Wall clock time and date at job start Mon Mar 30 2020 07:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 110.99961 * 2 1 4 4 H 1.09003 * 109.47145 * 324.99824 * 3 2 1 5 5 C 1.52995 * 109.47530 * 84.99993 * 3 2 1 6 6 C 1.50702 * 109.47167 * 205.00495 * 3 2 1 7 7 C 1.38294 * 119.97003 * 319.97112 * 6 3 2 8 8 C 1.38232 * 120.11124 * 180.02562 * 7 6 3 9 9 C 1.38173 * 120.05823 * 359.97438 * 8 7 6 10 10 C 1.38705 * 119.94203 * 359.76822 * 9 8 7 11 11 O 1.35904 * 120.05924 * 180.25551 * 10 9 8 12 12 C 1.42903 * 116.99671 * 0.25297 * 11 10 9 13 13 C 1.52991 * 109.47070 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.47383 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47453 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99742 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99915 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00192 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99804 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47358 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46961 * 120.00351 * 19 17 15 22 22 H 1.48500 * 109.47633 * 240.00101 * 19 17 15 23 23 C 1.38122 * 119.97497 * 140.00169 * 6 3 2 24 24 H 1.09004 * 109.47376 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47438 * 299.99718 * 1 2 3 26 26 H 1.09004 * 109.47691 * 60.00221 * 1 2 3 27 27 H 1.00900 * 110.99606 * 236.04411 * 2 1 3 28 28 H 1.09003 * 109.47045 * 59.99770 * 5 3 2 29 29 H 1.08997 * 109.47336 * 179.97438 * 5 3 2 30 30 H 1.09006 * 109.47142 * 300.00291 * 5 3 2 31 31 H 1.08003 * 119.94130 * 0.05120 * 7 6 3 32 32 H 1.08008 * 119.97134 * 180.02562 * 8 7 6 33 33 H 1.07997 * 120.02588 * 180.02562 * 9 8 7 34 34 H 1.08996 * 109.46945 * 300.00498 * 12 11 10 35 35 H 1.09006 * 109.46787 * 59.99781 * 12 11 10 36 36 H 1.08996 * 109.47418 * 300.00504 * 13 12 11 37 37 H 1.09006 * 109.47277 * 60.00347 * 13 12 11 38 38 H 1.09004 * 109.47108 * 300.00327 * 14 13 12 39 39 H 1.09006 * 109.46629 * 59.99953 * 14 13 12 40 40 H 0.97002 * 119.99731 * 179.97438 * 18 17 15 41 41 H 1.08002 * 120.02504 * 359.97056 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3397 2.0123 -0.5895 5 6 2.0608 1.8927 1.4369 6 6 3.3776 1.3790 -0.6006 7 6 4.2640 0.3589 -0.3068 8 6 5.5327 0.3632 -0.8557 9 6 5.9181 1.3869 -1.6999 10 6 5.0290 2.4083 -2.0003 11 8 5.4039 3.4136 -2.8345 12 6 6.7270 3.3523 -3.3708 13 6 6.9650 4.5591 -4.2805 14 6 8.3819 4.4938 -4.8542 15 6 8.6166 5.6828 -5.7498 16 1 7.8335 6.4124 -5.8950 17 6 9.8312 5.8398 -6.3830 18 7 10.7848 4.9517 -6.2058 19 14 10.1223 7.3141 -7.4926 20 1 8.9015 8.1589 -7.5239 21 1 11.2614 8.1103 -6.9693 22 1 10.4358 6.8456 -8.8664 23 6 3.7582 2.4049 -1.4434 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8305 -0.5262 -0.7814 28 1 2.7165 1.2518 2.0264 29 1 2.4519 2.9101 1.4369 30 1 1.0611 1.8872 1.8713 31 1 3.9644 -0.4425 0.3522 32 1 6.2231 -0.4348 -0.6251 33 1 6.9093 1.3895 -2.1287 34 1 7.4503 3.3631 -2.5554 35 1 6.8432 2.4345 -3.9473 36 1 6.2417 4.5478 -5.0958 37 1 6.8487 5.4771 -3.7043 38 1 9.1050 4.5054 -4.0386 39 1 8.4987 3.5758 -5.4303 40 1 11.6392 5.0621 -6.6516 41 1 3.0655 3.2012 -1.6725 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578291.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:01 Heat of formation + Delta-G solvation = -51.551474 kcal Electronic energy + Delta-G solvation = -18823.649352 eV Core-core repulsion = 15895.166284 eV Total energy + Delta-G solvation = -2928.483068 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.22827 -39.31759 -37.06965 -35.94824 -33.73416 -32.71676 -31.14295 -29.87094 -28.74656 -26.40661 -25.43578 -23.63856 -23.51384 -22.01357 -21.19841 -18.93084 -18.48905 -17.20518 -17.11088 -16.92236 -16.62167 -16.45661 -15.80745 -15.29935 -14.95964 -14.60268 -14.55944 -14.07198 -13.95032 -13.81837 -13.55207 -13.30213 -13.01892 -12.88303 -12.66663 -12.53800 -12.46718 -12.22490 -12.10428 -12.09248 -11.62967 -11.50232 -11.48490 -11.24687 -10.59194 -9.84452 -9.44985 -9.15143 -8.23891 -6.34810 0.29795 0.49133 1.39807 1.40063 1.53639 2.18852 2.41578 2.76262 3.09987 3.28353 3.64323 3.85895 4.01538 4.07953 4.16857 4.22077 4.39056 4.39816 4.42583 4.50527 4.57350 4.64332 4.69693 4.79463 4.84129 4.92389 4.96777 5.05085 5.07660 5.09561 5.35744 5.37035 5.45647 5.50329 5.54365 5.63203 5.78552 5.84264 6.06189 6.18270 6.40603 6.46721 6.80665 7.34565 8.88381 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.048075 B = 0.002772 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.284243 B =10097.860868 C =10400.739463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.690 5.690 3 C 0.128 3.872 4 H 0.053 0.947 5 C -0.132 4.132 6 C -0.055 4.055 7 C -0.139 4.139 8 C -0.080 4.080 9 C -0.222 4.222 10 C 0.110 3.890 11 O -0.333 6.333 12 C 0.072 3.928 13 C -0.096 4.096 14 C 0.029 3.971 15 C -0.544 4.544 16 H 0.060 0.940 17 C 0.000 4.000 18 N -0.931 5.931 19 Si 0.967 3.033 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.277 1.277 23 C -0.162 4.162 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.022 0.978 27 H 0.346 0.654 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.127 0.873 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.000 1.000 39 H 0.000 1.000 40 H 0.265 0.735 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.330 -10.885 14.146 25.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.322 5.322 3 C 0.018 3.982 4 H 0.070 0.930 5 C -0.190 4.190 6 C -0.055 4.055 7 C -0.158 4.158 8 C -0.098 4.098 9 C -0.241 4.241 10 C 0.065 3.935 11 O -0.247 6.247 12 C -0.002 4.002 13 C -0.134 4.134 14 C -0.009 4.009 15 C -0.582 4.582 16 H 0.078 0.922 17 C -0.198 4.198 18 N -0.572 5.572 19 Si 0.791 3.209 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.181 4.181 24 H 0.098 0.902 25 H 0.087 0.913 26 H 0.041 0.959 27 H 0.165 0.835 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.166 0.834 32 H 0.166 0.834 33 H 0.145 0.855 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.018 0.982 39 H 0.018 0.982 40 H 0.074 0.926 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.237 -10.822 14.717 25.813 hybrid contribution 0.695 0.917 -1.717 2.067 sum -17.543 -9.905 13.000 23.976 Atomic orbital electron populations 1.22307 0.86705 1.02765 1.00636 1.60568 1.08710 1.12624 1.50287 1.20431 0.90280 0.90518 0.96947 0.92955 1.21751 1.02565 1.00387 0.94292 1.19830 0.96609 0.93802 0.95281 1.21112 0.93035 0.99685 1.01919 1.21265 0.96853 0.97161 0.94475 1.21523 1.00580 0.97212 1.04785 1.19335 0.94580 0.88257 0.91372 1.86037 1.33800 1.45202 1.59685 1.22853 0.80843 0.99900 0.96640 1.21433 0.98326 0.96111 0.97521 1.18915 0.91030 0.96103 0.94805 1.21647 0.99312 1.09100 1.28169 0.92182 1.25971 0.95805 0.99634 0.98350 1.70088 1.05222 1.37115 1.44728 0.85366 0.78402 0.78854 0.78234 1.18721 1.20241 1.20224 1.20411 0.94530 1.01613 1.01568 0.90190 0.91259 0.95914 0.83524 0.92000 0.92549 0.91412 0.83436 0.83401 0.85499 0.91917 0.91911 0.92280 0.92290 0.98197 0.98184 0.92611 0.85335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.50 127.69 1.34 1.63 16 2 N -0.69 -10.05 6.05 -518.53 -3.14 -13.18 16 3 C 0.13 2.16 2.82 44.17 0.12 2.28 16 4 H 0.05 0.90 7.66 -2.39 -0.02 0.88 16 5 C -0.13 -2.05 9.39 71.98 0.68 -1.37 16 6 C -0.05 -1.16 4.71 -19.88 -0.09 -1.25 16 7 C -0.14 -2.75 9.00 22.28 0.20 -2.55 16 8 C -0.08 -1.72 10.04 22.25 0.22 -1.50 16 9 C -0.22 -6.07 9.04 22.37 0.20 -5.86 16 10 C 0.11 3.35 6.69 22.51 0.15 3.51 16 11 O -0.33 -11.80 10.14 -92.47 -0.94 -12.74 16 12 C 0.07 2.63 4.74 71.98 0.34 2.97 16 13 C -0.10 -4.11 5.52 30.59 0.17 -3.94 16 14 C 0.03 1.51 4.97 29.85 0.15 1.66 16 15 C -0.54 -31.15 9.11 25.60 0.23 -30.92 16 16 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 17 C 0.00 0.02 5.46 84.65 0.46 0.48 16 18 N -0.93 -56.31 13.29 21.45 0.28 -56.02 16 19 Si 0.97 44.27 29.54 68.60 2.03 46.30 16 20 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 23 C -0.16 -4.24 9.61 22.37 0.21 -4.03 16 24 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 25 H 0.07 0.74 7.44 -2.39 -0.02 0.73 16 26 H 0.02 0.26 8.06 -2.39 -0.02 0.24 16 27 H 0.35 4.94 8.07 -89.69 -0.72 4.22 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.89 7.45 -2.38 -0.02 0.87 16 31 H 0.15 2.37 7.71 -2.91 -0.02 2.35 16 32 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 33 H 0.13 3.46 6.30 -2.91 -0.02 3.44 16 34 H 0.06 2.19 7.65 -2.39 -0.02 2.18 16 35 H 0.06 2.19 7.67 -2.38 -0.02 2.17 16 36 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 38 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 39 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 40 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 41 H 0.13 3.19 8.04 -2.91 -0.02 3.16 16 Total: -1.00 -63.91 339.08 2.90 -61.01 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.27 Total: 13.55 kcal Atomic # 6 Polarization: -43.30 SS G_CDS: 4.39 Total: -38.91 kcal Atomic # 7 Polarization: -66.35 SS G_CDS: -2.85 Total: -69.20 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -0.94 Total: -12.74 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -63.91 2.90 -61.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578291.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.454 kcal (2) G-P(sol) polarization free energy of solvation -63.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds