Wall clock time and date at job start Mon Mar 30 2020 06:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47336 * 2 1 4 4 C 1.53002 * 109.47013 * 119.99859 * 2 1 3 5 5 N 1.46506 * 109.47035 * 64.99796 * 4 2 1 6 6 C 1.46496 * 119.99759 * 90.00495 * 5 4 2 7 7 C 1.50695 * 109.47390 * 89.99689 * 6 5 4 8 8 H 1.08001 * 120.00425 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99997 * 179.97438 * 7 6 5 10 10 N 1.31507 * 119.99974 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99547 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47146 * 90.00221 * 11 9 7 13 13 H 1.48505 * 109.46836 * 209.99793 * 11 9 7 14 14 H 1.48493 * 109.47533 * 329.99811 * 11 9 7 15 15 C 1.39676 * 120.00128 * 270.00037 * 5 4 2 16 16 C 1.38906 * 120.07326 * 359.72560 * 15 5 4 17 17 C 1.38106 * 119.92173 * 179.77025 * 16 15 5 18 18 C 1.38284 * 120.07499 * 0.50478 * 17 16 15 19 19 C 1.50703 * 119.92360 * 179.72810 * 18 17 16 20 20 O 1.42906 * 109.46599 * 270.02166 * 19 18 17 21 21 C 1.38284 * 120.14823 * 359.74865 * 18 17 16 22 22 C 1.38103 * 120.07562 * 359.97438 * 21 18 17 23 23 H 1.09001 * 109.46690 * 60.00268 * 1 2 3 24 24 H 1.09007 * 109.47116 * 179.97438 * 1 2 3 25 25 H 1.08988 * 109.47502 * 300.00331 * 1 2 3 26 26 H 1.09005 * 109.47284 * 239.99554 * 2 1 3 27 27 H 1.08995 * 109.47393 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47013 * 299.99534 * 3 2 1 29 29 H 1.08996 * 109.46904 * 59.99123 * 3 2 1 30 30 H 1.09004 * 109.46930 * 305.00026 * 4 2 1 31 31 H 1.09000 * 109.47312 * 184.99970 * 4 2 1 32 32 H 1.09001 * 109.47057 * 210.00204 * 6 5 4 33 33 H 1.08999 * 109.47333 * 329.99764 * 6 5 4 34 34 H 0.96998 * 119.99696 * 179.97438 * 10 9 7 35 35 H 1.07998 * 120.04314 * 0.02562 * 16 15 5 36 36 H 1.08008 * 119.96038 * 180.25423 * 17 16 15 37 37 H 1.08994 * 109.47397 * 30.01914 * 19 18 17 38 38 H 1.08997 * 109.47289 * 150.02682 * 19 18 17 39 39 H 0.96705 * 113.99514 * 180.02562 * 20 19 18 40 40 H 1.08004 * 119.95901 * 180.02562 * 21 18 17 41 41 H 1.08000 * 120.03603 * 179.97438 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6523 -2.1329 1.1906 6 6 2.5427 -3.1114 0.5614 7 6 3.4831 -3.6732 1.5962 8 1 3.4234 -3.3356 2.6203 9 6 4.4193 -4.6192 1.2357 10 7 4.4918 -5.0308 -0.0112 11 14 5.5845 -5.3161 2.5187 12 1 4.9739 -6.5183 3.1410 13 1 6.8669 -5.6915 1.8707 14 1 5.8392 -4.2928 3.5641 15 6 0.4340 -2.5457 1.7347 16 6 -0.4088 -1.6201 2.3369 17 6 -1.6149 -2.0310 2.8696 18 6 -1.9792 -3.3638 2.8134 19 6 -3.2933 -3.8094 3.4013 20 8 -3.1055 -4.1646 4.7727 21 6 -1.1402 -4.2887 2.2193 22 6 0.0648 -3.8837 1.6796 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8898 26 1 1.8934 -0.5139 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6053 -0.2617 2.1370 31 1 3.1263 -0.6444 1.2952 32 1 1.9496 -3.9192 0.1326 33 1 3.1179 -2.6253 -0.2265 34 1 5.1506 -5.6960 -0.2648 35 1 -0.1231 -0.5797 2.3847 36 1 -2.2725 -1.3112 3.3343 37 1 -4.0164 -2.9968 3.3322 38 1 -3.6638 -4.6734 2.8497 39 1 -3.9119 -4.4622 5.2159 40 1 -1.4279 -5.3288 2.1768 41 1 0.7197 -4.6066 1.2161 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043417010.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:50 Heat of formation + Delta-G solvation = -50.016842 kcal Electronic energy + Delta-G solvation = -20178.131063 eV Core-core repulsion = 17249.714542 eV Total energy + Delta-G solvation = -2928.416521 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.73383 -38.51205 -37.04572 -35.74473 -34.37514 -31.87521 -31.41657 -29.30115 -27.96129 -27.19844 -25.80865 -23.92156 -23.09826 -21.52368 -20.50577 -18.59985 -18.30506 -18.22092 -17.01586 -16.41557 -16.07185 -15.74223 -15.58370 -15.27205 -14.92240 -14.43675 -14.32521 -14.16298 -13.75469 -13.67537 -13.34689 -13.16309 -12.97897 -12.80931 -12.58276 -12.55245 -12.24943 -12.22871 -11.96172 -11.72533 -11.68122 -11.58305 -11.24314 -10.82241 -10.65026 -10.41245 -9.66404 -8.37360 -7.80739 -6.38036 0.69511 0.78443 1.34996 1.36302 1.46696 2.32482 2.58691 3.01692 3.05361 3.84667 3.90591 4.05716 4.07091 4.21455 4.25027 4.35691 4.45248 4.55590 4.66068 4.67315 4.71904 4.82704 4.89734 4.92553 4.95049 5.07095 5.09676 5.13110 5.21172 5.26731 5.30139 5.47670 5.49818 5.58709 5.66279 5.69728 5.90306 6.07144 6.18061 6.50625 6.83167 6.94533 7.06078 7.33840 8.82245 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.012654 B = 0.007198 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.181891 B = 3889.130760 C = 5618.153952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 C -0.135 4.135 4 C 0.128 3.872 5 N -0.616 5.616 6 C 0.270 3.730 7 C -0.541 4.541 8 H 0.048 0.952 9 C 0.014 3.986 10 N -0.926 5.926 11 Si 0.959 3.041 12 H -0.276 1.276 13 H -0.276 1.276 14 H -0.269 1.269 15 C 0.226 3.774 16 C -0.212 4.212 17 C -0.055 4.055 18 C -0.183 4.183 19 C 0.132 3.868 20 O -0.594 6.594 21 C -0.062 4.062 22 C -0.224 4.224 23 H 0.059 0.941 24 H 0.037 0.963 25 H 0.069 0.931 26 H 0.044 0.956 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.009 0.991 33 H 0.008 0.992 34 H 0.267 0.733 35 H 0.138 0.862 36 H 0.144 0.856 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.394 0.606 40 H 0.121 0.879 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.797 9.008 3.857 16.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.132 4.132 3 C -0.193 4.193 4 C 0.005 3.995 5 N -0.322 5.322 6 C 0.149 3.851 7 C -0.580 4.580 8 H 0.066 0.934 9 C -0.186 4.186 10 N -0.566 5.566 11 Si 0.784 3.216 12 H -0.202 1.202 13 H -0.201 1.201 14 H -0.194 1.194 15 C 0.121 3.879 16 C -0.234 4.234 17 C -0.073 4.073 18 C -0.185 4.185 19 C 0.056 3.944 20 O -0.403 6.403 21 C -0.081 4.081 22 C -0.247 4.247 23 H 0.078 0.922 24 H 0.056 0.944 25 H 0.088 0.912 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.027 0.973 33 H 0.026 0.974 34 H 0.076 0.924 35 H 0.155 0.845 36 H 0.161 0.839 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.244 0.756 40 H 0.139 0.861 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.879 9.126 3.501 16.168 hybrid contribution 0.673 -1.164 0.224 1.363 sum -12.206 7.962 3.726 15.042 Atomic orbital electron populations 1.21905 0.94179 1.01093 1.02101 1.21545 0.97105 0.97007 0.97514 1.21714 1.00818 0.93930 1.02860 1.21518 0.99288 0.80402 0.98273 1.46990 1.17004 1.07485 1.60749 1.18702 0.87644 0.86878 0.91902 1.21788 1.17278 1.23207 0.95705 0.93404 1.25752 0.98927 0.96552 0.97325 1.70031 1.36612 1.31730 1.18205 0.85540 0.78302 0.78682 0.79076 1.20207 1.20122 1.19405 1.18145 0.85750 0.93044 0.90970 1.20886 0.96369 0.99326 1.06851 1.20962 0.95246 0.95359 0.95778 1.19576 0.99033 0.93887 1.06002 1.20858 0.92815 0.99192 0.81583 1.86581 1.39931 1.88838 1.24926 1.20854 0.92502 0.99201 0.95527 1.20781 0.99395 0.95198 1.09288 0.92241 0.94375 0.91179 0.93710 0.93006 0.91464 0.91194 0.90109 0.92477 0.97348 0.97422 0.92408 0.84460 0.83870 0.90995 0.92327 0.75621 0.86066 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 7.64 71.98 0.55 -3.10 16 2 C -0.11 -3.33 3.13 -10.79 -0.03 -3.37 16 3 C -0.14 -3.06 9.19 71.98 0.66 -2.40 16 4 C 0.13 4.56 4.95 86.38 0.43 4.99 16 5 N -0.62 -26.93 2.45 -701.63 -1.72 -28.65 16 6 C 0.27 14.37 4.91 85.63 0.42 14.80 16 7 C -0.54 -30.95 9.39 25.60 0.24 -30.71 16 8 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 9 C 0.01 0.78 5.46 84.66 0.46 1.24 16 10 N -0.93 -55.11 13.29 21.45 0.28 -54.83 16 11 Si 0.96 45.02 29.54 68.60 2.03 47.05 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 14 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 15 C 0.23 9.33 5.37 38.21 0.21 9.54 16 16 C -0.21 -7.07 7.16 22.40 0.16 -6.91 16 17 C -0.05 -1.63 9.69 22.25 0.22 -1.41 16 18 C -0.18 -5.69 5.51 -19.84 -0.11 -5.79 16 19 C 0.13 3.02 7.17 71.24 0.51 3.53 16 20 O -0.59 -14.36 13.64 -148.98 -2.03 -16.39 16 21 C -0.06 -2.26 9.69 22.25 0.22 -2.04 16 22 C -0.22 -9.73 9.21 22.40 0.21 -9.52 16 23 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 24 H 0.04 1.23 5.87 -2.38 -0.01 1.21 16 25 H 0.07 1.62 6.67 -2.39 -0.02 1.60 16 26 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 27 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.08 2.53 6.19 -2.38 -0.01 2.51 16 31 H 0.06 2.19 8.07 -2.39 -0.02 2.17 16 32 H 0.01 0.49 6.20 -2.39 -0.01 0.48 16 33 H 0.01 0.44 8.07 -2.39 -0.02 0.42 16 34 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 35 H 0.14 3.97 4.42 -2.91 -0.01 3.96 16 36 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 37 H 0.07 1.25 8.08 -2.39 -0.02 1.23 16 38 H 0.06 1.17 8.08 -2.39 -0.02 1.15 16 39 H 0.39 4.97 9.12 -74.05 -0.68 4.30 16 40 H 0.12 3.98 8.06 -2.91 -0.02 3.96 16 41 H 0.10 4.77 6.14 -2.91 -0.02 4.75 16 Total: -1.00 -67.86 328.57 3.03 -64.82 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.34 Total: 19.17 kcal Atomic # 6 Polarization: -35.30 SS G_CDS: 4.13 Total: -31.17 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -1.44 Total: -83.48 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -2.03 Total: -16.39 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -67.86 3.03 -64.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043417010.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.808 kcal (2) G-P(sol) polarization free energy of solvation -67.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds