -22.25409 -21.15877 -19.24797 -18.19517 -17.29305 -16.95128 -16.73717 -16.57522 -16.46152 -15.72492 -15.19426 -14.92463 -14.45658 -14.34782 -14.31541 -14.15943 -13.95576 -13.37986 -13.15476 -13.02516 -12.89540 -12.79964 -12.61560 -12.49077 -12.19827 -11.93496 -11.80519 -11.70410 -11.58998 -11.51759 -11.32273 -10.64646 -9.69221 -9.48451 -8.99349 -8.28795 -6.42461 0.46800 0.58845 1.39380 1.40148 1.53728 2.27687 2.53302 2.89104 3.05730 3.20643 3.81623 4.05169 4.07191 4.14964 4.16134 4.24723 4.30265 4.38656 4.52476 4.54887 4.59411 4.64096 4.71711 4.74408 4.84644 4.90741 5.04078 5.08200 5.17206 5.23277 5.29948 5.34579 5.44576 5.50076 5.55745 5.67509 5.68048 5.99006 6.04506 6.10022 6.49931 6.60131 6.72332 7.27873 8.84523 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.020573 B = 0.004732 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.713182 B = 5915.175243 C = 6846.247786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.142 3.858 4 H 0.028 0.972 5 N -0.679 5.679 6 C 0.028 3.972 7 C -0.128 4.128 8 C -0.057 4.057 9 C -0.166 4.166 10 C -0.085 4.085 11 C -0.229 4.229 12 C 0.106 3.894 13 O -0.334 6.334 14 C 0.086 3.914 15 C 0.032 3.968 16 C -0.546 4.546 17 H 0.069 0.931 18 C 0.003 3.997 19 N -0.930 5.930 20 Si 0.975 3.025 21 H -0.258 1.258 22 H -0.276 1.276 23 H -0.276 1.276 24 H 0.038 0.962 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.044 0.956 29 H 0.353 0.647 30 H 0.092 0.908 31 H 0.014 0.986 32 H 0.052 0.948 33 H 0.154 0.846 34 H 0.151 0.849 35 H 0.146 0.854 36 H 0.123 0.877 37 H 0.056 0.944 38 H 0.055 0.945 39 H -0.004 1.004 40 H -0.002 1.002 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.635 2.650 -19.077 19.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C 0.032 3.968 4 H 0.046 0.954 5 N -0.312 5.312 6 C -0.121 4.121 7 C -0.129 4.129 8 C -0.075 4.075 9 C -0.184 4.184 10 C -0.103 4.103 11 C -0.248 4.248 12 C 0.060 3.940 13 O -0.249 6.249 14 C 0.011 3.989 15 C -0.005 4.005 16 C -0.584 4.584 17 H 0.087 0.913 18 C -0.195 4.195 19 N -0.570 5.570 20 Si 0.799 3.201 21 H -0.182 1.182 22 H -0.202 1.202 23 H -0.201 1.201 24 H 0.057 0.943 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.173 0.827 30 H 0.110 0.890 31 H 0.033 0.967 32 H 0.071 0.929 33 H 0.172 0.828 34 H 0.169 0.831 35 H 0.164 0.836 36 H 0.141 0.859 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.014 0.986 40 H 0.016 0.984 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.896 2.662 -19.191 19.763 hybrid contribution -0.588 -0.046 2.026 2.110 sum 3.308 2.615 -17.165 17.676 Atomic orbital electron populations 1.21799 0.94476 1.02499 1.01943 1.21597 0.96705 0.94975 1.02159 1.20057 0.90847 0.95120 0.90792 0.95409 1.60359 1.39672 1.04472 1.26665 1.22246 1.00467 0.88023 1.01393 1.19387 0.96219 1.06991 0.90322 1.21129 0.92884 0.95219 0.98220 1.21427 0.95029 1.03942 0.98006 1.21239 1.00513 0.96730 0.91778 1.21426 0.92461 1.09813 1.01088 1.19399 0.90541 0.96916 0.87158 1.86083 1.36780 1.86714 1.15277 1.22807 0.95997 0.99727 0.80351 1.18920 0.94148 0.95715 0.91694 1.21422 0.93802 1.50882 0.92291 0.91301 1.26019 0.95584 0.94273 1.03641 1.70122 1.06889 1.50146 1.29801 0.85250 0.79046 0.77946 0.77905 1.18211 1.20174 1.20134 0.94259 0.90420 0.91640 0.90026 0.93674 0.82676 0.88985 0.96710 0.92892 0.82837 0.83139 0.83643 0.85926 0.92530 0.92717 0.98573 0.98359 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 9.63 71.98 0.69 -2.73 16 2 C -0.12 -3.17 5.49 30.60 0.17 -3.00 16 3 C 0.14 4.08 1.92 44.17 0.08 4.17 16 4 H 0.03 0.98 7.45 -2.38 -0.02 0.96 16 5 N -0.68 -14.64 5.27 -518.55 -2.74 -17.37 16 6 C 0.03 0.58 10.51 127.69 1.34 1.92 16 7 C -0.13 -3.98 4.96 -19.77 -0.10 -4.08 16 8 C -0.06 -1.44 9.33 22.25 0.21 -1.23 16 9 C -0.17 -3.78 10.04 22.29 0.22 -3.56 16 10 C -0.08 -2.15 10.04 22.26 0.22 -1.92 16 11 C -0.23 -7.41 9.04 22.37 0.20 -7.21 16 12 C 0.11 3.86 6.66 22.51 0.15 4.01 16 13 O -0.33 -14.49 9.27 -92.44 -0.86 -15.35 16 14 C 0.09 3.87 4.68 71.98 0.34 4.21 16 15 C 0.03 1.80 5.34 29.85 0.16 1.96 16 16 C -0.55 -31.26 9.11 25.60 0.23 -31.02 16 17 H 0.07 3.71 7.74 -2.91 -0.02 3.68 16 18 C 0.00 0.20 5.46 84.65 0.46 0.66 16 19 N -0.93 -56.89 13.29 21.45 0.28 -56.61 16 20 Si 0.98 43.82 29.54 68.60 2.03 45.84 16 21 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 22 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 23 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 24 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.08 1.32 6.67 -2.39 -0.02 1.31 16 26 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.04 1.51 8.04 -2.39 -0.02 1.49 16 29 H 0.35 6.26 6.67 -89.69 -0.60 5.66 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.01 0.32 7.99 -2.39 -0.02 0.30 16 32 H 0.05 1.21 8.09 -2.39 -0.02 1.19 16 33 H 0.15 3.34 7.14 -2.91 -0.02 3.32 16 34 H 0.15 2.40 8.06 -2.91 -0.02 2.37 16 35 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 36 H 0.12 3.98 6.30 -2.91 -0.02 3.96 16 37 H 0.06 2.43 7.66 -2.39 -0.02 2.41 16 38 H 0.05 2.36 7.66 -2.39 -0.02 2.35 16 39 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 40 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 41 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -66.32 335.58 3.51 -62.82 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.40 Total: 18.50 kcal Atomic # 6 Polarization: -42.21 SS G_CDS: 4.39 Total: -37.83 kcal Atomic # 7 Polarization: -71.53 SS G_CDS: -2.45 Total: -73.98 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.86 Total: -15.35 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -66.32 3.51 -62.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037705117.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.679 kcal (2) G-P(sol) polarization free energy of solvation -66.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds