Wall clock time and date at job start Mon Mar 30 2020 07:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 110.99961 * 2 1 4 4 H 1.09003 * 109.47145 * 324.99824 * 3 2 1 5 5 C 1.52995 * 109.47530 * 84.99993 * 3 2 1 6 6 C 1.50702 * 109.47167 * 205.00495 * 3 2 1 7 7 C 1.38294 * 119.97003 * 319.97112 * 6 3 2 8 8 C 1.38232 * 120.11124 * 180.02562 * 7 6 3 9 9 C 1.38173 * 120.05823 * 359.97438 * 8 7 6 10 10 C 1.38705 * 119.94203 * 359.76822 * 9 8 7 11 11 O 1.35904 * 120.05924 * 180.25551 * 10 9 8 12 12 C 1.42903 * 116.99671 * 0.25297 * 11 10 9 13 13 C 1.52991 * 109.47070 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.47383 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47453 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99742 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99915 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00192 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99804 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47358 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46961 * 120.00351 * 19 17 15 22 22 H 1.48500 * 109.47633 * 240.00101 * 19 17 15 23 23 C 1.38122 * 119.97497 * 140.00169 * 6 3 2 24 24 H 1.09004 * 109.47376 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47438 * 299.99718 * 1 2 3 26 26 H 1.09004 * 109.47691 * 60.00221 * 1 2 3 27 27 H 1.00900 * 110.99606 * 236.04411 * 2 1 3 28 28 H 1.09003 * 109.47045 * 59.99770 * 5 3 2 29 29 H 1.08997 * 109.47336 * 179.97438 * 5 3 2 30 30 H 1.09006 * 109.47142 * 300.00291 * 5 3 2 31 31 H 1.08003 * 119.94130 * 0.05120 * 7 6 3 32 32 H 1.08008 * 119.97134 * 180.02562 * 8 7 6 33 33 H 1.07997 * 120.02588 * 180.02562 * 9 8 7 34 34 H 1.08996 * 109.46945 * 300.00498 * 12 11 10 35 35 H 1.09006 * 109.46787 * 59.99781 * 12 11 10 36 36 H 1.08996 * 109.47418 * 300.00504 * 13 12 11 37 37 H 1.09006 * 109.47277 * 60.00347 * 13 12 11 38 38 H 1.09004 * 109.47108 * 300.00327 * 14 13 12 39 39 H 1.09006 * 109.46629 * 59.99953 * 14 13 12 40 40 H 0.97002 * 119.99731 * 179.97438 * 18 17 15 41 41 H 1.08002 * 120.02504 * 359.97056 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3397 2.0123 -0.5895 5 6 2.0608 1.8927 1.4369 6 6 3.3776 1.3790 -0.6006 7 6 4.2640 0.3589 -0.3068 8 6 5.5327 0.3632 -0.8557 9 6 5.9181 1.3869 -1.6999 10 6 5.0290 2.4083 -2.0003 11 8 5.4039 3.4136 -2.8345 12 6 6.7270 3.3523 -3.3708 13 6 6.9650 4.5591 -4.2805 14 6 8.3819 4.4938 -4.8542 15 6 8.6166 5.6828 -5.7498 16 1 7.8335 6.4124 -5.8950 17 6 9.8312 5.8398 -6.3830 18 7 10.7848 4.9517 -6.2058 19 14 10.1223 7.3141 -7.4926 20 1 8.9015 8.1589 -7.5239 21 1 11.2614 8.1103 -6.9693 22 1 10.4358 6.8456 -8.8664 23 6 3.7582 2.4049 -1.4434 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8305 -0.5262 -0.7814 28 1 2.7165 1.2518 2.0264 29 1 2.4519 2.9101 1.4369 30 1 1.0611 1.8872 1.8713 31 1 3.9644 -0.4425 0.3522 32 1 6.2231 -0.4348 -0.6251 33 1 6.9093 1.3895 -2.1287 34 1 7.4503 3.3631 -2.5554 35 1 6.8432 2.4345 -3.9473 36 1 6.2417 4.5478 -5.0958 37 1 6.8487 5.4771 -3.7043 38 1 9.1050 4.5054 -4.0386 39 1 8.4987 3.5758 -5.4303 40 1 11.6392 5.0621 -6.6516 41 1 3.0655 3.2012 -1.6725 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049578291.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:01 Heat of formation + Delta-G solvation = -34.378595 kcal Electronic energy + Delta-G solvation = -18822.904680 eV Core-core repulsion = 15895.166284 eV Total energy + Delta-G solvation = -2927.738396 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.14958 -38.26712 -36.17388 -34.03176 -31.91915 -31.81584 -30.03464 -28.99960 -26.93707 -25.73494 -23.81697 -22.56955 -22.41977 -20.42190 -20.10670 -17.84168 -16.51745 -16.10402 -15.86367 -15.79044 -15.67275 -14.90008 -14.52848 -14.46633 -13.68053 -13.51193 -13.24984 -13.14643 -12.82753 -12.42492 -12.30860 -12.08229 -11.86758 -11.75291 -11.54297 -11.36072 -11.03588 -10.88020 -10.62206 -10.58570 -10.40305 -9.78448 -9.55620 -9.16792 -8.87993 -8.80093 -8.40990 -8.06326 -6.05861 -4.08438 1.27372 1.51137 3.28779 3.36053 3.39741 3.46385 3.74070 3.97959 4.42391 4.49771 4.81499 4.98546 5.02914 5.13165 5.16476 5.25908 5.30455 5.34560 5.44193 5.50539 5.52247 5.53319 5.62761 5.65791 5.71781 5.93596 6.01670 6.04340 6.36555 6.42282 6.48641 6.53217 6.58312 6.77389 6.86590 6.96726 7.05353 7.57504 7.67443 7.69022 7.92813 8.34640 8.98024 9.56089 11.05702 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.048075 B = 0.002772 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.284243 B =10097.860868 C =10400.739463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.688 5.688 3 C 0.125 3.875 4 H 0.053 0.947 5 C -0.135 4.135 6 C -0.060 4.060 7 C -0.149 4.149 8 C -0.080 4.080 9 C -0.209 4.209 10 C 0.141 3.859 11 O -0.317 6.317 12 C 0.059 3.941 13 C -0.108 4.108 14 C 0.024 3.976 15 C -0.520 4.520 16 H 0.058 0.942 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.895 3.105 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.154 4.154 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.022 0.978 27 H 0.346 0.654 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.130 0.870 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.261 0.739 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.093 -10.475 13.442 24.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.320 5.320 3 C 0.016 3.984 4 H 0.071 0.929 5 C -0.193 4.193 6 C -0.060 4.060 7 C -0.167 4.167 8 C -0.099 4.099 9 C -0.228 4.228 10 C 0.094 3.906 11 O -0.230 6.230 12 C -0.015 4.015 13 C -0.146 4.146 14 C -0.013 4.013 15 C -0.558 4.558 16 H 0.076 0.924 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.722 3.278 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.173 4.173 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.041 0.959 27 H 0.164 0.836 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.146 0.854 32 H 0.141 0.859 33 H 0.148 0.852 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.978 -10.403 14.000 24.340 hybrid contribution 0.382 0.885 -1.583 1.854 sum -16.595 -9.518 12.416 22.807 Atomic orbital electron populations 1.22250 0.87768 1.01887 1.00459 1.60538 1.07702 1.13470 1.50250 1.20441 0.91503 0.89738 0.96749 0.92937 1.21772 1.01900 1.00736 0.94845 1.19595 0.95537 0.94599 0.96297 1.20847 0.93563 0.99685 1.02631 1.20959 0.96074 0.97333 0.95497 1.21415 1.00764 0.96702 1.03930 1.19056 0.93328 0.87868 0.90312 1.86120 1.34552 1.43776 1.58591 1.23206 0.79963 1.01411 0.96951 1.21721 1.01253 0.94563 0.97048 1.19053 0.88709 0.97674 0.95852 1.21219 0.98898 1.08225 1.27497 0.92402 1.25029 0.96116 0.96537 0.96826 1.69971 1.04663 1.35173 1.43659 0.86492 0.78221 0.82668 0.80379 1.19667 1.20956 1.20955 1.20247 0.95100 1.00769 1.01157 0.91373 0.91651 0.95896 0.83602 0.91708 0.92201 0.92614 0.85399 0.85896 0.85182 0.92327 0.92361 0.92218 0.92200 0.96301 0.96313 0.92957 0.85591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.50 60.06 0.63 0.81 16 2 N -0.69 -5.81 6.05 -115.25 -0.70 -6.50 16 3 C 0.12 1.17 2.82 -68.87 -0.19 0.98 16 4 H 0.05 0.49 7.66 -51.93 -0.40 0.10 16 5 C -0.13 -1.18 9.39 37.15 0.35 -0.83 16 6 C -0.06 -0.68 4.71 -104.64 -0.49 -1.17 16 7 C -0.15 -1.64 9.00 -39.56 -0.36 -1.99 16 8 C -0.08 -0.94 10.04 -39.61 -0.40 -1.34 16 9 C -0.21 -2.90 9.04 -39.43 -0.36 -3.26 16 10 C 0.14 2.15 6.69 -39.22 -0.26 1.89 16 11 O -0.32 -5.54 10.14 -19.44 -0.20 -5.74 16 12 C 0.06 1.05 4.74 37.15 0.18 1.23 16 13 C -0.11 -2.27 5.52 -26.73 -0.15 -2.41 16 14 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 15 C -0.52 -14.68 9.11 -34.44 -0.31 -15.00 16 16 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 19 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 23 C -0.15 -2.05 9.61 -39.43 -0.38 -2.43 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.43 7.44 -51.93 -0.39 0.04 16 26 H 0.02 0.15 8.06 -51.93 -0.42 -0.26 16 27 H 0.35 2.86 8.07 -39.29 -0.32 2.54 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.43 7.45 -51.93 -0.39 0.04 16 31 H 0.13 1.23 7.71 -52.48 -0.40 0.83 16 32 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 33 H 0.13 1.76 6.30 -52.49 -0.33 1.43 16 34 H 0.06 1.00 7.65 -51.93 -0.40 0.61 16 35 H 0.06 0.99 7.67 -51.93 -0.40 0.60 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.13 1.57 8.04 -52.49 -0.42 1.15 16 LS Contribution 339.08 15.07 5.11 5.11 Total: -1.00 -29.98 339.08 -8.83 -38.81 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -6.78 Total: -0.73 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: -1.98 Total: -21.54 kcal Atomic # 7 Polarization: -32.51 SS G_CDS: 0.04 Total: -32.47 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -0.20 Total: -5.74 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.98 -8.83 -38.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578291.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.436 kcal (2) G-P(sol) polarization free energy of solvation -29.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds