Wall clock time and date at job start Mon Mar 30 2020 07:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46545 * 2 1 4 4 N 1.46909 * 109.46805 * 179.97438 * 3 2 1 5 5 C 1.46897 * 110.99686 * 180.02562 * 4 3 2 6 6 H 1.08993 * 109.47596 * 35.00333 * 5 4 3 7 7 C 1.53000 * 109.46936 * 274.99876 * 5 4 3 8 8 C 1.50707 * 109.47051 * 155.00342 * 5 4 3 9 9 C 1.38122 * 120.03338 * 24.99765 * 8 5 4 10 10 C 1.38280 * 120.06971 * 179.97438 * 9 8 5 11 11 C 1.50699 * 119.93216 * 180.02562 * 10 9 8 12 12 C 1.38324 * 120.13441 * 0.04329 * 10 9 8 13 13 C 1.38074 * 120.06880 * 359.97438 * 12 10 9 14 14 C 1.38851 * 120.03406 * 204.72378 * 8 5 4 15 15 O 1.35750 * 120.07196 * 359.97438 * 14 8 5 16 16 C 1.34832 * 117.00401 * 174.13139 * 15 14 8 17 17 H 1.07998 * 119.99448 * 5.06045 * 16 15 14 18 18 C 1.38648 * 120.00282 * 185.06688 * 16 15 14 19 19 N 1.31556 * 120.00001 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00065 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47104 * 59.99887 * 20 18 16 22 22 H 1.48502 * 109.47158 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47169 * 299.99875 * 20 18 16 24 24 H 1.09000 * 109.47024 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47345 * 299.99656 * 1 2 3 26 26 H 1.09000 * 109.47351 * 59.99907 * 1 2 3 27 27 H 1.08999 * 109.47194 * 240.00630 * 2 1 3 28 28 H 1.08996 * 109.46916 * 119.99925 * 2 1 3 29 29 H 1.08996 * 109.47453 * 299.99596 * 3 2 1 30 30 H 1.09002 * 109.47355 * 60.00435 * 3 2 1 31 31 H 1.00900 * 110.99672 * 303.95716 * 4 3 2 32 32 H 1.09000 * 109.47167 * 300.00309 * 7 5 4 33 33 H 1.08999 * 109.47308 * 60.00636 * 7 5 4 34 34 H 1.09000 * 109.47083 * 180.02562 * 7 5 4 35 35 H 1.08003 * 119.96362 * 359.97360 * 9 8 5 36 36 H 1.08998 * 109.46845 * 89.99745 * 11 10 9 37 37 H 1.08995 * 109.47202 * 210.00276 * 11 10 9 38 38 H 1.09000 * 109.46876 * 330.00504 * 11 10 9 39 39 H 1.08002 * 119.95898 * 179.97438 * 12 10 9 40 40 H 1.08006 * 120.02773 * 180.02562 * 13 12 10 41 41 H 0.97000 * 120.00257 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0353 2.8141 0.0013 6 1 3.3794 3.4547 0.5906 7 6 4.1012 3.3356 -1.4356 8 6 5.4173 2.8215 0.6022 9 6 6.1903 1.6772 0.5723 10 6 7.4587 1.6834 1.1231 11 6 8.2996 0.4333 1.0882 12 6 7.9570 2.8344 1.7063 13 6 7.1889 3.9814 1.7396 14 6 5.9170 3.9802 1.1816 15 8 5.1620 5.1081 1.2071 16 6 5.6563 6.1604 1.8901 17 1 6.6475 6.1101 2.3159 18 6 4.8922 7.3067 2.0457 19 7 3.6849 7.3680 1.5266 20 14 5.5768 8.7642 2.9925 21 1 6.8160 9.2461 2.3312 22 1 4.5712 9.8567 3.0146 23 1 5.8878 8.3487 4.3839 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.8702 0.9166 0.7822 32 1 4.7572 2.6949 -2.0249 33 1 3.1017 3.3303 -1.8703 34 1 4.4922 4.3531 -1.4352 35 1 5.8037 0.7768 0.1183 36 1 8.8940 0.4207 0.1746 37 1 8.9625 0.4171 1.9532 38 1 7.6505 -0.4420 1.1114 39 1 8.9478 2.8359 2.1359 40 1 7.5788 4.8799 2.1948 41 1 3.1502 8.1699 1.6358 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037711006.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:23 Heat of formation + Delta-G solvation = -23.047301 kcal Electronic energy + Delta-G solvation = -19978.357612 eV Core-core repulsion = 17051.110578 eV Total energy + Delta-G solvation = -2927.247034 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.40107 -37.06875 -36.35779 -33.75589 -32.36913 -30.87171 -30.09139 -28.52497 -26.13746 -25.06480 -24.75125 -22.63797 -21.36090 -20.55143 -19.34325 -17.94642 -16.86739 -15.79083 -15.15237 -14.80490 -14.51346 -14.08743 -13.94354 -13.61917 -13.44245 -13.23980 -12.94973 -12.90347 -12.63742 -12.18712 -11.92223 -11.79291 -11.68792 -11.47550 -11.24881 -11.15342 -11.00985 -10.81060 -10.69844 -10.55839 -10.46083 -10.37262 -10.14162 -9.26836 -8.80458 -8.09544 -7.97557 -7.06776 -6.45103 -4.03340 2.19134 2.36356 3.12710 3.13476 3.16113 3.96421 4.47294 4.54974 5.06706 5.08364 5.17220 5.28384 5.39861 5.45990 5.57331 5.64498 5.71370 5.82047 5.87239 5.94964 5.97343 6.01714 6.06222 6.16346 6.17565 6.23748 6.28245 6.31716 6.37323 6.50143 6.58619 6.78350 6.90184 6.96872 7.06724 7.21973 7.36345 7.42017 7.61852 7.80186 7.87048 8.00409 9.00912 9.70696 10.72599 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.013760 B = 0.006422 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.458897 B = 4359.239403 C = 6012.428457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C 0.056 3.944 4 N -0.687 5.687 5 C 0.142 3.858 6 H 0.058 0.942 7 C -0.125 4.125 8 C -0.161 4.161 9 C -0.063 4.063 10 C -0.186 4.186 11 C -0.093 4.093 12 C -0.073 4.073 13 C -0.231 4.231 14 C 0.155 3.845 15 O -0.173 6.173 16 C -0.392 4.392 17 H 0.090 0.910 18 C 0.041 3.959 19 N -0.862 5.862 20 Si 0.938 3.062 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.271 1.271 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.028 0.972 31 H 0.338 0.662 32 H 0.052 0.948 33 H 0.045 0.955 34 H 0.062 0.938 35 H 0.121 0.879 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.105 0.895 40 H 0.126 0.874 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.278 -10.964 -1.497 11.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.073 4.073 4 N -0.319 5.319 5 C 0.033 3.967 6 H 0.076 0.924 7 C -0.183 4.183 8 C -0.163 4.163 9 C -0.081 4.081 10 C -0.187 4.187 11 C -0.150 4.150 12 C -0.091 4.091 13 C -0.251 4.251 14 C 0.101 3.899 15 O -0.077 6.077 16 C -0.469 4.469 17 H 0.107 0.893 18 C -0.163 4.163 19 N -0.497 5.497 20 Si 0.763 3.237 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.196 1.196 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.047 0.953 31 H 0.156 0.844 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.139 0.861 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.123 0.877 40 H 0.144 0.856 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.102 -10.783 -2.297 11.025 hybrid contribution 0.292 1.159 1.481 1.904 sum 0.190 -9.624 -0.815 9.660 Atomic orbital electron populations 1.21730 0.95915 1.01323 1.01882 1.21494 0.95287 0.96869 1.02212 1.22025 0.88401 0.96235 1.00662 1.60714 1.06708 1.14818 1.49642 1.20042 0.92230 0.88125 0.96336 0.92384 1.21654 1.00613 1.00889 0.95094 1.18963 0.97314 0.92429 1.07595 1.20443 0.92911 0.96914 0.97877 1.19392 0.96418 0.95799 1.07093 1.20506 0.98507 0.95151 1.00795 1.20632 0.98119 0.92402 0.97996 1.21117 0.95756 0.99491 1.08717 1.19148 0.90309 0.87357 0.93092 1.83971 1.42785 1.17409 1.63523 1.21260 1.01438 0.91280 1.32880 0.89278 1.25237 0.95326 0.98327 0.97450 1.70020 1.08907 1.28790 1.42026 0.85821 0.78550 0.79714 0.79595 1.19531 1.20305 1.19576 0.92876 0.92839 0.92693 0.91358 0.92398 0.91163 0.95329 0.84373 0.92918 0.93629 0.91922 0.86100 0.92847 0.92931 0.92738 0.87700 0.85613 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 37.16 0.37 -1.16 16 2 C -0.12 -1.40 6.19 -26.73 -0.17 -1.57 16 3 C 0.06 0.81 5.48 -3.82 -0.02 0.79 16 4 N -0.69 -11.06 5.57 -107.95 -0.60 -11.66 16 5 C 0.14 2.77 2.55 -68.86 -0.18 2.60 16 6 H 0.06 1.33 7.36 -51.93 -0.38 0.94 16 7 C -0.12 -2.36 9.40 37.16 0.35 -2.01 16 8 C -0.16 -3.37 4.94 -104.43 -0.52 -3.88 16 9 C -0.06 -1.15 8.51 -39.61 -0.34 -1.49 16 10 C -0.19 -3.27 5.88 -104.58 -0.62 -3.88 16 11 C -0.09 -1.26 10.01 36.01 0.36 -0.90 16 12 C -0.07 -1.37 9.69 -39.61 -0.38 -1.76 16 13 C -0.23 -5.08 9.17 -39.40 -0.36 -5.44 16 14 C 0.15 3.71 6.62 -39.11 -0.26 3.45 16 15 O -0.17 -4.82 8.90 0.04 0.00 -4.82 16 16 C -0.39 -10.84 9.49 30.88 0.29 -10.55 16 17 H 0.09 2.30 5.20 -52.49 -0.27 2.02 16 18 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 19 N -0.86 -24.93 13.67 55.48 0.76 -24.17 16 20 Si 0.94 20.46 29.55 -169.99 -5.02 15.44 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 1.04 7.44 -51.93 -0.39 0.65 16 30 H 0.03 0.44 8.05 -51.93 -0.42 0.03 16 31 H 0.34 5.24 7.26 -39.29 -0.29 4.96 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.04 0.79 7.45 -51.93 -0.39 0.40 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.12 1.96 6.97 -52.48 -0.37 1.60 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.65 8.08 -51.93 -0.42 0.23 16 38 H 0.05 0.67 8.08 -51.93 -0.42 0.25 16 39 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 40 H 0.13 2.76 5.64 -52.48 -0.30 2.46 16 41 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 335.41 15.07 5.05 5.05 Total: -1.00 -28.94 335.41 -7.94 -36.89 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -6.57 Total: 8.05 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: -1.56 Total: -24.78 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.16 Total: -35.83 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: 0.00 Total: -4.82 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.94 -7.94 -36.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037711006.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.839 kcal (2) G-P(sol) polarization free energy of solvation -28.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds