Wall clock time and date at job start Mon Mar 30 2020 07:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47229 * 2 1 4 4 N 1.46897 * 109.47557 * 180.02562 * 3 2 1 5 5 C 1.46898 * 111.00572 * 175.10756 * 4 3 2 6 6 H 1.09003 * 109.46597 * 328.44633 * 5 4 3 7 7 C 1.52999 * 109.47120 * 88.44035 * 5 4 3 8 8 C 1.53002 * 109.46882 * 57.84587 * 7 5 4 9 9 C 1.50696 * 109.47223 * 208.44136 * 5 4 3 10 10 C 1.38116 * 120.03489 * 339.72908 * 9 5 4 11 11 C 1.38284 * 120.06569 * 179.69679 * 10 9 5 12 12 C 1.38330 * 120.13798 * 0.59806 * 11 10 9 13 13 C 1.38081 * 120.06777 * 359.67673 * 12 11 10 14 14 C 1.38864 * 120.03160 * 160.00014 * 9 5 4 15 15 O 1.35752 * 120.06808 * 359.97438 * 14 9 5 16 16 C 1.34830 * 116.99881 * 185.64641 * 15 14 9 17 17 H 1.08001 * 119.99729 * 4.92128 * 16 15 14 18 18 C 1.38650 * 120.00157 * 184.92227 * 16 15 14 19 19 N 1.31563 * 119.99849 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00041 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47206 * 60.00201 * 20 18 16 22 22 H 1.48504 * 109.47254 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47007 * 299.99606 * 20 18 16 24 24 H 1.08996 * 109.47029 * 59.99955 * 1 2 3 25 25 H 1.08994 * 109.47085 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46536 * 300.00072 * 1 2 3 27 27 H 1.08995 * 109.47158 * 240.00089 * 2 1 3 28 28 H 1.08996 * 109.47029 * 120.00045 * 2 1 3 29 29 H 1.09007 * 109.47372 * 59.99915 * 3 2 1 30 30 H 1.09004 * 109.46951 * 300.00244 * 3 2 1 31 31 H 1.00901 * 110.99582 * 51.15211 * 4 3 2 32 32 H 1.08998 * 109.47356 * 297.84974 * 7 5 4 33 33 H 1.08998 * 109.47491 * 177.84685 * 7 5 4 34 34 H 1.09001 * 109.47117 * 295.37554 * 8 7 5 35 35 H 1.08994 * 109.47077 * 55.38034 * 8 7 5 36 36 H 1.08997 * 109.47212 * 175.37805 * 8 7 5 37 37 H 1.08001 * 119.96805 * 359.97153 * 10 9 5 38 38 H 1.08001 * 119.92976 * 180.27211 * 11 10 9 39 39 H 1.07999 * 119.96407 * 179.69879 * 12 11 10 40 40 H 1.07993 * 120.03269 * 180.02562 * 13 12 11 41 41 H 0.97002 * 119.99678 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0355 2.8090 -0.1176 6 1 3.3478 3.4138 -0.7088 7 6 4.1822 3.4201 1.2773 8 6 5.1051 2.5417 2.1245 9 6 5.3815 2.7725 -0.7942 10 6 6.1113 1.6001 -0.8190 11 6 7.3437 1.5643 -1.4451 12 6 7.8552 2.7049 -2.0375 13 6 7.1329 3.8815 -2.0111 14 6 5.8920 3.9191 -1.3884 15 8 5.1793 5.0742 -1.3613 16 6 5.6771 6.1170 -2.0560 17 1 6.5600 5.9883 -2.6645 18 6 5.0557 7.3546 -1.9891 19 7 3.9799 7.5113 -1.2481 20 14 5.7450 8.7992 -2.9521 21 1 5.7425 8.4745 -4.4011 22 1 4.9044 9.9998 -2.7130 23 1 7.1356 9.0716 -2.5081 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.8703 0.8518 -0.7345 32 1 3.2029 3.4817 1.7519 33 1 4.6086 4.4197 1.1931 34 1 4.6400 1.5678 2.2775 35 1 6.0572 2.4129 1.6098 36 1 5.2754 3.0186 3.0897 37 1 5.7170 0.7093 -0.3528 38 1 7.9105 0.6452 -1.4670 39 1 8.8202 2.6750 -2.5215 40 1 7.5326 4.7715 -2.4742 41 1 3.5453 8.3772 -1.2010 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037705357.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:31 Heat of formation + Delta-G solvation = -18.874026 kcal Electronic energy + Delta-G solvation = -20264.597718 eV Core-core repulsion = 17337.531650 eV Total energy + Delta-G solvation = -2927.066067 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.43403 -37.23276 -36.04297 -34.05991 -32.28493 -30.87735 -29.83578 -28.86529 -25.86774 -25.35201 -24.12920 -21.86124 -21.45495 -20.83798 -19.23220 -17.93462 -16.91310 -15.81725 -15.10512 -15.01670 -14.52055 -14.27696 -14.02746 -13.80640 -13.54114 -13.35648 -13.01011 -12.75062 -12.46019 -12.31419 -11.96721 -11.68500 -11.41666 -11.31203 -11.12901 -10.98653 -10.82740 -10.75084 -10.61752 -10.48345 -10.39842 -10.23987 -10.00112 -9.29203 -8.83503 -8.07172 -7.96149 -7.17961 -6.45255 -4.03742 2.18527 2.40610 3.12818 3.13557 3.16067 3.96282 4.48899 4.57921 5.05095 5.09327 5.15096 5.26598 5.39705 5.46244 5.68022 5.69971 5.77344 5.81738 5.86030 5.89065 6.00309 6.03954 6.06323 6.19258 6.27189 6.29827 6.33757 6.48898 6.58981 6.64482 6.74512 6.86785 6.95943 7.01691 7.07664 7.21329 7.35955 7.39413 7.62091 7.79862 7.86354 8.00148 9.00748 9.70337 10.72357 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.016820 B = 0.006033 C = 0.005027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.287722 B = 4640.000761 C = 5568.761522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.057 3.943 4 N -0.685 5.685 5 C 0.147 3.853 6 H 0.056 0.944 7 C -0.100 4.100 8 C -0.136 4.136 9 C -0.160 4.160 10 C -0.069 4.069 11 C -0.215 4.215 12 C -0.077 4.077 13 C -0.234 4.234 14 C 0.157 3.843 15 O -0.172 6.172 16 C -0.392 4.392 17 H 0.089 0.911 18 C 0.041 3.959 19 N -0.861 5.861 20 Si 0.938 3.062 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.270 1.270 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.028 0.972 31 H 0.337 0.663 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.035 0.965 37 H 0.120 0.880 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.126 0.874 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.113 -10.664 1.683 10.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.073 4.073 4 N -0.317 5.317 5 C 0.038 3.962 6 H 0.074 0.926 7 C -0.138 4.138 8 C -0.194 4.194 9 C -0.162 4.162 10 C -0.087 4.087 11 C -0.234 4.234 12 C -0.096 4.096 13 C -0.253 4.253 14 C 0.103 3.897 15 O -0.076 6.076 16 C -0.469 4.469 17 H 0.107 0.893 18 C -0.163 4.163 19 N -0.496 5.496 20 Si 0.763 3.237 21 H -0.196 1.196 22 H -0.203 1.203 23 H -0.195 1.195 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.156 0.844 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.138 0.862 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.143 0.857 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.461 -10.398 2.540 10.803 hybrid contribution 0.340 1.039 -1.512 1.866 sum -1.121 -9.359 1.028 9.482 Atomic orbital electron populations 1.21727 0.95890 1.01326 1.01883 1.21513 0.95388 0.96888 1.02186 1.22039 0.88445 0.96171 1.00611 1.60724 1.06579 1.11469 1.52893 1.20079 0.92469 0.88092 0.95597 0.92616 1.21362 0.99086 0.99226 0.94106 1.21618 0.99912 0.99804 0.98032 1.18953 0.98319 0.92351 1.06534 1.20550 0.94007 0.96510 0.97636 1.20597 0.98083 0.98020 1.06681 1.20754 0.98208 0.92773 0.97819 1.21138 0.96649 0.99135 1.08397 1.19159 0.90163 0.87559 0.92859 1.83985 1.44479 1.16278 1.62811 1.21250 1.13239 0.87229 1.25160 0.89324 1.25235 0.95958 0.97764 0.97356 1.70025 1.17827 1.24772 1.37004 0.85827 0.78810 0.79610 0.79472 1.19586 1.20300 1.19538 0.92848 0.92884 0.92679 0.92410 0.91344 0.91210 0.95360 0.84356 0.93151 0.91149 0.92345 0.92808 0.94630 0.86176 0.87785 0.87729 0.85677 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 37.16 0.37 -1.13 16 2 C -0.12 -1.38 6.14 -26.73 -0.16 -1.54 16 3 C 0.06 0.80 5.57 -3.83 -0.02 0.78 16 4 N -0.68 -10.64 4.97 -107.95 -0.54 -11.17 16 5 C 0.15 2.82 2.20 -68.87 -0.15 2.66 16 6 H 0.06 1.24 7.38 -51.93 -0.38 0.86 16 7 C -0.10 -1.90 5.82 -26.73 -0.16 -2.06 16 8 C -0.14 -2.30 9.42 37.16 0.35 -1.95 16 9 C -0.16 -3.27 4.19 -104.44 -0.44 -3.71 16 10 C -0.07 -1.22 7.75 -39.61 -0.31 -1.53 16 11 C -0.21 -3.74 10.04 -39.53 -0.40 -4.13 16 12 C -0.08 -1.43 10.04 -39.60 -0.40 -1.83 16 13 C -0.23 -5.10 9.14 -39.40 -0.36 -5.46 16 14 C 0.16 3.72 6.62 -39.11 -0.26 3.46 16 15 O -0.17 -4.74 8.90 0.04 0.00 -4.74 16 16 C -0.39 -10.80 9.45 30.88 0.29 -10.50 16 17 H 0.09 2.28 5.28 -52.49 -0.28 2.00 16 18 C 0.04 1.12 5.49 -17.51 -0.10 1.02 16 19 N -0.86 -24.80 13.67 55.48 0.76 -24.04 16 20 Si 0.94 20.41 29.55 -169.99 -5.02 15.39 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.54 8.14 -51.92 -0.42 0.11 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 1.01 7.85 -51.93 -0.41 0.60 16 30 H 0.03 0.43 7.93 -51.93 -0.41 0.02 16 31 H 0.34 5.02 6.71 -39.29 -0.26 4.76 16 32 H 0.05 0.91 7.85 -51.93 -0.41 0.50 16 33 H 0.07 1.57 8.05 -51.93 -0.42 1.15 16 34 H 0.06 0.92 7.70 -51.93 -0.40 0.52 16 35 H 0.05 0.96 6.38 -51.93 -0.33 0.63 16 36 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.12 1.87 6.65 -52.49 -0.35 1.52 16 38 H 0.10 1.53 8.06 -52.49 -0.42 1.10 16 39 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 40 H 0.13 2.74 5.71 -52.49 -0.30 2.44 16 41 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 330.99 15.07 4.99 4.99 Total: -1.00 -28.52 330.99 -8.02 -36.54 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -6.47 Total: 8.96 kcal Atomic # 6 Polarization: -24.18 SS G_CDS: -1.74 Total: -25.92 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.22 Total: -35.21 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: 0.00 Total: -4.74 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.52 -8.02 -36.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037705357.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.663 kcal (2) G-P(sol) polarization free energy of solvation -28.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds