Wall clock time and date at job start Mon Mar 30 2020 06:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46824 * 2 1 4 4 H 1.09000 * 109.47281 * 305.85818 * 3 2 1 5 5 C 1.50700 * 109.47236 * 185.85273 * 3 2 1 6 6 H 1.08001 * 119.99981 * 243.39627 * 5 3 2 7 7 C 1.37871 * 119.99928 * 63.39890 * 5 3 2 8 8 N 1.31517 * 119.99992 * 196.04557 * 7 5 3 9 9 Si 1.86798 * 120.00000 * 16.04480 * 7 5 3 10 10 H 1.48500 * 109.47291 * 92.79468 * 9 7 5 11 11 H 1.48506 * 109.47346 * 212.79412 * 9 7 5 12 12 H 1.48503 * 109.47293 * 332.79697 * 9 7 5 13 13 N 1.46904 * 109.46992 * 65.85307 * 3 2 1 14 14 C 1.46900 * 111.00317 * 258.52994 * 13 3 2 15 15 C 1.50698 * 109.47306 * 175.34105 * 14 13 3 16 16 C 1.38261 * 119.99722 * 259.99906 * 15 14 13 17 17 C 1.38207 * 119.99713 * 180.02562 * 16 15 14 18 18 C 1.38262 * 120.00378 * 359.97438 * 17 16 15 19 19 C 1.38210 * 119.99645 * 0.04178 * 18 17 16 20 20 C 1.38209 * 120.00193 * 80.01397 * 15 14 13 21 21 C 1.50706 * 120.00071 * 0.02562 * 20 15 14 22 22 O 1.42904 * 109.47042 * 179.97438 * 21 20 15 23 23 C 1.42894 * 113.99828 * 180.02562 * 22 21 20 24 24 H 1.09004 * 109.46608 * 175.81798 * 1 2 3 25 25 H 1.09000 * 109.47317 * 295.81023 * 1 2 3 26 26 H 1.08993 * 109.47343 * 55.81669 * 1 2 3 27 27 H 1.09004 * 109.47169 * 240.00829 * 2 1 3 28 28 H 1.08990 * 109.47557 * 120.00316 * 2 1 3 29 29 H 0.97004 * 119.99726 * 179.97438 * 8 7 5 30 30 H 1.00902 * 110.99994 * 134.57204 * 13 3 2 31 31 H 1.08992 * 109.47288 * 55.33616 * 14 13 3 32 32 H 1.09004 * 109.46920 * 295.33679 * 14 13 3 33 33 H 1.07996 * 119.99952 * 359.97438 * 16 15 14 34 34 H 1.07999 * 119.99796 * 179.69843 * 17 16 15 35 35 H 1.08000 * 120.00240 * 179.97438 * 18 17 16 36 36 H 1.08007 * 119.99709 * 179.97438 * 19 18 17 37 37 H 1.08993 * 109.46865 * 299.99285 * 21 20 15 38 38 H 1.08999 * 109.47022 * 59.99531 * 21 20 15 39 39 H 1.08997 * 109.47890 * 59.99686 * 23 22 21 40 40 H 1.09000 * 109.47290 * 180.02562 * 23 22 21 41 41 H 1.09003 * 109.47163 * 299.99460 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5935 1.9857 -0.8329 5 6 3.5400 1.4451 -0.1449 6 1 4.1585 1.8362 0.6494 7 6 4.1226 0.9482 -1.2914 8 7 5.4047 0.6550 -1.3035 9 14 3.0912 0.6914 -2.8274 10 1 3.1669 1.9030 -3.6828 11 1 3.6080 -0.4794 -3.5808 12 1 1.6786 0.4465 -2.4400 13 7 1.6689 2.0930 1.2638 14 6 0.5004 2.9649 1.0841 15 6 0.0804 3.5236 2.4191 16 6 -0.9817 2.9595 3.1013 17 6 -1.3672 3.4723 4.3255 18 6 -0.6906 4.5490 4.8682 19 6 0.3708 5.1131 4.1860 20 6 0.7566 4.6001 2.9614 21 6 1.9136 5.2156 2.2174 22 8 2.4429 6.3046 2.9764 23 6 3.5499 6.9616 2.3561 24 1 -0.3633 -1.0250 -0.0749 25 1 -0.3634 0.4474 0.9251 26 1 -0.3633 0.5773 -0.8501 27 1 1.8934 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8898 29 1 5.8145 0.3051 -2.1101 30 1 2.4477 2.6067 1.6484 31 1 -0.3203 2.3890 0.6567 32 1 0.7581 3.7838 0.4123 33 1 -1.5104 2.1188 2.6772 34 1 -2.1999 3.0347 4.8561 35 1 -0.9922 4.9499 5.8246 36 1 0.8991 5.9544 4.6097 37 1 2.6899 4.4653 2.0681 38 1 1.5702 5.5808 1.2495 39 1 3.2402 7.3627 1.3911 40 1 3.8938 7.7752 2.9947 41 1 4.3605 6.2478 2.2097 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037762981.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:56 Heat of formation + Delta-G solvation = -44.046176 kcal Electronic energy + Delta-G solvation = -20171.334474 eV Core-core repulsion = 17243.176861 eV Total energy + Delta-G solvation = -2928.157614 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.70865 -38.56101 -38.10289 -34.82562 -33.72603 -32.59948 -31.55506 -29.20610 -28.17712 -26.47302 -25.69356 -24.12562 -22.71282 -21.61478 -21.41823 -19.05862 -17.66943 -17.54991 -17.17787 -16.86434 -16.05848 -15.89302 -15.78080 -15.27722 -15.22292 -14.83149 -14.53566 -14.19336 -13.80668 -13.79210 -13.53000 -13.32144 -13.06658 -12.85140 -12.67471 -12.64946 -12.44487 -12.12863 -11.85035 -11.71526 -11.52787 -11.20771 -11.09016 -10.86237 -10.59956 -9.66959 -9.49317 -9.08945 -8.34814 -6.34410 0.43972 0.56143 1.31979 1.36323 1.46705 2.32810 2.70911 2.84759 3.00020 3.65379 3.87909 3.97878 4.11808 4.20102 4.30206 4.33577 4.41558 4.49526 4.52823 4.53638 4.54944 4.64009 4.68510 4.75139 4.79334 4.87833 4.93231 5.12786 5.20510 5.25064 5.29228 5.41114 5.53744 5.58428 5.67852 5.74330 5.81604 5.99013 6.12930 6.17957 6.45561 6.63849 6.81984 7.31187 8.81530 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.018278 B = 0.006198 C = 0.004916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.557326 B = 4516.415467 C = 5694.744232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C 0.197 3.803 4 H 0.005 0.995 5 C -0.539 4.539 6 H 0.034 0.966 7 C 0.024 3.976 8 N -0.938 5.938 9 Si 0.925 3.075 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.224 1.224 13 N -0.672 5.672 14 C 0.092 3.908 15 C -0.079 4.079 16 C -0.110 4.110 17 C -0.120 4.120 18 C -0.126 4.126 19 C -0.110 4.110 20 C -0.100 4.100 21 C 0.104 3.896 22 O -0.399 6.399 23 C 0.025 3.975 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.045 0.955 27 H 0.038 0.962 28 H 0.044 0.956 29 H 0.266 0.734 30 H 0.330 0.670 31 H 0.089 0.911 32 H 0.026 0.974 33 H 0.135 0.865 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.130 0.870 37 H 0.049 0.951 38 H 0.062 0.938 39 H 0.049 0.951 40 H 0.109 0.891 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.896 8.834 7.688 18.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.148 4.148 3 C 0.088 3.912 4 H 0.023 0.977 5 C -0.577 4.577 6 H 0.052 0.948 7 C -0.175 4.175 8 N -0.577 5.577 9 Si 0.749 3.251 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.147 1.147 13 N -0.303 5.303 14 C -0.037 4.037 15 C -0.080 4.080 16 C -0.129 4.129 17 C -0.138 4.138 18 C -0.144 4.144 19 C -0.128 4.128 20 C -0.101 4.101 21 C 0.028 3.972 22 O -0.319 6.319 23 C -0.071 4.071 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.148 0.852 31 H 0.107 0.893 32 H 0.044 0.956 33 H 0.153 0.847 34 H 0.167 0.833 35 H 0.164 0.836 36 H 0.148 0.852 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.128 0.872 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -14.195 8.279 7.969 18.263 hybrid contribution 1.223 0.464 -1.671 2.122 sum -12.971 8.743 6.298 16.863 Atomic orbital electron populations 1.21788 0.95216 1.01249 1.01507 1.21765 0.95767 0.97670 0.99568 1.19355 0.92456 0.92212 0.87192 0.97689 1.21512 0.91739 1.41693 1.02789 0.94760 1.25736 0.95831 0.93837 1.02069 1.70129 1.13844 1.44263 1.29417 0.86195 0.82000 0.77722 0.79180 1.20438 1.21223 1.14688 1.60639 1.08101 1.33667 1.27919 1.21069 0.94992 0.94676 0.92933 1.19638 0.96528 0.95036 0.96796 1.21185 0.96542 0.99634 0.95522 1.21464 1.00461 0.96519 0.95378 1.21451 0.95596 0.96680 1.00654 1.21067 0.97401 1.00300 0.94016 1.19642 0.96878 0.96890 0.96667 1.21204 0.93859 0.88549 0.93586 1.87761 1.49732 1.47075 1.47288 1.22944 0.87840 0.97344 0.99004 0.92497 0.91583 0.93572 0.94394 0.93686 0.92517 0.85215 0.89288 0.95587 0.84743 0.83341 0.83574 0.85207 0.93305 0.92010 0.93241 0.87227 0.94386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.62 8.74 71.98 0.63 -3.99 16 2 C -0.11 -4.62 4.85 30.59 0.15 -4.48 16 3 C 0.20 8.98 1.75 44.17 0.08 9.06 16 4 H 0.01 0.25 6.35 -2.39 -0.02 0.23 16 5 C -0.54 -30.15 9.03 25.60 0.23 -29.92 16 6 H 0.03 2.13 7.67 -2.91 -0.02 2.11 16 7 C 0.02 1.39 5.31 84.65 0.45 1.84 16 8 N -0.94 -57.73 13.96 21.45 0.30 -57.44 16 9 Si 0.93 42.81 25.76 68.60 1.77 44.58 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.22 -9.38 5.49 99.48 0.55 -8.83 16 13 N -0.67 -27.01 6.07 -499.46 -3.03 -30.04 16 14 C 0.09 3.04 4.62 85.56 0.39 3.44 16 15 C -0.08 -2.39 5.43 -19.87 -0.11 -2.50 16 16 C -0.11 -2.83 9.67 22.27 0.22 -2.61 16 17 C -0.12 -2.60 10.05 22.27 0.22 -2.38 16 18 C -0.13 -2.78 10.05 22.27 0.22 -2.56 16 19 C -0.11 -2.94 9.38 22.27 0.21 -2.73 16 20 C -0.10 -3.03 5.88 -19.86 -0.12 -3.14 16 21 C 0.10 3.21 5.13 71.24 0.37 3.57 16 22 O -0.40 -11.48 9.18 -148.98 -1.37 -12.85 16 23 C 0.02 0.57 11.01 113.37 1.25 1.81 16 24 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 25 H 0.07 2.04 6.66 -2.39 -0.02 2.02 16 26 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.04 1.67 4.88 -2.39 -0.01 1.66 16 28 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 30 H 0.33 14.16 6.14 -89.69 -0.55 13.60 16 31 H 0.09 2.73 5.88 -2.39 -0.01 2.71 16 32 H 0.03 0.88 7.06 -2.38 -0.02 0.86 16 33 H 0.13 3.02 8.04 -2.91 -0.02 3.00 16 34 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 35 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 36 H 0.13 3.34 7.01 -2.91 -0.02 3.32 16 37 H 0.05 1.69 6.40 -2.39 -0.02 1.68 16 38 H 0.06 1.83 7.55 -2.39 -0.02 1.81 16 39 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -64.72 322.47 2.16 -62.56 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: 0.30 Total: 27.77 kcal Atomic # 6 Polarization: -38.78 SS G_CDS: 4.19 Total: -34.59 kcal Atomic # 7 Polarization: -84.75 SS G_CDS: -2.73 Total: -87.48 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -1.37 Total: -12.85 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.77 Total: 44.58 kcal Total: -64.72 2.16 -62.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037762981.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.514 kcal (2) G-P(sol) polarization free energy of solvation -64.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds