Wall clock time and date at job start Mon Mar 30 2020 07:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52990 * 109.47219 * 2 1 4 4 N 1.46902 * 109.47130 * 239.99495 * 2 1 3 5 5 C 1.46905 * 110.99559 * 69.07804 * 4 2 1 6 6 C 1.50706 * 109.46958 * 281.70020 * 5 4 2 7 7 H 1.07997 * 119.99813 * 354.62676 * 6 5 4 8 8 C 1.37871 * 119.99775 * 174.62339 * 6 5 4 9 9 N 1.31512 * 120.00261 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99639 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47423 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47121 * 119.99957 * 10 8 6 13 13 H 1.48504 * 109.46935 * 239.99499 * 10 8 6 14 14 C 1.46901 * 111.00035 * 193.02448 * 4 2 1 15 15 C 1.53001 * 109.46566 * 76.51807 * 14 4 2 16 16 H 1.09001 * 109.47044 * 295.91745 * 15 14 4 17 17 O 1.42894 * 109.47474 * 55.92300 * 15 14 4 18 18 C 1.50702 * 109.46948 * 175.91910 * 15 14 4 19 19 C 1.38228 * 120.00142 * 279.72782 * 18 15 14 20 20 C 1.38234 * 120.00167 * 179.78625 * 19 18 15 21 21 C 1.38233 * 120.00229 * 0.44048 * 20 19 18 22 22 C 1.38241 * 119.99653 * 359.80988 * 21 20 19 23 23 C 1.38234 * 119.99992 * 359.97438 * 22 21 20 24 24 H 1.09005 * 109.46965 * 51.50823 * 1 2 3 25 25 H 1.09003 * 109.46939 * 171.49921 * 1 2 3 26 26 H 1.08994 * 109.47334 * 291.50807 * 1 2 3 27 27 H 1.08998 * 109.47028 * 120.00102 * 2 1 3 28 28 H 1.09006 * 109.47455 * 67.10239 * 3 2 1 29 29 H 1.09004 * 109.47227 * 187.10270 * 3 2 1 30 30 H 1.09002 * 109.47243 * 307.09864 * 3 2 1 31 31 H 1.08994 * 109.47466 * 41.70221 * 5 4 2 32 32 H 1.09002 * 109.46919 * 161.70505 * 5 4 2 33 33 H 0.96998 * 119.99909 * 180.02562 * 9 8 6 34 34 H 1.08998 * 109.47346 * 196.51972 * 14 4 2 35 35 H 1.09004 * 109.46954 * 316.52033 * 14 4 2 36 36 H 0.96698 * 114.00203 * 59.99133 * 17 15 14 37 37 H 1.08004 * 120.00359 * 359.97438 * 19 18 15 38 38 H 1.08006 * 120.00130 * 180.27656 * 20 19 18 39 39 H 1.07996 * 120.00290 * 179.83397 * 21 20 19 40 40 H 1.07998 * 119.99541 * 179.97438 * 22 21 20 41 41 H 1.07999 * 119.99919 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 1.7334 0.0870 -2.4112 6 6 0.2858 -0.0891 -2.7914 7 1 -0.3352 -0.7839 -2.2455 8 6 -0.2457 0.6367 -3.8361 9 7 0.5106 1.4824 -4.5012 10 14 -2.0403 0.4189 -4.3070 11 1 -2.6689 -0.5846 -3.4110 12 1 -2.7487 1.7169 -4.1714 13 1 -2.1297 -0.0492 -5.7135 14 6 3.4549 -0.9857 -1.0890 15 6 3.6610 -2.1797 -0.1546 16 1 3.3279 -1.9170 0.8495 17 8 2.9042 -3.2940 -0.6314 18 6 5.1230 -2.5436 -0.1196 19 6 5.6721 -3.2978 -1.1396 20 6 7.0141 -3.6279 -1.1098 21 6 7.8051 -3.2115 -0.0554 22 6 7.2549 -2.4615 0.9673 23 6 5.9138 -2.1277 0.9352 24 1 -0.3633 0.6397 -0.8044 25 1 -0.3633 -1.0164 -0.1519 26 1 -0.3633 0.3767 0.9560 27 1 1.8933 -0.5138 0.8900 28 1 1.7842 1.9183 0.9467 29 1 3.1226 1.4450 -0.1271 30 1 1.5767 1.9916 -0.8197 31 1 1.9333 1.1414 -2.2206 32 1 2.3680 -0.2617 -3.2259 33 1 0.1365 1.9933 -5.2360 34 1 3.8543 -1.2228 -2.0750 35 1 3.9735 -0.1156 -0.6865 36 1 3.1476 -3.5828 -1.5215 37 1 5.0533 -3.6268 -1.9614 38 1 7.4442 -4.2135 -1.9090 39 1 8.8530 -3.4716 -0.0307 40 1 7.8728 -2.1365 1.7913 41 1 5.4840 -1.5414 1.7340 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042529955.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:23 Heat of formation + Delta-G solvation = -39.509178 kcal Electronic energy + Delta-G solvation = -20276.736575 eV Core-core repulsion = 17348.775701 eV Total energy + Delta-G solvation = -2927.960875 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.69973 -39.31133 -37.34806 -34.66602 -33.02177 -32.06917 -31.71385 -29.93986 -28.03065 -27.36563 -24.40526 -24.03069 -23.37167 -21.89856 -20.21144 -18.55236 -18.34884 -17.04367 -16.83217 -16.58490 -16.43285 -15.99556 -15.54798 -15.02308 -14.81982 -14.59619 -14.19481 -14.16364 -13.89913 -13.63148 -13.10898 -13.01094 -12.85234 -12.71453 -12.61270 -12.48827 -12.32884 -12.09076 -12.00332 -11.88697 -11.69205 -11.33252 -11.02451 -10.80357 -10.49524 -9.81097 -9.64394 -8.81175 -8.10626 -6.14795 0.41785 0.51005 1.41045 1.43192 1.55698 2.44644 2.83551 3.20701 3.25368 3.65840 3.86130 3.94520 4.10898 4.13776 4.24938 4.27847 4.32509 4.41760 4.50923 4.62490 4.66330 4.71765 4.85729 4.94032 5.00326 5.05058 5.11609 5.15053 5.18401 5.27865 5.32741 5.56997 5.59939 5.62339 5.70020 5.75481 5.80254 6.11945 6.20081 6.50134 6.71133 6.88907 6.99310 7.50460 8.99201 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.028197 B = 0.004751 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.770751 B = 5892.204813 C = 6212.833289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.087 3.913 3 C -0.174 4.174 4 N -0.526 5.526 5 C 0.199 3.801 6 C -0.494 4.494 7 H 0.066 0.934 8 C 0.000 4.000 9 N -0.939 5.939 10 Si 0.955 3.045 11 H -0.264 1.264 12 H -0.282 1.282 13 H -0.283 1.283 14 C 0.031 3.969 15 C 0.166 3.834 16 H 0.101 0.899 17 O -0.555 6.555 18 C -0.125 4.125 19 C -0.126 4.126 20 C -0.126 4.126 21 C -0.127 4.127 22 C -0.124 4.124 23 C -0.124 4.124 24 H 0.053 0.947 25 H 0.043 0.957 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.048 0.952 30 H 0.038 0.962 31 H -0.009 1.009 32 H -0.011 1.011 33 H 0.259 0.741 34 H 0.057 0.943 35 H 0.039 0.961 36 H 0.377 0.623 37 H 0.124 0.876 38 H 0.141 0.859 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.442 -7.221 11.037 18.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.022 4.022 3 C -0.233 4.233 4 N -0.250 5.250 5 C 0.073 3.927 6 C -0.533 4.533 7 H 0.085 0.915 8 C -0.197 4.197 9 N -0.581 5.581 10 Si 0.781 3.219 11 H -0.188 1.188 12 H -0.208 1.208 13 H -0.209 1.209 14 C -0.098 4.098 15 C 0.107 3.893 16 H 0.118 0.882 17 O -0.361 6.361 18 C -0.126 4.126 19 C -0.144 4.144 20 C -0.144 4.144 21 C -0.145 4.145 22 C -0.142 4.142 23 C -0.142 4.142 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.009 0.991 32 H 0.007 0.993 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.226 0.774 37 H 0.142 0.858 38 H 0.159 0.841 39 H 0.164 0.836 40 H 0.163 0.837 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 11.884 -7.503 11.439 18.121 hybrid contribution -0.184 1.024 -1.340 1.696 sum 11.700 -6.479 10.099 16.759 Atomic orbital electron populations 1.21899 0.94811 1.01484 1.00847 1.21574 0.96191 0.91815 0.92582 1.22348 1.00229 0.98851 1.01855 1.62197 1.13216 1.46723 1.02876 1.19578 0.95696 0.91050 0.86403 1.21577 0.96153 1.21589 1.13956 0.91542 1.25759 1.01881 0.95425 0.96616 1.70087 1.37524 1.27755 1.22696 0.85538 0.80482 0.77917 0.77969 1.18830 1.20792 1.20942 1.22776 0.89938 0.97571 0.99503 1.20648 0.86052 0.85062 0.97582 0.88172 1.86559 1.63574 1.49145 1.36828 1.20647 0.96355 0.99345 0.96217 1.21131 0.96286 0.98667 0.98339 1.21424 0.93409 1.00161 0.99356 1.21527 1.00989 0.97939 0.94037 1.21463 0.94845 0.98292 0.99605 1.21248 0.94695 1.00209 0.98009 0.92768 0.93756 0.92087 0.90150 0.90725 0.93318 0.94313 0.99132 0.99342 0.93171 0.92451 0.94303 0.77411 0.85803 0.84130 0.83619 0.83667 0.84993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.18 7.86 71.98 0.57 -4.62 16 2 C 0.09 3.24 2.81 44.91 0.13 3.37 16 3 C -0.17 -6.25 8.30 71.98 0.60 -5.65 16 4 N -0.53 -22.18 4.14 -875.51 -3.63 -25.81 16 5 C 0.20 10.33 4.52 85.56 0.39 10.72 16 6 C -0.49 -27.43 6.73 25.60 0.17 -27.26 16 7 H 0.07 3.68 6.24 -2.91 -0.02 3.66 16 8 C 0.00 0.00 5.46 84.65 0.46 0.46 16 9 N -0.94 -56.37 13.29 21.44 0.28 -56.09 16 10 Si 0.95 44.72 29.54 68.60 2.03 46.75 16 11 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 13 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 14 C 0.03 1.09 4.56 86.30 0.39 1.48 16 15 C 0.17 4.96 3.25 29.85 0.10 5.06 16 16 H 0.10 2.92 6.79 -2.39 -0.02 2.90 16 17 O -0.56 -18.17 12.97 -148.98 -1.93 -20.10 16 18 C -0.12 -3.22 4.97 -19.87 -0.10 -3.32 16 19 C -0.13 -3.02 9.32 22.27 0.21 -2.82 16 20 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 21 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 22 C -0.12 -2.32 10.05 22.27 0.22 -2.09 16 23 C -0.12 -2.76 9.67 22.27 0.22 -2.55 16 24 H 0.05 2.47 5.87 -2.38 -0.01 2.45 16 25 H 0.04 1.80 7.69 -2.39 -0.02 1.78 16 26 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.08 2.63 6.69 -2.39 -0.02 2.61 16 28 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 29 H 0.05 1.66 6.43 -2.39 -0.02 1.65 16 30 H 0.04 1.67 6.33 -2.39 -0.02 1.65 16 31 H -0.01 -0.50 5.36 -2.39 -0.01 -0.51 16 32 H -0.01 -0.65 7.54 -2.39 -0.02 -0.67 16 33 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 34 H 0.06 2.13 7.55 -2.39 -0.02 2.12 16 35 H 0.04 1.34 6.28 -2.38 -0.01 1.32 16 36 H 0.38 10.66 7.50 -74.06 -0.56 10.11 16 37 H 0.12 2.78 6.78 -2.91 -0.02 2.76 16 38 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 39 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 40 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 41 H 0.13 2.54 8.04 -2.91 -0.02 2.52 16 Total: -1.00 -65.44 322.70 1.02 -64.43 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.47 Total: 22.38 kcal Atomic # 6 Polarization: -35.35 SS G_CDS: 3.80 Total: -31.55 kcal Atomic # 7 Polarization: -78.56 SS G_CDS: -3.34 Total: -81.90 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -1.93 Total: -20.10 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -65.44 1.02 -64.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042529955.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.917 kcal (2) G-P(sol) polarization free energy of solvation -65.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds