Wall clock time and date at job start Mon Mar 30 2020 06:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47336 * 2 1 4 4 C 1.53002 * 109.47013 * 119.99859 * 2 1 3 5 5 N 1.46506 * 109.47035 * 64.99796 * 4 2 1 6 6 C 1.46496 * 119.99759 * 90.00495 * 5 4 2 7 7 C 1.50695 * 109.47390 * 89.99689 * 6 5 4 8 8 H 1.08001 * 120.00425 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99997 * 179.97438 * 7 6 5 10 10 N 1.31507 * 119.99974 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99547 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47146 * 90.00221 * 11 9 7 13 13 H 1.48505 * 109.46836 * 209.99793 * 11 9 7 14 14 H 1.48493 * 109.47533 * 329.99811 * 11 9 7 15 15 C 1.39676 * 120.00128 * 270.00037 * 5 4 2 16 16 C 1.38906 * 120.07326 * 359.72560 * 15 5 4 17 17 C 1.38106 * 119.92173 * 179.77025 * 16 15 5 18 18 C 1.38284 * 120.07499 * 0.50478 * 17 16 15 19 19 C 1.50703 * 119.92360 * 179.72810 * 18 17 16 20 20 O 1.42906 * 109.46599 * 270.02166 * 19 18 17 21 21 C 1.38284 * 120.14823 * 359.74865 * 18 17 16 22 22 C 1.38103 * 120.07562 * 359.97438 * 21 18 17 23 23 H 1.09001 * 109.46690 * 60.00268 * 1 2 3 24 24 H 1.09007 * 109.47116 * 179.97438 * 1 2 3 25 25 H 1.08988 * 109.47502 * 300.00331 * 1 2 3 26 26 H 1.09005 * 109.47284 * 239.99554 * 2 1 3 27 27 H 1.08995 * 109.47393 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47013 * 299.99534 * 3 2 1 29 29 H 1.08996 * 109.46904 * 59.99123 * 3 2 1 30 30 H 1.09004 * 109.46930 * 305.00026 * 4 2 1 31 31 H 1.09000 * 109.47312 * 184.99970 * 4 2 1 32 32 H 1.09001 * 109.47057 * 210.00204 * 6 5 4 33 33 H 1.08999 * 109.47333 * 329.99764 * 6 5 4 34 34 H 0.96998 * 119.99696 * 179.97438 * 10 9 7 35 35 H 1.07998 * 120.04314 * 0.02562 * 16 15 5 36 36 H 1.08008 * 119.96038 * 180.25423 * 17 16 15 37 37 H 1.08994 * 109.47397 * 30.01914 * 19 18 17 38 38 H 1.08997 * 109.47289 * 150.02682 * 19 18 17 39 39 H 0.96705 * 113.99514 * 180.02562 * 20 19 18 40 40 H 1.08004 * 119.95901 * 180.02562 * 21 18 17 41 41 H 1.08000 * 120.03603 * 179.97438 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6523 -2.1329 1.1906 6 6 2.5427 -3.1114 0.5614 7 6 3.4831 -3.6732 1.5962 8 1 3.4234 -3.3356 2.6203 9 6 4.4193 -4.6192 1.2357 10 7 4.4918 -5.0308 -0.0112 11 14 5.5845 -5.3161 2.5187 12 1 4.9739 -6.5183 3.1410 13 1 6.8669 -5.6915 1.8707 14 1 5.8392 -4.2928 3.5641 15 6 0.4340 -2.5457 1.7347 16 6 -0.4088 -1.6201 2.3369 17 6 -1.6149 -2.0310 2.8696 18 6 -1.9792 -3.3638 2.8134 19 6 -3.2933 -3.8094 3.4013 20 8 -3.1055 -4.1646 4.7727 21 6 -1.1402 -4.2887 2.2193 22 6 0.0648 -3.8837 1.6796 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8898 26 1 1.8934 -0.5139 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6053 -0.2617 2.1370 31 1 3.1263 -0.6444 1.2952 32 1 1.9496 -3.9192 0.1326 33 1 3.1179 -2.6253 -0.2265 34 1 5.1506 -5.6960 -0.2648 35 1 -0.1231 -0.5797 2.3847 36 1 -2.2725 -1.3112 3.3343 37 1 -4.0164 -2.9968 3.3322 38 1 -3.6638 -4.6734 2.8497 39 1 -3.9119 -4.4622 5.2159 40 1 -1.4279 -5.3288 2.1768 41 1 0.7197 -4.6066 1.2161 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043417010.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:50 Heat of formation + Delta-G solvation = -31.522321 kcal Electronic energy + Delta-G solvation = -20177.329081 eV Core-core repulsion = 17249.714542 eV Total energy + Delta-G solvation = -2927.614539 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.29832 -37.25012 -35.89984 -34.13732 -32.50629 -30.41819 -30.00843 -27.49189 -26.86194 -25.91336 -24.10213 -22.41627 -21.59178 -20.17540 -19.11875 -17.24128 -16.86204 -16.42228 -15.42716 -14.90028 -14.64694 -14.36151 -14.20062 -13.91072 -13.58686 -13.04419 -12.87822 -12.52620 -12.47947 -12.26906 -12.00767 -11.80885 -11.37571 -11.25607 -11.07595 -10.85794 -10.77853 -10.65791 -10.48809 -10.35030 -10.22807 -9.93502 -9.76690 -9.67124 -8.82882 -8.49486 -8.24138 -6.46820 -6.01281 -4.16313 2.12858 2.17980 3.27835 3.34247 3.38163 4.08930 4.34772 4.42232 4.89904 5.16386 5.22359 5.25488 5.27976 5.36170 5.40281 5.60541 5.63397 5.67163 5.80350 5.85710 5.94648 6.03003 6.11417 6.18839 6.27621 6.34991 6.38880 6.46145 6.61313 6.65633 6.67502 6.96650 7.03354 7.20214 7.26872 7.36919 7.59585 7.77965 7.82264 8.16695 8.28421 8.49834 8.93000 9.50585 10.96343 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.012654 B = 0.007198 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.181891 B = 3889.130760 C = 5618.153952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C -0.142 4.142 4 C 0.130 3.870 5 N -0.605 5.605 6 C 0.250 3.750 7 C -0.531 4.531 8 H 0.059 0.941 9 C 0.062 3.938 10 N -0.895 5.895 11 Si 0.895 3.105 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.249 3.751 16 C -0.221 4.221 17 C -0.057 4.057 18 C -0.184 4.184 19 C 0.131 3.869 20 O -0.570 6.570 21 C -0.054 4.054 22 C -0.193 4.193 23 H 0.042 0.958 24 H 0.063 0.937 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.035 0.965 33 H 0.030 0.970 34 H 0.264 0.736 35 H 0.119 0.881 36 H 0.107 0.893 37 H 0.043 0.957 38 H 0.044 0.956 39 H 0.369 0.631 40 H 0.110 0.890 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.937 7.422 2.099 14.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.137 4.137 3 C -0.200 4.200 4 C 0.005 3.995 5 N -0.309 5.309 6 C 0.130 3.870 7 C -0.569 4.569 8 H 0.077 0.923 9 C -0.140 4.140 10 N -0.534 5.534 11 Si 0.723 3.277 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.199 1.199 15 C 0.142 3.858 16 C -0.243 4.243 17 C -0.076 4.076 18 C -0.186 4.186 19 C 0.054 3.946 20 O -0.375 6.375 21 C -0.073 4.073 22 C -0.215 4.215 23 H 0.061 0.939 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.136 0.864 36 H 0.125 0.875 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.214 0.786 40 H 0.128 0.872 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.975 7.529 1.723 13.420 hybrid contribution 0.224 -0.648 0.739 1.009 sum -10.751 6.880 2.463 12.999 Atomic orbital electron populations 1.21989 0.95278 1.02338 1.00455 1.21624 0.96248 0.95713 1.00102 1.21765 1.00991 0.96040 1.01237 1.21360 1.00073 0.81824 0.96203 1.47180 1.16866 1.06972 1.59928 1.19266 0.88002 0.86892 0.92820 1.21587 1.16599 1.22867 0.95889 0.92251 1.24949 0.97367 0.96296 0.95400 1.69927 1.35823 1.31175 1.16507 0.86535 0.80171 0.79490 0.81508 1.20509 1.21172 1.19897 1.17929 0.85502 0.92636 0.89756 1.20679 0.96521 0.99052 1.08094 1.20518 0.95498 0.94703 0.96852 1.19074 0.98056 0.93949 1.07555 1.20828 0.94628 0.97466 0.81649 1.86672 1.37541 1.88513 1.24748 1.20662 0.93092 0.97979 0.95584 1.20877 0.98245 0.95137 1.07256 0.93862 0.91755 0.92960 0.90994 0.92676 0.93010 0.92969 0.91948 0.90689 0.94714 0.95184 0.92682 0.86364 0.87466 0.93919 0.93783 0.78554 0.87166 0.84967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 7.64 37.16 0.28 -1.75 16 2 C -0.12 -1.76 3.13 -90.62 -0.28 -2.04 16 3 C -0.14 -1.74 9.19 37.16 0.34 -1.40 16 4 C 0.13 2.27 4.95 -4.04 -0.02 2.25 16 5 N -0.61 -12.62 2.45 -173.12 -0.42 -13.05 16 6 C 0.25 6.19 4.91 -5.20 -0.03 6.16 16 7 C -0.53 -14.47 9.39 -34.44 -0.32 -14.80 16 8 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 10 N -0.90 -25.66 13.29 55.43 0.74 -24.93 16 11 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 15 C 0.25 5.01 5.37 -83.79 -0.45 4.56 16 16 C -0.22 -3.86 7.16 -39.38 -0.28 -4.14 16 17 C -0.06 -0.93 9.69 -39.61 -0.38 -1.31 16 18 C -0.18 -3.07 5.51 -104.59 -0.58 -3.65 16 19 C 0.13 1.74 7.17 36.01 0.26 2.00 16 20 O -0.57 -7.87 13.64 -35.23 -0.48 -8.35 16 21 C -0.05 -0.98 9.69 -39.61 -0.38 -1.37 16 22 C -0.19 -3.97 9.21 -39.38 -0.36 -4.34 16 23 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 1.05 5.87 -51.93 -0.30 0.75 16 25 H 0.05 0.69 6.67 -51.94 -0.35 0.34 16 26 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 1.01 6.19 -51.93 -0.32 0.69 16 31 H 0.07 1.38 8.07 -51.93 -0.42 0.96 16 32 H 0.03 0.91 6.20 -51.93 -0.32 0.59 16 33 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 34 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.12 1.88 4.42 -52.49 -0.23 1.65 16 36 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 37 H 0.04 0.48 8.08 -51.93 -0.42 0.06 16 38 H 0.04 0.52 8.08 -51.93 -0.42 0.10 16 39 H 0.37 3.00 9.12 45.56 0.42 3.42 16 40 H 0.11 1.80 8.06 -52.48 -0.42 1.37 16 41 H 0.13 2.99 6.14 -52.49 -0.32 2.66 16 LS Contribution 328.57 15.07 4.95 4.95 Total: -1.00 -30.15 328.57 -8.16 -38.31 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -5.62 Total: 4.78 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -2.30 Total: -18.21 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.31 Total: -37.97 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -0.48 Total: -8.35 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.15 -8.16 -38.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043417010.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.790 kcal (2) G-P(sol) polarization free energy of solvation -30.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds