Wall clock time and date at job start Mon Mar 30 2020 06:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46801 * 2 1 4 4 H 1.08999 * 109.47105 * 304.99831 * 3 2 1 5 5 N 1.46904 * 109.47564 * 64.99921 * 3 2 1 6 6 C 1.50708 * 109.47157 * 184.99887 * 3 2 1 7 7 C 1.38163 * 120.02715 * 265.02349 * 6 3 2 8 8 C 1.38243 * 120.05438 * 179.97438 * 7 6 3 9 9 C 1.38289 * 120.11362 * 359.97438 * 8 7 6 10 10 C 1.38125 * 120.05159 * 0.02562 * 9 8 7 11 11 C 1.38708 * 120.02785 * 84.99860 * 6 3 2 12 12 O 1.35899 * 120.05461 * 359.97438 * 11 6 3 13 13 C 1.42903 * 116.99930 * 180.02562 * 12 11 6 14 14 C 1.53002 * 109.47006 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.46786 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.46884 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00571 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00035 * 180.02562 * 16 15 14 19 19 N 1.31520 * 120.00151 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00033 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47125 * 89.99814 * 20 18 16 22 22 H 1.48498 * 109.47295 * 209.99799 * 20 18 16 23 23 H 1.48504 * 109.46933 * 329.99819 * 20 18 16 24 24 H 1.08997 * 109.47038 * 299.99745 * 1 2 3 25 25 H 1.08999 * 109.47271 * 60.00460 * 1 2 3 26 26 H 1.09008 * 109.46849 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47362 * 239.99547 * 2 1 3 28 28 H 1.09000 * 109.46778 * 119.99367 * 2 1 3 29 29 H 1.00904 * 110.99356 * 296.04835 * 5 3 2 30 30 H 1.00901 * 110.99725 * 59.99548 * 5 3 2 31 31 H 1.08001 * 119.97059 * 359.94984 * 7 6 3 32 32 H 1.08004 * 119.94070 * 180.02562 * 8 7 6 33 33 H 1.07993 * 119.96940 * 180.28495 * 9 8 7 34 34 H 1.08000 * 120.02364 * 180.02562 * 10 9 8 35 35 H 1.08998 * 109.47294 * 300.00489 * 13 12 11 36 36 H 1.08995 * 109.47056 * 60.00501 * 13 12 11 37 37 H 1.08993 * 109.47487 * 299.99875 * 14 13 12 38 38 H 1.09003 * 109.46669 * 60.00618 * 14 13 12 39 39 H 1.08998 * 109.47491 * 300.00452 * 15 14 13 40 40 H 1.09003 * 109.46925 * 60.00881 * 15 14 13 41 41 H 0.96998 * 119.99590 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 7 1.6513 2.0994 1.2552 6 6 3.5419 1.4444 -0.1238 7 6 4.3290 1.5144 1.0096 8 6 5.7068 1.5156 0.8967 9 6 6.3008 1.4463 -0.3502 10 6 5.5183 1.3762 -1.4863 11 6 4.1353 1.3754 -1.3757 12 8 3.3633 1.3054 -2.4919 13 6 4.0426 1.2362 -3.7472 14 6 3.0159 1.1644 -4.8794 15 6 3.7432 1.0909 -6.2234 16 6 2.7321 1.0208 -7.3386 17 1 1.6762 1.0284 -7.1115 18 6 3.1548 0.9470 -8.6489 19 7 2.2723 0.8854 -9.6221 20 14 4.9809 0.9331 -9.0418 21 1 5.4717 -0.4682 -9.0649 22 1 5.2064 1.5585 -10.3697 23 1 5.7166 1.6981 -8.0030 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 0.6475 2.1684 1.3314 30 1 2.0421 1.6180 2.0513 31 1 3.8674 1.5686 1.9845 32 1 6.3203 1.5700 1.7839 33 1 7.3774 1.4428 -0.4354 34 1 5.9828 1.3217 -2.4598 35 1 4.6620 2.1239 -3.8746 36 1 4.6726 0.3471 -3.7708 37 1 2.3962 0.2768 -4.7522 38 1 2.3862 2.0538 -4.8556 39 1 4.3627 1.9787 -6.3504 40 1 4.3733 0.2017 -6.2475 41 1 2.5697 0.8331 -10.5438 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049578182.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:27 Heat of formation + Delta-G solvation = -36.710327 kcal Electronic energy + Delta-G solvation = -19492.296820 eV Core-core repulsion = 16564.457313 eV Total energy + Delta-G solvation = -2927.839507 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.29893 -37.77646 -36.39965 -34.13081 -31.93370 -31.38274 -30.31528 -29.85966 -27.38039 -25.63392 -23.64421 -22.29800 -21.67530 -20.60871 -19.94413 -18.06470 -16.90671 -16.40082 -15.90785 -15.80861 -15.01622 -14.75044 -14.56982 -14.26432 -14.19748 -13.59687 -13.49963 -13.10812 -12.73093 -12.62145 -12.26172 -12.09568 -11.81743 -11.63159 -11.35262 -11.18300 -11.07312 -10.95526 -10.63896 -10.51560 -10.08184 -9.86020 -9.75355 -9.26278 -9.01519 -8.75603 -8.58463 -8.02853 -6.08433 -4.07418 1.32039 1.48189 3.27237 3.34910 3.37290 3.44083 3.75059 4.38650 4.40816 4.63270 4.85185 4.93084 4.97350 5.00536 5.16755 5.24673 5.35189 5.41295 5.43443 5.48356 5.54497 5.65482 5.67299 5.81611 5.84563 5.97321 6.07540 6.11224 6.35271 6.38437 6.39531 6.47505 6.50301 6.75793 6.83351 7.01300 7.18867 7.26566 7.31078 7.59095 7.73904 8.48757 8.96223 9.52992 11.04898 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.022341 B = 0.004169 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.012656 B = 6714.915732 C = 7776.642262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.151 4.151 3 C 0.140 3.860 4 H 0.096 0.904 5 N -0.841 5.841 6 C -0.112 4.112 7 C -0.071 4.071 8 C -0.167 4.167 9 C -0.084 4.084 10 C -0.210 4.210 11 C 0.143 3.857 12 O -0.311 6.311 13 C 0.057 3.943 14 C -0.100 4.100 15 C -0.010 4.010 16 C -0.522 4.522 17 H 0.074 0.926 18 C 0.067 3.933 19 N -0.902 5.902 20 Si 0.880 3.120 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.266 1.266 24 H 0.049 0.951 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.342 0.658 30 H 0.335 0.665 31 H 0.125 0.875 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.129 0.871 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.018 0.982 40 H 0.013 0.987 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.741 -0.398 23.185 23.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.191 4.191 3 C 0.028 3.972 4 H 0.114 0.886 5 N -0.371 5.371 6 C -0.113 4.113 7 C -0.089 4.089 8 C -0.185 4.185 9 C -0.102 4.102 10 C -0.229 4.229 11 C 0.096 3.904 12 O -0.224 6.224 13 C -0.018 4.018 14 C -0.137 4.137 15 C -0.047 4.047 16 C -0.560 4.560 17 H 0.092 0.908 18 C -0.134 4.134 19 N -0.540 5.540 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.190 1.190 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.156 0.844 30 H 0.149 0.851 31 H 0.143 0.857 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.147 0.853 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.036 0.964 40 H 0.032 0.968 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.888 0.234 22.665 22.998 hybrid contribution 0.810 -0.968 -0.300 1.298 sum 4.698 -0.735 22.366 22.866 Atomic orbital electron populations 1.21797 0.95576 1.01921 1.01771 1.22277 0.96145 0.97919 1.02746 1.20137 0.90834 0.92776 0.93407 0.88611 1.59008 1.16285 1.58035 1.03820 1.19072 0.95310 1.06533 0.90410 1.20685 0.93125 0.97621 0.97467 1.20963 0.94741 1.05454 0.97350 1.20912 0.99474 0.97694 0.92095 1.21308 0.92736 1.08809 1.00067 1.18881 0.89678 0.94969 0.86884 1.86107 1.35674 1.87342 1.13316 1.23197 0.96968 1.00688 0.80936 1.21507 0.97278 1.02712 0.92250 1.19514 0.96674 0.96478 0.92058 1.21064 0.94338 1.50925 0.89639 0.90833 1.25020 0.97588 0.94486 0.96307 1.69912 1.33753 1.50678 0.99687 0.86781 0.86083 0.78620 0.77820 1.20229 1.21263 1.19045 0.93208 0.92035 0.92542 0.90806 0.92388 0.84391 0.85143 0.85704 0.86306 0.86143 0.85304 0.92406 0.92448 0.91660 0.91586 0.96376 0.96841 0.92643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.68 37.16 0.36 -1.06 16 2 C -0.15 -1.61 5.56 -26.73 -0.15 -1.76 16 3 C 0.14 1.63 2.76 -68.86 -0.19 1.44 16 4 H 0.10 1.31 7.69 -51.93 -0.40 0.91 16 5 N -0.84 -7.91 8.78 -5.65 -0.05 -7.96 16 6 C -0.11 -1.46 5.07 -104.47 -0.53 -1.99 16 7 C -0.07 -0.79 9.27 -39.61 -0.37 -1.16 16 8 C -0.17 -1.79 10.04 -39.56 -0.40 -2.19 16 9 C -0.08 -0.96 10.04 -39.60 -0.40 -1.36 16 10 C -0.21 -2.83 9.04 -39.43 -0.36 -3.19 16 11 C 0.14 2.10 6.66 -39.22 -0.26 1.84 16 12 O -0.31 -5.07 9.27 -19.42 -0.18 -5.25 16 13 C 0.06 0.94 4.74 37.16 0.18 1.11 16 14 C -0.10 -1.98 5.52 -26.73 -0.15 -2.12 16 15 C -0.01 -0.23 4.04 -27.88 -0.11 -0.34 16 16 C -0.52 -14.82 9.66 -34.44 -0.33 -15.15 16 17 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 18 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 20 Si 0.88 21.47 27.47 -169.99 -4.67 16.81 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 24 H 0.05 0.38 6.87 -51.93 -0.36 0.02 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.34 2.73 7.55 -39.29 -0.30 2.43 16 30 H 0.34 2.60 7.21 -39.29 -0.28 2.32 16 31 H 0.13 1.12 6.29 -52.49 -0.33 0.79 16 32 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 33 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 34 H 0.13 1.65 6.30 -52.49 -0.33 1.32 16 35 H 0.06 0.91 7.66 -51.93 -0.40 0.52 16 36 H 0.06 0.89 7.66 -51.93 -0.40 0.50 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 40 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 41 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 331.06 15.07 4.99 4.99 Total: -1.00 -30.79 331.06 -8.47 -39.25 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.53 Total: 3.20 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: -2.80 Total: -24.07 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: 0.72 Total: -34.92 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.18 Total: -5.25 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.79 -8.47 -39.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578182.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.542 kcal (2) G-P(sol) polarization free energy of solvation -30.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds