Wall clock time and date at job start Mon Mar 30 2020 06:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46811 * 2 1 4 4 H 1.08993 * 109.46955 * 305.00200 * 3 2 1 5 5 N 1.46898 * 109.47006 * 64.99980 * 3 2 1 6 6 C 1.52999 * 109.46626 * 184.99727 * 3 2 1 7 7 C 1.50707 * 109.46980 * 175.00014 * 6 3 2 8 8 C 1.38299 * 119.92900 * 269.73129 * 7 6 3 9 9 C 1.38105 * 120.06714 * 179.72030 * 8 7 6 10 10 C 1.50702 * 120.03479 * 180.26994 * 9 8 7 11 11 C 1.38885 * 119.92828 * 0.52720 * 9 8 7 12 12 O 1.35752 * 120.06501 * 179.71926 * 11 9 8 13 13 C 1.34822 * 117.00281 * 270.02159 * 12 11 9 14 14 H 1.07997 * 120.00342 * 0.02562 * 13 12 11 15 15 C 1.38653 * 119.99921 * 180.02562 * 13 12 11 16 16 N 1.31559 * 120.00053 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00112 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47097 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47250 * 119.99546 * 17 15 13 20 20 H 1.48495 * 109.47210 * 239.99768 * 17 15 13 21 21 C 1.38881 * 119.86220 * 359.74549 * 11 9 8 22 22 C 1.50696 * 120.03322 * 179.97438 * 21 11 9 23 23 C 1.38104 * 119.93056 * 0.02562 * 21 11 9 24 24 H 1.09002 * 109.46911 * 179.97438 * 1 2 3 25 25 H 1.09009 * 109.47170 * 300.00068 * 1 2 3 26 26 H 1.09001 * 109.47273 * 59.99848 * 1 2 3 27 27 H 1.08992 * 109.47188 * 240.00244 * 2 1 3 28 28 H 1.08997 * 109.46828 * 119.99963 * 2 1 3 29 29 H 1.00908 * 111.00028 * 59.99837 * 5 3 2 30 30 H 1.00899 * 110.99915 * 183.95106 * 5 3 2 31 31 H 1.08998 * 109.47903 * 294.99740 * 6 3 2 32 32 H 1.09002 * 109.47016 * 55.00506 * 6 3 2 33 33 H 1.08006 * 119.96850 * 359.97438 * 8 7 6 34 34 H 1.09000 * 109.46960 * 270.25285 * 10 9 8 35 35 H 1.08993 * 109.47041 * 30.25702 * 10 9 8 36 36 H 1.08999 * 109.46888 * 150.25891 * 10 9 8 37 37 H 0.97002 * 119.99815 * 180.02562 * 16 15 13 38 38 H 1.09002 * 109.47119 * 270.02252 * 22 21 11 39 39 H 1.08994 * 109.47327 * 30.02199 * 22 21 11 40 40 H 1.08995 * 109.46810 * 150.02525 * 22 21 11 41 41 H 1.07994 * 119.96358 * 180.02562 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8417 5 7 1.6513 2.0993 1.2552 6 6 3.5648 1.4444 -0.1257 7 6 4.0569 2.8634 -0.2492 8 6 4.1894 3.4415 -1.4985 9 6 4.6347 4.7437 -1.6148 10 6 4.7729 5.3749 -2.9762 11 6 4.9600 5.4690 -0.4759 12 8 5.4034 6.7472 -0.5872 13 6 6.7344 6.9252 -0.7073 14 1 7.3952 6.0709 -0.7121 15 6 7.2549 8.2049 -0.8245 16 7 6.4500 9.2455 -0.8192 17 14 9.0991 8.4515 -0.9916 18 1 9.7789 7.1314 -0.9708 19 1 9.3923 9.1396 -2.2744 20 1 9.5921 9.2795 0.1382 21 6 4.8313 4.8837 0.7770 22 6 5.1837 5.6669 2.0152 23 6 4.3809 3.5827 0.8868 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.0421 1.6179 2.0513 30 1 1.9202 3.0718 1.2529 31 1 4.0029 0.9837 0.7597 32 1 3.8570 0.8801 -1.0113 33 1 3.9405 2.8755 -2.3841 34 1 5.7741 5.1866 -3.3640 35 1 4.0344 4.9449 -3.6527 36 1 4.6104 6.4497 -2.8965 37 1 6.8141 10.1408 -0.9016 38 1 6.2364 5.5152 2.2537 39 1 5.0001 6.7268 1.8392 40 1 4.5695 5.3252 2.8483 41 1 4.2802 3.1272 1.8607 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037723459.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:48 Heat of formation + Delta-G solvation = -52.421231 kcal Electronic energy + Delta-G solvation = -19989.645883 eV Core-core repulsion = 17061.125100 eV Total energy + Delta-G solvation = -2928.520783 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.03883 -38.84779 -37.23626 -34.39147 -34.12791 -32.93395 -31.58201 -29.03282 -27.98887 -27.51925 -26.47592 -24.47690 -21.80279 -21.59969 -21.04137 -19.82903 -18.26157 -17.32424 -16.93614 -16.25569 -15.79199 -15.65091 -15.18127 -15.00208 -14.83357 -14.21354 -14.12342 -14.02793 -13.80958 -13.66486 -13.54862 -13.44671 -13.24553 -12.84574 -12.75111 -12.65379 -12.31548 -12.22680 -12.08085 -11.98029 -11.71081 -11.57569 -11.48870 -11.31069 -10.29702 -9.61786 -9.40374 -8.99497 -8.21664 -5.94868 0.46093 0.49186 1.36304 1.40443 1.51409 2.27509 2.78555 3.10878 3.74714 3.77707 3.89628 3.95630 4.04927 4.16053 4.35109 4.36794 4.43825 4.49369 4.59061 4.71645 4.74522 4.77795 4.81264 4.84520 4.89468 4.99483 5.06679 5.08315 5.13347 5.18366 5.22315 5.34230 5.43463 5.47510 5.57801 5.62104 5.69587 5.92101 6.13505 6.20704 6.34542 6.67282 7.20822 8.13088 9.01539 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.036369 B = 0.004439 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.696528 B = 6305.549859 C = 6584.109997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 C 0.100 3.900 4 H 0.065 0.935 5 N -0.845 5.845 6 C -0.100 4.100 7 C -0.096 4.096 8 C -0.113 4.113 9 C -0.128 4.128 10 C -0.095 4.095 11 C 0.079 3.921 12 O -0.271 6.271 13 C -0.357 4.357 14 H 0.061 0.939 15 C -0.032 4.032 16 N -0.933 5.933 17 Si 1.000 3.000 18 H -0.261 1.261 19 H -0.274 1.274 20 H -0.273 1.273 21 C -0.125 4.125 22 C -0.094 4.094 23 C -0.110 4.110 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.043 0.957 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.343 0.657 30 H 0.339 0.661 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.141 0.859 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.038 0.962 37 H 0.262 0.738 38 H 0.060 0.940 39 H 0.037 0.963 40 H 0.088 0.912 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.123 -18.616 2.065 19.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.148 4.148 3 C -0.012 4.012 4 H 0.083 0.917 5 N -0.375 5.375 6 C -0.139 4.139 7 C -0.096 4.096 8 C -0.131 4.131 9 C -0.128 4.128 10 C -0.151 4.151 11 C 0.035 3.965 12 O -0.185 6.185 13 C -0.433 4.433 14 H 0.079 0.921 15 C -0.226 4.226 16 N -0.577 5.577 17 Si 0.822 3.178 18 H -0.185 1.185 19 H -0.199 1.199 20 H -0.199 1.199 21 C -0.126 4.126 22 C -0.151 4.151 23 C -0.128 4.128 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.157 0.843 30 H 0.152 0.848 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.159 0.841 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.056 0.944 40 H 0.106 0.894 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.998 -18.465 1.844 19.833 hybrid contribution 1.999 1.067 -0.079 2.267 sum -4.999 -17.399 1.765 18.189 Atomic orbital electron populations 1.21643 0.95559 1.01087 1.01747 1.21524 0.96413 0.94341 1.02538 1.21448 0.90957 0.95869 0.92943 0.91706 1.58971 1.67202 1.07112 1.04200 1.21392 0.97577 0.90970 1.03999 1.19966 1.00245 0.97199 0.92223 1.20941 1.00702 0.93080 0.98335 1.20565 1.01619 0.95090 0.95550 1.20479 1.01782 0.99804 0.93055 1.19358 0.97952 0.86343 0.92823 1.83794 1.23150 1.19927 1.91614 1.21091 0.79647 0.92858 1.49753 0.92080 1.26101 1.04124 0.93994 0.98374 1.70184 1.36360 0.98509 1.52673 0.84778 0.76124 0.78716 0.78194 1.18511 1.19902 1.19873 1.20544 1.01452 0.95692 0.94865 1.20480 1.01235 0.98825 0.94558 1.20881 1.00595 0.92257 0.99109 0.92486 0.92637 0.93771 0.90832 0.91357 0.84339 0.84827 0.90027 0.89663 0.84111 0.92081 0.89596 0.94317 0.92886 0.92173 0.94362 0.89361 0.84043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.80 71.98 0.71 -1.56 16 2 C -0.11 -1.63 5.58 30.60 0.17 -1.45 16 3 C 0.10 1.84 2.79 44.92 0.13 1.97 16 4 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 5 N -0.85 -16.37 8.57 -168.68 -1.45 -17.81 16 6 C -0.10 -1.92 4.99 29.85 0.15 -1.77 16 7 C -0.10 -2.67 4.73 -19.83 -0.09 -2.76 16 8 C -0.11 -3.60 9.35 22.25 0.21 -3.39 16 9 C -0.13 -5.27 5.90 -19.74 -0.12 -5.39 16 10 C -0.09 -3.76 9.77 71.24 0.70 -3.06 16 11 C 0.08 3.82 5.54 22.58 0.13 3.95 16 12 O -0.27 -15.98 7.79 -22.68 -0.18 -16.16 16 13 C -0.36 -21.01 9.77 67.92 0.66 -20.35 16 14 H 0.06 3.51 7.76 -2.91 -0.02 3.49 16 15 C -0.03 -1.88 5.49 84.83 0.47 -1.41 16 16 N -0.93 -58.86 13.67 21.61 0.30 -58.56 16 17 Si 1.00 45.16 29.55 68.60 2.03 47.19 16 18 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 21 C -0.12 -5.05 5.90 -19.74 -0.12 -5.17 16 22 C -0.09 -3.67 9.77 71.23 0.70 -2.97 16 23 C -0.11 -3.38 8.03 22.25 0.18 -3.20 16 24 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.05 1.00 7.75 -2.38 -0.02 0.98 16 26 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 28 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.34 5.47 9.00 -89.69 -0.81 4.66 16 30 H 0.34 7.68 7.32 -89.69 -0.66 7.03 16 31 H 0.08 1.37 8.08 -2.39 -0.02 1.35 16 32 H 0.08 1.45 8.08 -2.39 -0.02 1.43 16 33 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 34 H 0.06 2.38 8.14 -2.39 -0.02 2.37 16 35 H 0.09 2.69 8.09 -2.39 -0.02 2.67 16 36 H 0.04 1.82 7.54 -2.39 -0.02 1.80 16 37 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 38 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.04 1.77 7.54 -2.39 -0.02 1.75 16 40 H 0.09 2.65 8.09 -2.39 -0.02 2.63 16 41 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -70.19 338.98 4.11 -66.08 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: -0.45 Total: 25.82 kcal Atomic # 6 Polarization: -50.41 SS G_CDS: 3.86 Total: -46.56 kcal Atomic # 7 Polarization: -75.22 SS G_CDS: -1.15 Total: -76.38 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.18 Total: -16.16 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -70.19 4.11 -66.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037723459.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.661 kcal (2) G-P(sol) polarization free energy of solvation -70.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds