Wall clock time and date at job start Mon Mar 30 2020 07:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47229 * 2 1 4 4 N 1.46897 * 109.47557 * 180.02562 * 3 2 1 5 5 C 1.46898 * 111.00572 * 175.10756 * 4 3 2 6 6 H 1.09003 * 109.46597 * 328.44633 * 5 4 3 7 7 C 1.52999 * 109.47120 * 88.44035 * 5 4 3 8 8 C 1.53002 * 109.46882 * 57.84587 * 7 5 4 9 9 C 1.50696 * 109.47223 * 208.44136 * 5 4 3 10 10 C 1.38116 * 120.03489 * 339.72908 * 9 5 4 11 11 C 1.38284 * 120.06569 * 179.69679 * 10 9 5 12 12 C 1.38330 * 120.13798 * 0.59806 * 11 10 9 13 13 C 1.38081 * 120.06777 * 359.67673 * 12 11 10 14 14 C 1.38864 * 120.03160 * 160.00014 * 9 5 4 15 15 O 1.35752 * 120.06808 * 359.97438 * 14 9 5 16 16 C 1.34830 * 116.99881 * 185.64641 * 15 14 9 17 17 H 1.08001 * 119.99729 * 4.92128 * 16 15 14 18 18 C 1.38650 * 120.00157 * 184.92227 * 16 15 14 19 19 N 1.31563 * 119.99849 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00041 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47206 * 60.00201 * 20 18 16 22 22 H 1.48504 * 109.47254 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47007 * 299.99606 * 20 18 16 24 24 H 1.08996 * 109.47029 * 59.99955 * 1 2 3 25 25 H 1.08994 * 109.47085 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46536 * 300.00072 * 1 2 3 27 27 H 1.08995 * 109.47158 * 240.00089 * 2 1 3 28 28 H 1.08996 * 109.47029 * 120.00045 * 2 1 3 29 29 H 1.09007 * 109.47372 * 59.99915 * 3 2 1 30 30 H 1.09004 * 109.46951 * 300.00244 * 3 2 1 31 31 H 1.00901 * 110.99582 * 51.15211 * 4 3 2 32 32 H 1.08998 * 109.47356 * 297.84974 * 7 5 4 33 33 H 1.08998 * 109.47491 * 177.84685 * 7 5 4 34 34 H 1.09001 * 109.47117 * 295.37554 * 8 7 5 35 35 H 1.08994 * 109.47077 * 55.38034 * 8 7 5 36 36 H 1.08997 * 109.47212 * 175.37805 * 8 7 5 37 37 H 1.08001 * 119.96805 * 359.97153 * 10 9 5 38 38 H 1.08001 * 119.92976 * 180.27211 * 11 10 9 39 39 H 1.07999 * 119.96407 * 179.69879 * 12 11 10 40 40 H 1.07993 * 120.03269 * 180.02562 * 13 12 11 41 41 H 0.97002 * 119.99678 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0355 2.8090 -0.1176 6 1 3.3478 3.4138 -0.7088 7 6 4.1822 3.4201 1.2773 8 6 5.1051 2.5417 2.1245 9 6 5.3815 2.7725 -0.7942 10 6 6.1113 1.6001 -0.8190 11 6 7.3437 1.5643 -1.4451 12 6 7.8552 2.7049 -2.0375 13 6 7.1329 3.8815 -2.0111 14 6 5.8920 3.9191 -1.3884 15 8 5.1793 5.0742 -1.3613 16 6 5.6771 6.1170 -2.0560 17 1 6.5600 5.9883 -2.6645 18 6 5.0557 7.3546 -1.9891 19 7 3.9799 7.5113 -1.2481 20 14 5.7450 8.7992 -2.9521 21 1 5.7425 8.4745 -4.4011 22 1 4.9044 9.9998 -2.7130 23 1 7.1356 9.0716 -2.5081 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.8703 0.8518 -0.7345 32 1 3.2029 3.4817 1.7519 33 1 4.6086 4.4197 1.1931 34 1 4.6400 1.5678 2.2775 35 1 6.0572 2.4129 1.6098 36 1 5.2754 3.0186 3.0897 37 1 5.7170 0.7093 -0.3528 38 1 7.9105 0.6452 -1.4670 39 1 8.8202 2.6750 -2.5215 40 1 7.5326 4.7715 -2.4742 41 1 3.5453 8.3772 -1.2010 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037705357.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:31 Heat of formation + Delta-G solvation = -35.274647 kcal Electronic energy + Delta-G solvation = -20265.308902 eV Core-core repulsion = 17337.531650 eV Total energy + Delta-G solvation = -2927.777252 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.09658 -38.83731 -37.58204 -35.27712 -34.27135 -32.15958 -31.33598 -30.51468 -27.42349 -27.08620 -25.44558 -23.33202 -23.00802 -22.05956 -20.80941 -19.77030 -18.66745 -17.24847 -16.69808 -16.39942 -16.18772 -15.76258 -15.48931 -15.28535 -15.12170 -15.00794 -14.40952 -14.19051 -13.82638 -13.59310 -13.53691 -13.22620 -12.96807 -12.62383 -12.47791 -12.39733 -12.32462 -12.20223 -12.10768 -11.91825 -11.70659 -11.64702 -11.52299 -11.03609 -10.79013 -9.57838 -9.42360 -8.90455 -8.46044 -6.12798 0.59856 0.79335 1.32876 1.43394 1.48273 2.16807 2.85435 3.16878 3.19399 3.54102 3.84870 4.11166 4.16954 4.22271 4.29687 4.31940 4.41704 4.48229 4.56860 4.66495 4.70007 4.75526 4.79440 4.89346 4.96355 5.09211 5.12789 5.14813 5.18100 5.19981 5.32205 5.34968 5.39062 5.43690 5.55124 5.66858 5.72416 5.80353 6.00623 6.15082 6.29544 6.50557 6.99144 7.81259 8.76295 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.016820 B = 0.006033 C = 0.005027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.287722 B = 4640.000761 C = 5568.761522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C 0.055 3.945 4 N -0.666 5.666 5 C 0.156 3.844 6 H 0.010 0.990 7 C -0.096 4.096 8 C -0.123 4.123 9 C -0.165 4.165 10 C -0.062 4.062 11 C -0.191 4.191 12 C -0.077 4.077 13 C -0.250 4.250 14 C 0.114 3.886 15 O -0.220 6.220 16 C -0.413 4.413 17 H 0.096 0.904 18 C -0.019 4.019 19 N -0.917 5.917 20 Si 1.013 2.987 21 H -0.259 1.259 22 H -0.272 1.272 23 H -0.259 1.259 24 H 0.047 0.953 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.010 0.990 31 H 0.345 0.655 32 H 0.055 0.945 33 H 0.024 0.976 34 H 0.077 0.923 35 H 0.044 0.956 36 H 0.046 0.954 37 H 0.153 0.847 38 H 0.150 0.850 39 H 0.140 0.860 40 H 0.114 0.886 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.446 -13.710 1.562 13.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.074 4.074 4 N -0.299 5.299 5 C 0.047 3.953 6 H 0.028 0.972 7 C -0.134 4.134 8 C -0.180 4.180 9 C -0.166 4.166 10 C -0.080 4.080 11 C -0.209 4.209 12 C -0.095 4.095 13 C -0.269 4.269 14 C 0.064 3.936 15 O -0.126 6.126 16 C -0.489 4.489 17 H 0.113 0.887 18 C -0.217 4.217 19 N -0.555 5.555 20 Si 0.833 3.167 21 H -0.184 1.184 22 H -0.197 1.197 23 H -0.183 1.183 24 H 0.066 0.934 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.028 0.972 31 H 0.165 0.835 32 H 0.074 0.926 33 H 0.043 0.957 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.170 0.830 38 H 0.168 0.832 39 H 0.158 0.842 40 H 0.131 0.869 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.126 -13.505 2.414 13.720 hybrid contribution -0.064 1.690 -1.445 2.224 sum 0.062 -11.816 0.969 11.855 Atomic orbital electron populations 1.21724 0.94858 1.02475 1.01669 1.21449 0.96211 0.94340 1.02972 1.22120 0.87386 0.98384 0.99524 1.60715 1.07519 1.08918 1.52723 1.19813 0.91459 0.89410 0.94660 0.97249 1.21267 0.99746 0.97516 0.94892 1.21510 0.98691 1.00074 0.97721 1.19252 0.98933 0.92450 1.06005 1.20933 0.93986 0.96157 0.96940 1.21177 0.97398 0.99047 1.03321 1.21157 0.99198 0.91701 0.97444 1.21278 0.96546 1.00438 1.08673 1.19776 0.91447 0.87587 0.94833 1.83966 1.46363 1.17559 1.64705 1.21713 1.13578 0.87966 1.25686 0.88653 1.26464 0.96196 1.00581 0.98457 1.70181 1.19977 1.25549 1.39773 0.84729 0.78386 0.75487 0.78146 1.18388 1.19663 1.18305 0.93412 0.91007 0.92668 0.91605 0.90435 0.91808 0.97157 0.83542 0.92617 0.95676 0.90398 0.93672 0.93525 0.82995 0.83239 0.84214 0.86859 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.91 71.98 0.71 -1.98 16 2 C -0.11 -2.28 6.14 30.60 0.19 -2.09 16 3 C 0.06 1.53 5.57 86.30 0.48 2.02 16 4 N -0.67 -20.03 4.97 -495.45 -2.46 -22.49 16 5 C 0.16 6.23 2.20 44.17 0.10 6.33 16 6 H 0.01 0.46 7.38 -2.39 -0.02 0.45 16 7 C -0.10 -3.83 5.82 30.59 0.18 -3.65 16 8 C -0.12 -4.00 9.42 71.98 0.68 -3.32 16 9 C -0.16 -6.79 4.19 -19.74 -0.08 -6.87 16 10 C -0.06 -2.02 7.75 22.25 0.17 -1.84 16 11 C -0.19 -5.75 10.04 22.30 0.22 -5.53 16 12 C -0.08 -2.63 10.04 22.25 0.22 -2.41 16 13 C -0.25 -11.01 9.14 22.39 0.20 -10.81 16 14 C 0.11 5.67 6.62 22.58 0.15 5.82 16 15 O -0.22 -13.07 8.90 -22.76 -0.20 -13.27 16 16 C -0.41 -24.19 9.45 67.92 0.64 -23.55 16 17 H 0.10 5.19 5.28 -2.91 -0.02 5.17 16 18 C -0.02 -1.10 5.49 84.83 0.47 -0.63 16 19 N -0.92 -56.43 13.67 21.61 0.30 -56.13 16 20 Si 1.01 43.41 29.55 68.60 2.03 45.44 16 21 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 24 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 27 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.06 1.85 7.85 -2.38 -0.02 1.83 16 30 H 0.01 0.32 7.93 -2.38 -0.02 0.30 16 31 H 0.34 9.48 6.71 -89.69 -0.60 8.88 16 32 H 0.06 2.10 7.85 -2.39 -0.02 2.08 16 33 H 0.02 1.20 8.05 -2.39 -0.02 1.18 16 34 H 0.08 2.24 7.70 -2.39 -0.02 2.22 16 35 H 0.04 1.53 6.38 -2.39 -0.02 1.52 16 36 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.15 3.99 6.65 -2.91 -0.02 3.97 16 38 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 39 H 0.14 3.80 8.06 -2.91 -0.02 3.77 16 40 H 0.11 5.14 5.71 -2.91 -0.02 5.12 16 41 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -68.08 330.99 4.40 -63.68 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: 0.41 Total: 31.31 kcal Atomic # 6 Polarization: -52.86 SS G_CDS: 4.33 Total: -48.52 kcal Atomic # 7 Polarization: -76.46 SS G_CDS: -2.16 Total: -78.63 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.20 Total: -13.27 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -68.08 4.40 -63.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037705357.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.403 kcal (2) G-P(sol) polarization free energy of solvation -68.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds