Wall clock time and date at job start Mon Mar 30 2020 06:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46811 * 2 1 4 4 H 1.08993 * 109.46955 * 305.00200 * 3 2 1 5 5 N 1.46898 * 109.47006 * 64.99980 * 3 2 1 6 6 C 1.52999 * 109.46626 * 184.99727 * 3 2 1 7 7 C 1.50707 * 109.46980 * 175.00014 * 6 3 2 8 8 C 1.38299 * 119.92900 * 269.73129 * 7 6 3 9 9 C 1.38105 * 120.06714 * 179.72030 * 8 7 6 10 10 C 1.50702 * 120.03479 * 180.26994 * 9 8 7 11 11 C 1.38885 * 119.92828 * 0.52720 * 9 8 7 12 12 O 1.35752 * 120.06501 * 179.71926 * 11 9 8 13 13 C 1.34822 * 117.00281 * 270.02159 * 12 11 9 14 14 H 1.07997 * 120.00342 * 0.02562 * 13 12 11 15 15 C 1.38653 * 119.99921 * 180.02562 * 13 12 11 16 16 N 1.31559 * 120.00053 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00112 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47097 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47250 * 119.99546 * 17 15 13 20 20 H 1.48495 * 109.47210 * 239.99768 * 17 15 13 21 21 C 1.38881 * 119.86220 * 359.74549 * 11 9 8 22 22 C 1.50696 * 120.03322 * 179.97438 * 21 11 9 23 23 C 1.38104 * 119.93056 * 0.02562 * 21 11 9 24 24 H 1.09002 * 109.46911 * 179.97438 * 1 2 3 25 25 H 1.09009 * 109.47170 * 300.00068 * 1 2 3 26 26 H 1.09001 * 109.47273 * 59.99848 * 1 2 3 27 27 H 1.08992 * 109.47188 * 240.00244 * 2 1 3 28 28 H 1.08997 * 109.46828 * 119.99963 * 2 1 3 29 29 H 1.00908 * 111.00028 * 59.99837 * 5 3 2 30 30 H 1.00899 * 110.99915 * 183.95106 * 5 3 2 31 31 H 1.08998 * 109.47903 * 294.99740 * 6 3 2 32 32 H 1.09002 * 109.47016 * 55.00506 * 6 3 2 33 33 H 1.08006 * 119.96850 * 359.97438 * 8 7 6 34 34 H 1.09000 * 109.46960 * 270.25285 * 10 9 8 35 35 H 1.08993 * 109.47041 * 30.25702 * 10 9 8 36 36 H 1.08999 * 109.46888 * 150.25891 * 10 9 8 37 37 H 0.97002 * 119.99815 * 180.02562 * 16 15 13 38 38 H 1.09002 * 109.47119 * 270.02252 * 22 21 11 39 39 H 1.08994 * 109.47327 * 30.02199 * 22 21 11 40 40 H 1.08995 * 109.46810 * 150.02525 * 22 21 11 41 41 H 1.07994 * 119.96358 * 180.02562 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8417 5 7 1.6513 2.0993 1.2552 6 6 3.5648 1.4444 -0.1257 7 6 4.0569 2.8634 -0.2492 8 6 4.1894 3.4415 -1.4985 9 6 4.6347 4.7437 -1.6148 10 6 4.7729 5.3749 -2.9762 11 6 4.9600 5.4690 -0.4759 12 8 5.4034 6.7472 -0.5872 13 6 6.7344 6.9252 -0.7073 14 1 7.3952 6.0709 -0.7121 15 6 7.2549 8.2049 -0.8245 16 7 6.4500 9.2455 -0.8192 17 14 9.0991 8.4515 -0.9916 18 1 9.7789 7.1314 -0.9708 19 1 9.3923 9.1396 -2.2744 20 1 9.5921 9.2795 0.1382 21 6 4.8313 4.8837 0.7770 22 6 5.1837 5.6669 2.0152 23 6 4.3809 3.5827 0.8868 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.0421 1.6179 2.0513 30 1 1.9202 3.0718 1.2529 31 1 4.0029 0.9837 0.7597 32 1 3.8570 0.8801 -1.0113 33 1 3.9405 2.8755 -2.3841 34 1 5.7741 5.1866 -3.3640 35 1 4.0344 4.9449 -3.6527 36 1 4.6104 6.4497 -2.8965 37 1 6.8141 10.1408 -0.9016 38 1 6.2364 5.5152 2.2537 39 1 5.0001 6.7268 1.8392 40 1 4.5695 5.3252 2.8483 41 1 4.2802 3.1272 1.8607 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037723459.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:48 Heat of formation + Delta-G solvation = -34.204109 kcal Electronic energy + Delta-G solvation = -19988.855929 eV Core-core repulsion = 17061.125100 eV Total energy + Delta-G solvation = -2927.730830 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.54959 -37.51792 -35.83172 -32.88827 -32.31776 -31.51904 -30.57408 -27.82795 -26.34245 -26.06454 -24.65612 -23.38384 -20.70979 -20.21933 -19.78871 -17.87546 -16.41121 -16.25893 -15.62014 -14.81558 -14.47590 -14.28031 -13.84763 -13.68634 -13.38452 -13.24249 -12.71274 -12.48980 -12.42177 -12.35065 -12.20172 -11.85170 -11.64633 -11.48694 -11.37872 -11.11323 -11.01531 -10.89356 -10.83051 -10.67822 -10.44694 -10.33341 -9.83656 -9.59287 -8.67089 -8.20535 -7.97603 -7.48212 -6.08566 -3.76703 1.93900 1.95467 3.23119 3.27670 3.31592 4.08574 4.36745 4.62246 4.74007 5.01407 5.18568 5.21111 5.25417 5.31277 5.38583 5.53266 5.62437 5.67154 5.73194 5.77906 5.83739 5.91587 5.96068 6.03577 6.17735 6.20903 6.25770 6.29383 6.36932 6.39246 6.46167 6.73394 6.80541 7.02515 7.04125 7.12270 7.22428 7.37628 7.44381 7.50939 7.66815 8.29497 9.35289 10.10201 11.11100 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.036369 B = 0.004439 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.696528 B = 6305.549859 C = 6584.109997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C 0.096 3.904 4 H 0.080 0.920 5 N -0.841 5.841 6 C -0.106 4.106 7 C -0.115 4.115 8 C -0.115 4.115 9 C -0.109 4.109 10 C -0.101 4.101 11 C 0.139 3.861 12 O -0.236 6.236 13 C -0.356 4.356 14 H 0.066 0.934 15 C 0.029 3.971 16 N -0.883 5.883 17 Si 0.926 3.074 18 H -0.273 1.273 19 H -0.281 1.281 20 H -0.281 1.281 21 C -0.109 4.109 22 C -0.101 4.101 23 C -0.121 4.121 24 H 0.044 0.956 25 H 0.066 0.934 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.333 0.667 30 H 0.347 0.653 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.111 0.889 34 H 0.063 0.937 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.260 0.740 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.049 0.951 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.227 -15.128 1.703 16.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C -0.016 4.016 4 H 0.098 0.902 5 N -0.371 5.371 6 C -0.146 4.146 7 C -0.115 4.115 8 C -0.133 4.133 9 C -0.110 4.110 10 C -0.158 4.158 11 C 0.094 3.906 12 O -0.149 6.149 13 C -0.433 4.433 14 H 0.084 0.916 15 C -0.170 4.170 16 N -0.525 5.525 17 Si 0.753 3.247 18 H -0.198 1.198 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.110 4.110 22 C -0.158 4.158 23 C -0.139 4.139 24 H 0.063 0.937 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.145 0.855 30 H 0.162 0.838 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.129 0.871 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.068 0.932 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.089 -14.938 1.474 16.601 hybrid contribution 2.174 0.158 0.007 2.180 sum -4.915 -14.781 1.482 15.647 Atomic orbital electron populations 1.21663 0.95355 1.00510 1.02588 1.21551 0.96666 0.95620 1.01463 1.21485 0.91720 0.94888 0.93551 0.90200 1.58993 1.66918 1.07573 1.03602 1.21331 0.97177 0.93694 1.02354 1.19505 1.03135 0.95580 0.93305 1.20622 1.01885 0.94493 0.96301 1.20403 1.00759 0.93624 0.96226 1.20556 1.00823 1.02207 0.92205 1.18875 0.94598 0.86696 0.90475 1.83808 1.23401 1.16528 1.91188 1.20833 0.78766 0.92796 1.50884 0.91642 1.24971 0.98860 0.94541 0.98642 1.70027 1.33807 0.97956 1.50674 0.85873 0.82562 0.78359 0.77939 1.19786 1.20679 1.20687 1.20377 1.00653 0.94053 0.95894 1.20552 1.00647 1.01277 0.93295 1.20592 1.02296 0.93946 0.97063 0.93732 0.91531 0.93180 0.92015 0.92350 0.85491 0.83840 0.91754 0.91230 0.87083 0.91827 0.93136 0.90229 0.92983 0.91862 0.90216 0.93155 0.87357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.80 37.16 0.36 -0.98 16 2 C -0.12 -1.08 5.58 -26.73 -0.15 -1.23 16 3 C 0.10 1.06 2.79 -67.71 -0.19 0.87 16 4 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 5 N -0.84 -9.44 8.57 -4.67 -0.04 -9.48 16 6 C -0.11 -1.26 4.99 -27.88 -0.14 -1.40 16 7 C -0.12 -1.78 4.73 -104.57 -0.49 -2.27 16 8 C -0.11 -1.96 9.35 -39.61 -0.37 -2.33 16 9 C -0.11 -2.24 5.90 -104.43 -0.62 -2.85 16 10 C -0.10 -1.96 9.77 36.01 0.35 -1.61 16 11 C 0.14 3.22 5.54 -39.10 -0.22 3.01 16 12 O -0.24 -6.54 7.79 0.07 0.00 -6.54 16 13 C -0.36 -10.00 9.77 30.89 0.30 -9.70 16 14 H 0.07 1.81 7.76 -52.49 -0.41 1.40 16 15 C 0.03 0.82 5.49 -17.52 -0.10 0.72 16 16 N -0.88 -26.54 13.67 55.48 0.76 -25.78 16 17 Si 0.93 21.48 29.55 -169.99 -5.02 16.45 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 C -0.11 -2.20 5.90 -104.44 -0.62 -2.81 16 22 C -0.10 -1.93 9.77 36.00 0.35 -1.58 16 23 C -0.12 -1.99 8.03 -39.61 -0.32 -2.31 16 24 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 0.68 7.75 -51.92 -0.40 0.28 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.33 3.28 9.00 -39.29 -0.35 2.93 16 30 H 0.35 4.39 7.32 -39.29 -0.29 4.10 16 31 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 32 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 33 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.05 0.81 8.09 -51.93 -0.42 0.39 16 36 H 0.08 1.76 7.54 -51.93 -0.39 1.37 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.08 1.75 7.54 -51.93 -0.39 1.36 16 40 H 0.05 0.78 8.09 -51.93 -0.42 0.36 16 41 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 338.98 15.07 5.11 5.11 Total: -1.00 -30.16 338.98 -7.88 -38.05 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -6.85 Total: 6.66 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: -1.83 Total: -24.47 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.72 Total: -35.26 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: 0.00 Total: -6.54 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.16 -7.88 -38.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037723459.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.844 kcal (2) G-P(sol) polarization free energy of solvation -30.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds