Wall clock time and date at job start Mon Mar 30 2020 06:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47306 * 2 1 4 4 H 1.09002 * 109.46765 * 54.99782 * 3 2 1 5 5 N 1.46900 * 109.47185 * 295.00379 * 3 2 1 6 6 C 1.46903 * 110.99491 * 303.17284 * 5 3 2 7 7 C 1.50699 * 109.47471 * 174.99362 * 3 2 1 8 8 C 1.38265 * 119.94189 * 340.24230 * 7 3 2 9 9 C 1.38147 * 120.05152 * 179.72140 * 8 7 3 10 10 C 1.38735 * 119.94139 * 0.54354 * 9 8 7 11 11 O 1.35902 * 120.05344 * 179.74906 * 10 9 8 12 12 C 1.42908 * 117.00004 * 359.97415 * 11 10 9 13 13 C 1.53000 * 109.46924 * 179.97438 * 12 11 10 14 14 C 1.50707 * 109.47004 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99449 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00255 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99995 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99895 * 0.02562 * 16 14 13 19 19 H 1.48508 * 109.47237 * 89.99818 * 18 16 14 20 20 H 1.48500 * 109.47126 * 210.00101 * 18 16 14 21 21 H 1.48506 * 109.46949 * 329.99931 * 18 16 14 22 22 C 1.38726 * 119.89345 * 359.72581 * 10 9 8 23 23 C 1.38149 * 119.94084 * 359.97438 * 22 10 9 24 24 H 1.08995 * 109.47617 * 300.00422 * 1 2 3 25 25 H 1.09007 * 109.46974 * 60.00049 * 1 2 3 26 26 H 1.08999 * 109.47323 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47658 * 240.00360 * 2 1 3 28 28 H 1.08999 * 109.47288 * 120.00125 * 2 1 3 29 29 H 1.00890 * 111.00417 * 67.12663 * 5 3 2 30 30 H 1.08993 * 109.47405 * 66.70737 * 6 5 3 31 31 H 1.08997 * 109.46756 * 186.71048 * 6 5 3 32 32 H 1.08998 * 109.46898 * 306.70385 * 6 5 3 33 33 H 1.07998 * 119.97291 * 359.97438 * 8 7 3 34 34 H 1.08002 * 120.02618 * 180.26457 * 9 8 7 35 35 H 1.08997 * 109.47557 * 300.00142 * 12 11 10 36 36 H 1.09003 * 109.46968 * 60.00305 * 12 11 10 37 37 H 1.08997 * 109.47313 * 299.99951 * 13 12 11 38 38 H 1.09003 * 109.46889 * 60.00452 * 13 12 11 39 39 H 0.97002 * 119.99937 * 180.02562 * 17 16 14 40 40 H 1.08000 * 120.03225 * 179.97438 * 22 10 9 41 41 H 1.07998 * 119.96971 * 180.02562 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 7 1.6513 2.0993 -1.2552 6 6 2.1574 1.3560 -2.4168 7 6 3.5419 1.4444 0.1240 8 6 4.1950 0.3299 0.6170 9 6 5.5721 0.3270 0.7263 10 6 6.2989 1.4477 0.3513 11 8 7.6533 1.4492 0.4626 12 6 8.2635 0.2626 0.9742 13 6 9.7810 0.4510 1.0256 14 6 10.4246 -0.8007 1.5645 15 1 9.8125 -1.6461 1.8421 16 6 11.7948 -0.8665 1.7032 17 7 12.3563 -1.9586 2.1739 18 14 12.8534 0.5960 1.2237 19 1 13.0265 1.4881 2.3983 20 1 14.1823 0.1163 0.7663 21 1 12.1930 1.3462 0.1253 22 6 5.6407 2.5667 -0.1378 23 6 4.2639 2.5623 -0.2509 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.6504 2.2150 -1.3080 30 1 1.6569 0.3896 -2.4760 31 1 1.9594 1.9240 -3.3258 32 1 3.2313 1.2032 -2.3106 33 1 3.6284 -0.5405 0.9132 34 1 6.0822 -0.5453 1.1074 35 1 7.8875 0.0642 1.9778 36 1 8.0241 -0.5786 0.3236 37 1 10.1568 0.6490 0.0218 38 1 10.0208 1.2922 1.6760 39 1 13.3203 -2.0048 2.2718 40 1 6.2042 3.4405 -0.4300 41 1 3.7511 3.4330 -0.6321 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037708694.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:52 Heat of formation + Delta-G solvation = -42.545021 kcal Electronic energy + Delta-G solvation = -19309.385016 eV Core-core repulsion = 16381.292498 eV Total energy + Delta-G solvation = -2928.092519 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.23678 -39.61721 -37.31819 -35.40298 -33.13191 -32.80270 -31.68918 -30.99003 -27.62289 -26.91446 -25.29320 -23.99240 -23.18132 -21.90267 -20.67050 -19.55803 -18.55462 -17.47940 -16.98789 -16.85185 -16.52776 -16.21804 -15.90140 -15.24705 -14.97694 -14.66419 -14.46407 -14.38546 -14.26383 -13.75913 -13.69236 -13.30031 -13.12033 -12.86192 -12.63191 -12.43246 -12.27045 -12.20571 -11.92256 -11.82192 -11.77378 -11.60351 -11.47547 -11.37085 -10.83328 -9.90339 -9.32713 -8.99204 -8.36809 -6.43822 0.43798 0.48379 1.35082 1.36422 1.49381 2.31890 2.34896 2.81563 2.98217 3.37455 3.76285 3.88474 4.02639 4.09032 4.15521 4.19662 4.25434 4.46846 4.51885 4.54121 4.56236 4.64007 4.65854 4.73582 4.79717 4.91269 5.06871 5.09089 5.13480 5.17415 5.23708 5.27779 5.36692 5.39508 5.45819 5.52328 5.62708 5.93349 6.10159 6.14226 6.51649 6.58252 6.61716 7.21594 8.79013 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.041387 B = 0.003337 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.376946 B = 8388.765138 C = 8806.371639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.162 4.162 3 C 0.137 3.863 4 H 0.099 0.901 5 N -0.683 5.683 6 C 0.025 3.975 7 C -0.122 4.122 8 C -0.080 4.080 9 C -0.224 4.224 10 C 0.106 3.894 11 O -0.337 6.337 12 C 0.088 3.912 13 C -0.006 4.006 14 C -0.538 4.538 15 H 0.041 0.959 16 C 0.014 3.986 17 N -0.942 5.942 18 Si 0.949 3.051 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.251 1.251 22 C -0.170 4.170 23 C -0.052 4.052 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.354 0.646 30 H 0.030 0.970 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.143 0.857 34 H 0.122 0.878 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.271 0.729 40 H 0.132 0.868 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.397 8.436 -6.798 27.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.201 4.201 3 C 0.028 3.972 4 H 0.117 0.883 5 N -0.315 5.315 6 C -0.125 4.125 7 C -0.122 4.122 8 C -0.099 4.099 9 C -0.243 4.243 10 C 0.061 3.939 11 O -0.251 6.251 12 C 0.013 3.987 13 C -0.043 4.043 14 C -0.576 4.576 15 H 0.060 0.940 16 C -0.184 4.184 17 N -0.582 5.582 18 Si 0.772 3.228 19 H -0.189 1.189 20 H -0.204 1.204 21 H -0.175 1.175 22 C -0.189 4.189 23 C -0.070 4.070 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.174 0.826 30 H 0.049 0.951 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.161 0.839 34 H 0.140 0.860 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.046 0.954 38 H 0.045 0.955 39 H 0.080 0.920 40 H 0.150 0.850 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -24.577 8.948 -6.804 27.026 hybrid contribution 0.520 -1.055 0.157 1.187 sum -24.057 7.893 -6.647 26.177 Atomic orbital electron populations 1.21754 0.94281 1.02319 1.02303 1.22325 0.97274 0.97705 1.02752 1.20349 0.89815 0.93636 0.93446 0.88319 1.60497 1.19052 1.50820 1.01102 1.22197 1.00062 0.96703 0.93514 1.19869 0.96074 0.93943 1.02360 1.21143 0.92574 0.98761 0.97392 1.21412 0.96151 0.98592 1.08097 1.19517 0.82437 0.95545 0.96437 1.86031 1.18085 1.40722 1.80292 1.22643 0.93843 0.84719 0.97487 1.19441 0.90755 0.96564 0.97558 1.21113 0.92764 0.99955 1.43766 0.94037 1.25879 0.99347 0.99075 0.94112 1.70024 1.11767 1.29575 1.46844 0.85670 0.77830 0.79283 0.79998 1.18882 1.20359 1.17467 1.20682 0.95199 0.97373 1.05602 1.20963 0.91302 0.98801 0.95955 0.91813 0.92309 0.92329 0.92013 0.91005 0.82648 0.95119 0.90766 0.93286 0.83917 0.86047 0.92545 0.92637 0.95447 0.95504 0.92039 0.85015 0.83274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.68 71.98 0.70 -0.78 16 2 C -0.16 -2.18 4.28 30.59 0.13 -2.05 16 3 C 0.14 2.11 2.93 44.17 0.13 2.24 16 4 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 5 N -0.68 -9.45 5.99 -518.53 -3.11 -12.56 16 6 C 0.02 0.37 9.77 127.69 1.25 1.62 16 7 C -0.12 -2.65 4.34 -19.85 -0.09 -2.74 16 8 C -0.08 -1.97 9.11 22.25 0.20 -1.77 16 9 C -0.22 -6.94 9.04 22.37 0.20 -6.74 16 10 C 0.11 3.64 6.69 22.51 0.15 3.79 16 11 O -0.34 -13.59 10.14 -92.44 -0.94 -14.53 16 12 C 0.09 3.74 4.68 71.98 0.34 4.08 16 13 C -0.01 -0.28 4.41 29.85 0.13 -0.15 16 14 C -0.54 -31.29 9.66 25.60 0.25 -31.04 16 15 H 0.04 2.60 7.99 -2.91 -0.02 2.58 16 16 C 0.01 0.82 5.47 84.65 0.46 1.29 16 17 N -0.94 -58.66 13.96 21.44 0.30 -58.36 16 18 Si 0.95 44.58 27.47 68.60 1.88 46.46 16 19 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 21 H -0.25 -11.22 6.54 99.48 0.65 -10.57 16 22 C -0.17 -4.92 9.99 22.37 0.22 -4.70 16 23 C -0.05 -1.23 8.75 22.25 0.19 -1.04 16 24 H 0.06 0.56 8.14 -2.39 -0.02 0.55 16 25 H 0.06 0.49 6.95 -2.38 -0.02 0.48 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.06 0.95 6.23 -2.39 -0.01 0.93 16 28 H 0.07 1.00 6.35 -2.39 -0.02 0.98 16 29 H 0.35 3.51 7.52 -89.70 -0.67 2.83 16 30 H 0.03 0.42 6.54 -2.39 -0.02 0.40 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.05 0.96 6.62 -2.39 -0.02 0.95 16 33 H 0.14 2.85 5.85 -2.91 -0.02 2.83 16 34 H 0.12 3.87 6.30 -2.91 -0.02 3.86 16 35 H 0.06 2.35 7.66 -2.39 -0.02 2.34 16 36 H 0.06 2.32 7.66 -2.39 -0.02 2.30 16 37 H 0.03 1.34 7.20 -2.39 -0.02 1.32 16 38 H 0.03 1.29 7.57 -2.39 -0.02 1.27 16 39 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 40 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16 41 H 0.15 3.00 7.73 -2.91 -0.02 2.98 16 Total: -1.00 -65.48 324.20 2.70 -62.78 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.29 Total: 14.18 kcal Atomic # 6 Polarization: -42.26 SS G_CDS: 4.27 Total: -37.99 kcal Atomic # 7 Polarization: -68.11 SS G_CDS: -2.81 Total: -70.92 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.94 Total: -14.53 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.88 Total: 46.46 kcal Total: -65.48 2.70 -62.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037708694.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.239 kcal (2) G-P(sol) polarization free energy of solvation -65.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds