Wall clock time and date at job start Mon Mar 30 2020 06:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47306 * 2 1 4 4 H 1.09002 * 109.46765 * 54.99782 * 3 2 1 5 5 N 1.46900 * 109.47185 * 295.00379 * 3 2 1 6 6 C 1.46903 * 110.99491 * 303.17284 * 5 3 2 7 7 C 1.50699 * 109.47471 * 174.99362 * 3 2 1 8 8 C 1.38265 * 119.94189 * 340.24230 * 7 3 2 9 9 C 1.38147 * 120.05152 * 179.72140 * 8 7 3 10 10 C 1.38735 * 119.94139 * 0.54354 * 9 8 7 11 11 O 1.35902 * 120.05344 * 179.74906 * 10 9 8 12 12 C 1.42908 * 117.00004 * 359.97415 * 11 10 9 13 13 C 1.53000 * 109.46924 * 179.97438 * 12 11 10 14 14 C 1.50707 * 109.47004 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99449 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00255 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99995 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99895 * 0.02562 * 16 14 13 19 19 H 1.48508 * 109.47237 * 89.99818 * 18 16 14 20 20 H 1.48500 * 109.47126 * 210.00101 * 18 16 14 21 21 H 1.48506 * 109.46949 * 329.99931 * 18 16 14 22 22 C 1.38726 * 119.89345 * 359.72581 * 10 9 8 23 23 C 1.38149 * 119.94084 * 359.97438 * 22 10 9 24 24 H 1.08995 * 109.47617 * 300.00422 * 1 2 3 25 25 H 1.09007 * 109.46974 * 60.00049 * 1 2 3 26 26 H 1.08999 * 109.47323 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47658 * 240.00360 * 2 1 3 28 28 H 1.08999 * 109.47288 * 120.00125 * 2 1 3 29 29 H 1.00890 * 111.00417 * 67.12663 * 5 3 2 30 30 H 1.08993 * 109.47405 * 66.70737 * 6 5 3 31 31 H 1.08997 * 109.46756 * 186.71048 * 6 5 3 32 32 H 1.08998 * 109.46898 * 306.70385 * 6 5 3 33 33 H 1.07998 * 119.97291 * 359.97438 * 8 7 3 34 34 H 1.08002 * 120.02618 * 180.26457 * 9 8 7 35 35 H 1.08997 * 109.47557 * 300.00142 * 12 11 10 36 36 H 1.09003 * 109.46968 * 60.00305 * 12 11 10 37 37 H 1.08997 * 109.47313 * 299.99951 * 13 12 11 38 38 H 1.09003 * 109.46889 * 60.00452 * 13 12 11 39 39 H 0.97002 * 119.99937 * 180.02562 * 17 16 14 40 40 H 1.08000 * 120.03225 * 179.97438 * 22 10 9 41 41 H 1.07998 * 119.96971 * 180.02562 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 7 1.6513 2.0993 -1.2552 6 6 2.1574 1.3560 -2.4168 7 6 3.5419 1.4444 0.1240 8 6 4.1950 0.3299 0.6170 9 6 5.5721 0.3270 0.7263 10 6 6.2989 1.4477 0.3513 11 8 7.6533 1.4492 0.4626 12 6 8.2635 0.2626 0.9742 13 6 9.7810 0.4510 1.0256 14 6 10.4246 -0.8007 1.5645 15 1 9.8125 -1.6461 1.8421 16 6 11.7948 -0.8665 1.7032 17 7 12.3563 -1.9586 2.1739 18 14 12.8534 0.5960 1.2237 19 1 13.0265 1.4881 2.3983 20 1 14.1823 0.1163 0.7663 21 1 12.1930 1.3462 0.1253 22 6 5.6407 2.5667 -0.1378 23 6 4.2639 2.5623 -0.2509 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.6504 2.2150 -1.3080 30 1 1.6569 0.3896 -2.4760 31 1 1.9594 1.9240 -3.3258 32 1 3.2313 1.2032 -2.3106 33 1 3.6284 -0.5405 0.9132 34 1 6.0822 -0.5453 1.1074 35 1 7.8875 0.0642 1.9778 36 1 8.0241 -0.5786 0.3236 37 1 10.1568 0.6490 0.0218 38 1 10.0208 1.2922 1.6760 39 1 13.3203 -2.0048 2.2718 40 1 6.2042 3.4405 -0.4300 41 1 3.7511 3.4330 -0.6321 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037708694.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:52 Heat of formation + Delta-G solvation = -24.022592 kcal Electronic energy + Delta-G solvation = -19308.581824 eV Core-core repulsion = 16381.292498 eV Total energy + Delta-G solvation = -2927.289326 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.09213 -38.51150 -36.25724 -33.33560 -32.35585 -31.11592 -30.56259 -29.81296 -26.59586 -25.40284 -24.39118 -22.84904 -21.86008 -20.33123 -19.80416 -18.00793 -16.77347 -16.65275 -15.75738 -15.46154 -15.39735 -14.94000 -14.46248 -14.25223 -13.85192 -13.40865 -13.23267 -13.10544 -13.03790 -12.71010 -12.47649 -12.14755 -11.94639 -11.74354 -11.44695 -11.34686 -11.16261 -10.94620 -10.74622 -10.53211 -10.18071 -9.96651 -9.80165 -9.34921 -8.79704 -8.66211 -8.62927 -7.78649 -6.14212 -4.15167 1.54493 1.62186 3.28384 3.35576 3.41271 3.79755 3.89463 4.08816 4.38695 4.54799 4.71369 4.73551 5.04430 5.16925 5.20024 5.20823 5.25361 5.26097 5.34176 5.44770 5.53743 5.67025 5.68721 5.75438 5.85618 5.92195 5.92365 5.96150 5.98731 6.20652 6.39833 6.46626 6.58868 6.65257 6.90221 6.95004 7.11397 7.17069 7.22979 7.62166 7.94084 8.38098 8.86374 9.46168 10.98351 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.041387 B = 0.003337 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.376946 B = 8388.765138 C = 8806.371639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.164 4.164 3 C 0.134 3.866 4 H 0.088 0.912 5 N -0.682 5.682 6 C 0.022 3.978 7 C -0.135 4.135 8 C -0.080 4.080 9 C -0.213 4.213 10 C 0.144 3.856 11 O -0.321 6.321 12 C 0.073 3.927 13 C -0.009 4.009 14 C -0.527 4.527 15 H 0.074 0.926 16 C 0.072 3.928 17 N -0.898 5.898 18 Si 0.881 3.119 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.263 1.263 22 C -0.166 4.166 23 C -0.056 4.056 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.340 0.660 30 H 0.024 0.976 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.122 0.878 34 H 0.130 0.870 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.027 0.973 38 H 0.023 0.977 39 H 0.266 0.734 40 H 0.126 0.874 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.357 6.757 -6.026 25.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.203 4.203 3 C 0.025 3.975 4 H 0.106 0.894 5 N -0.312 5.312 6 C -0.127 4.127 7 C -0.136 4.136 8 C -0.098 4.098 9 C -0.232 4.232 10 C 0.097 3.903 11 O -0.234 6.234 12 C -0.001 4.001 13 C -0.046 4.046 14 C -0.565 4.565 15 H 0.092 0.908 16 C -0.130 4.130 17 N -0.536 5.536 18 Si 0.708 3.292 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.187 1.187 22 C -0.185 4.185 23 C -0.074 4.074 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.158 0.842 30 H 0.042 0.958 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.140 0.860 34 H 0.148 0.852 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.046 0.954 38 H 0.042 0.958 39 H 0.076 0.924 40 H 0.144 0.856 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -22.497 7.262 -6.026 24.396 hybrid contribution 0.075 -0.496 -0.071 0.507 sum -22.422 6.766 -6.097 24.201 Atomic orbital electron populations 1.21785 0.95778 1.01883 1.01587 1.22368 0.95994 0.98733 1.03213 1.20344 0.91995 0.92564 0.92606 0.89429 1.60549 1.17918 1.51090 1.01652 1.22248 1.01495 0.96032 0.92968 1.19487 0.94288 0.94953 1.04826 1.20895 0.93543 0.97554 0.97819 1.21342 0.94945 0.99198 1.07687 1.19225 0.83585 0.93854 0.93663 1.86123 1.16162 1.41654 1.79458 1.23062 0.95775 0.84042 0.97251 1.19584 0.88469 0.98522 0.98062 1.20846 0.92489 0.99343 1.43805 0.90774 1.24933 0.97839 0.95992 0.94248 1.69894 1.11087 1.27228 1.45419 0.86753 0.79729 0.83041 0.79722 1.20037 1.21174 1.18732 1.20491 0.94236 0.97852 1.05922 1.20749 0.92172 0.97920 0.96570 0.92461 0.93093 0.92559 0.91217 0.90837 0.84209 0.95771 0.91810 0.91031 0.86017 0.85232 0.92576 0.92587 0.95426 0.95842 0.92441 0.85583 0.85056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.68 37.15 0.36 -0.62 16 2 C -0.16 -1.32 4.28 -26.73 -0.11 -1.44 16 3 C 0.13 1.23 2.93 -68.86 -0.20 1.03 16 4 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 5 N -0.68 -5.75 5.99 -115.25 -0.69 -6.44 16 6 C 0.02 0.19 9.77 60.07 0.59 0.78 16 7 C -0.13 -1.61 4.34 -104.60 -0.45 -2.06 16 8 C -0.08 -1.03 9.11 -39.60 -0.36 -1.39 16 9 C -0.21 -3.29 9.04 -39.43 -0.36 -3.65 16 10 C 0.14 2.45 6.69 -39.22 -0.26 2.19 16 11 O -0.32 -6.39 10.14 -19.43 -0.20 -6.59 16 12 C 0.07 1.52 4.68 37.16 0.17 1.69 16 13 C -0.01 -0.22 4.41 -27.88 -0.12 -0.34 16 14 C -0.53 -14.93 9.66 -34.44 -0.33 -15.26 16 15 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 16 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 17 N -0.90 -27.38 13.96 55.43 0.77 -26.61 16 18 Si 0.88 21.67 27.47 -169.99 -4.67 17.01 16 19 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 22 C -0.17 -2.47 9.99 -39.43 -0.39 -2.87 16 23 C -0.06 -0.71 8.75 -39.60 -0.35 -1.06 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.30 6.95 -51.93 -0.36 -0.06 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.62 6.23 -51.93 -0.32 0.29 16 28 H 0.07 0.60 6.35 -51.93 -0.33 0.27 16 29 H 0.34 2.28 7.52 -39.30 -0.30 1.99 16 30 H 0.02 0.19 6.54 -51.93 -0.34 -0.15 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.76 6.62 -51.93 -0.34 0.42 16 33 H 0.12 1.32 5.85 -52.49 -0.31 1.01 16 34 H 0.13 2.00 6.30 -52.49 -0.33 1.67 16 35 H 0.06 1.13 7.66 -51.93 -0.40 0.73 16 36 H 0.06 1.13 7.66 -51.93 -0.40 0.73 16 37 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 38 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 39 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 41 H 0.13 1.50 7.73 -52.49 -0.41 1.10 16 LS Contribution 324.20 15.07 4.89 4.89 Total: -1.00 -30.20 324.20 -8.12 -38.32 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.30 Total: 0.43 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -1.92 Total: -21.00 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.08 Total: -33.05 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.20 Total: -6.59 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.20 -8.12 -38.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037708694.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.293 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds